Strain Fitness in Sphingobium sp. HT1-2 around GFF383

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF382 and GFF383 are separated by 10 nucleotidesGFF383 and GFF384 are separated by 68 nucleotides GFF382 - diguanylate cyclase/phosphodiesterase (GGDEF & EAL domains) with PAS/PAC sensor(s), at 372,719 to 374,413 GFF382 GFF383 - Peptidyl-prolyl cis-trans isomerase PpiA precursor (EC 5.2.1.8), at 374,424 to 375,041 GFF383 GFF384 - Chromosomal replication initiator protein DnaA, at 375,110 to 376,528 GFF384 Position (kb) 374 375 376Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 373.482 kb on + strand, within GFF382at 373.482 kb on + strand, within GFF382at 373.490 kb on - strand, within GFF382at 373.490 kb on - strand, within GFF382at 373.490 kb on - strand, within GFF382at 373.493 kb on + strand, within GFF382at 373.494 kb on + strand, within GFF382at 373.494 kb on + strand, within GFF382at 373.502 kb on - strand, within GFF382at 373.502 kb on - strand, within GFF382at 373.516 kb on + strand, within GFF382at 373.537 kb on + strand, within GFF382at 373.545 kb on - strand, within GFF382at 373.550 kb on + strand, within GFF382at 373.556 kb on + strand, within GFF382at 373.556 kb on + strand, within GFF382at 373.556 kb on + strand, within GFF382at 373.556 kb on + strand, within GFF382at 373.564 kb on - strand, within GFF382at 373.564 kb on - strand, within GFF382at 373.564 kb on - strand, within GFF382at 373.569 kb on - strand, within GFF382at 373.573 kb on + strand, within GFF382at 373.597 kb on + strand, within GFF382at 373.624 kb on - strand, within GFF382at 373.633 kb on + strand, within GFF382at 373.648 kb on - strand, within GFF382at 373.648 kb on - strand, within GFF382at 373.648 kb on - strand, within GFF382at 373.695 kb on + strand, within GFF382at 373.722 kb on - strand, within GFF382at 373.723 kb on - strand, within GFF382at 373.742 kb on + strand, within GFF382at 373.749 kb on - strand, within GFF382at 373.762 kb on + strand, within GFF382at 373.770 kb on - strand, within GFF382at 373.770 kb on - strand, within GFF382at 373.770 kb on - strand, within GFF382at 373.770 kb on - strand, within GFF382at 373.781 kb on - strand, within GFF382at 373.827 kb on - strand, within GFF382at 373.829 kb on + strand, within GFF382at 373.839 kb on + strand, within GFF382at 373.839 kb on + strand, within GFF382at 373.847 kb on - strand, within GFF382at 373.908 kb on + strand, within GFF382at 373.937 kb on - strand, within GFF382at 373.964 kb on + strand, within GFF382at 373.971 kb on - strand, within GFF382at 373.991 kb on - strand, within GFF382at 374.039 kb on + strand, within GFF382at 374.042 kb on - strand, within GFF382at 374.044 kb on + strand, within GFF382at 374.044 kb on + strand, within GFF382at 374.044 kb on + strand, within GFF382at 374.044 kb on + strand, within GFF382at 374.044 kb on + strand, within GFF382at 374.044 kb on + strand, within GFF382at 374.044 kb on + strand, within GFF382at 374.044 kb on + strand, within GFF382at 374.052 kb on - strand, within GFF382at 374.052 kb on - strand, within GFF382at 374.052 kb on - strand, within GFF382at 374.052 kb on - strand, within GFF382at 374.052 kb on - strand, within GFF382at 374.052 kb on - strand, within GFF382at 374.103 kb on + strand, within GFF382at 374.103 kb on + strand, within GFF382at 374.103 kb on + strand, within GFF382at 374.104 kb on + strand, within GFF382at 374.110 kb on + strand, within GFF382at 374.111 kb on - strand, within GFF382at 374.111 kb on - strand, within GFF382at 374.111 kb on - strand, within GFF382at 374.116 kb on - strand, within GFF382at 374.143 kb on + strand, within GFF382at 374.143 kb on + strand, within GFF382at 374.143 kb on + strand, within GFF382at 374.151 kb on - strand, within GFF382at 374.151 kb on - strand, within GFF382at 374.165 kb on + strand, within GFF382at 374.174 kb on + strand, within GFF382at 374.184 kb on + strand, within GFF382at 374.187 kb on - strand, within GFF382at 374.191 kb on + strand, within GFF382at 374.192 kb on - strand, within GFF382at 374.192 kb on - strand, within GFF382at 374.225 kb on + strand, within GFF382at 374.238 kb on + strand, within GFF382at 374.268 kb on - strandat 374.276 kb on + strandat 374.282 kb on + strandat 374.286 kb on - strandat 374.296 kb on + strandat 374.301 kb on + strandat 374.309 kb on - strandat 374.309 kb on - strandat 374.311 kb on + strandat 374.311 kb on + strandat 374.311 kb on + strandat 374.311 kb on + strandat 374.319 kb on + strandat 374.319 kb on - strandat 374.319 kb on - strandat 374.319 kb on - strandat 374.319 kb on - strandat 374.319 kb on - strandat 374.362 kb on - strandat 374.382 kb on + strandat 374.383 kb on + strandat 374.390 kb on - strandat 374.390 kb on - strandat 374.391 kb on + strandat 374.401 kb on + strandat 374.412 kb on + strandat 374.415 kb on - strandat 374.422 kb on + strandat 374.422 kb on + strandat 374.422 kb on + strandat 374.427 kb on + strandat 374.430 kb on - strandat 374.430 kb on - strandat 374.430 kb on - strandat 374.435 kb on - strandat 374.449 kb on + strandat 374.451 kb on - strandat 374.451 kb on - strandat 374.462 kb on + strandat 374.469 kb on + strandat 374.474 kb on + strandat 374.525 kb on - strand, within GFF383at 374.525 kb on - strand, within GFF383at 374.546 kb on - strand, within GFF383at 374.559 kb on + strand, within GFF383at 374.573 kb on + strand, within GFF383at 374.574 kb on + strand, within GFF383at 374.582 kb on - strand, within GFF383at 374.582 kb on - strand, within GFF383at 374.628 kb on - strand, within GFF383at 374.628 kb on - strand, within GFF383at 374.643 kb on - strand, within GFF383at 374.645 kb on - strand, within GFF383at 374.653 kb on - strand, within GFF383at 374.658 kb on + strand, within GFF383at 374.658 kb on + strand, within GFF383at 374.658 kb on + strand, within GFF383at 374.658 kb on + strand, within GFF383at 374.661 kb on - strand, within GFF383at 374.666 kb on - strand, within GFF383at 374.666 kb on - strand, within GFF383at 374.666 kb on - strand, within GFF383at 374.679 kb on + strand, within GFF383at 374.693 kb on + strand, within GFF383at 374.693 kb on + strand, within GFF383at 374.700 kb on + strand, within GFF383at 374.700 kb on + strand, within GFF383at 374.701 kb on - strand, within GFF383at 374.701 kb on - strand, within GFF383at 374.701 kb on - strand, within GFF383at 374.701 kb on - strand, within GFF383at 374.701 kb on - strand, within GFF383at 374.705 kb on + strand, within GFF383at 374.708 kb on - strand, within GFF383at 374.755 kb on + strand, within GFF383at 374.759 kb on - strand, within GFF383at 374.767 kb on + strand, within GFF383at 374.777 kb on + strand, within GFF383at 374.790 kb on + strand, within GFF383at 374.792 kb on - strand, within GFF383at 374.792 kb on - strand, within GFF383at 374.809 kb on + strand, within GFF383at 374.811 kb on + strand, within GFF383at 374.817 kb on - strand, within GFF383at 374.817 kb on - strand, within GFF383at 374.819 kb on - strand, within GFF383at 374.819 kb on - strand, within GFF383at 374.834 kb on - strand, within GFF383at 374.845 kb on + strand, within GFF383at 374.845 kb on + strand, within GFF383at 374.848 kb on - strand, within GFF383at 374.853 kb on - strand, within GFF383at 374.887 kb on + strand, within GFF383at 374.902 kb on - strand, within GFF383at 374.969 kb on + strand, within GFF383at 374.971 kb on + strand, within GFF383at 374.971 kb on + strand, within GFF383at 374.971 kb on + strand, within GFF383at 374.977 kb on - strand, within GFF383at 375.000 kb on + strandat 375.015 kb on + strandat 375.018 kb on + strandat 375.023 kb on + strandat 375.023 kb on + strandat 375.023 kb on + strandat 375.026 kb on - strandat 375.030 kb on + strandat 375.031 kb on - strandat 375.031 kb on - strandat 375.031 kb on - strandat 375.031 kb on - strandat 375.039 kb on - strandat 375.045 kb on + strandat 375.071 kb on - strandat 375.086 kb on - strandat 375.090 kb on + strandat 375.096 kb on + strandat 375.098 kb on - strandat 375.114 kb on - strandat 375.114 kb on - strandat 375.114 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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373,482 + GFF382 0.45 -0.3
373,482 + GFF382 0.45 +1.1
373,490 - GFF382 0.45 -0.1
373,490 - GFF382 0.45 +0.4
373,490 - GFF382 0.45 -1.3
373,493 + GFF382 0.46 +0.2
373,494 + GFF382 0.46 -1.3
373,494 + GFF382 0.46 +1.0
373,502 - GFF382 0.46 +1.3
373,502 - GFF382 0.46 +0.0
373,516 + GFF382 0.47 -0.6
373,537 + GFF382 0.48 -0.2
373,545 - GFF382 0.49 -1.4
373,550 + GFF382 0.49 -1.1
373,556 + GFF382 0.49 -1.0
373,556 + GFF382 0.49 +0.2
373,556 + GFF382 0.49 -0.1
373,556 + GFF382 0.49 -2.3
373,564 - GFF382 0.50 -0.6
373,564 - GFF382 0.50 -0.1
373,564 - GFF382 0.50 +0.0
373,569 - GFF382 0.50 +0.5
373,573 + GFF382 0.50 -0.8
373,597 + GFF382 0.52 -1.3
373,624 - GFF382 0.53 +0.0
373,633 + GFF382 0.54 -1.2
373,648 - GFF382 0.55 -0.2
373,648 - GFF382 0.55 -0.2
373,648 - GFF382 0.55 +0.8
373,695 + GFF382 0.58 -0.8
373,722 - GFF382 0.59 +0.5
373,723 - GFF382 0.59 +1.5
373,742 + GFF382 0.60 +1.4
373,749 - GFF382 0.61 -1.2
373,762 + GFF382 0.62 +0.3
373,770 - GFF382 0.62 +1.1
373,770 - GFF382 0.62 -1.9
373,770 - GFF382 0.62 -1.3
373,770 - GFF382 0.62 -0.0
373,781 - GFF382 0.63 -0.3
373,827 - GFF382 0.65 -0.6
373,829 + GFF382 0.65 +1.1
373,839 + GFF382 0.66 -1.3
373,839 + GFF382 0.66 -0.8
373,847 - GFF382 0.67 +1.0
373,908 + GFF382 0.70 +0.5
373,937 - GFF382 0.72 -0.5
373,964 + GFF382 0.73 -0.6
373,971 - GFF382 0.74 -0.2
373,991 - GFF382 0.75 +0.5
374,039 + GFF382 0.78 +1.5
374,042 - GFF382 0.78 -0.4
374,044 + GFF382 0.78 +1.1
374,044 + GFF382 0.78 +0.3
374,044 + GFF382 0.78 -2.0
374,044 + GFF382 0.78 -0.7
374,044 + GFF382 0.78 +1.2
374,044 + GFF382 0.78 -1.3
374,044 + GFF382 0.78 -1.7
374,044 + GFF382 0.78 -0.2
374,052 - GFF382 0.79 -2.8
374,052 - GFF382 0.79 -1.2
374,052 - GFF382 0.79 +0.2
374,052 - GFF382 0.79 -1.2
374,052 - GFF382 0.79 +1.0
374,052 - GFF382 0.79 -0.1
374,103 + GFF382 0.82 -0.3
374,103 + GFF382 0.82 +0.8
374,103 + GFF382 0.82 +0.1
374,104 + GFF382 0.82 -0.2
374,110 + GFF382 0.82 +0.0
374,111 - GFF382 0.82 -0.6
374,111 - GFF382 0.82 -1.4
374,111 - GFF382 0.82 +1.7
374,116 - GFF382 0.82 +0.6
374,143 + GFF382 0.84 -1.5
374,143 + GFF382 0.84 -1.5
374,143 + GFF382 0.84 -0.1
374,151 - GFF382 0.84 +0.8
374,151 - GFF382 0.84 -1.2
374,165 + GFF382 0.85 -0.2
374,174 + GFF382 0.86 +0.4
374,184 + GFF382 0.86 -1.3
374,187 - GFF382 0.87 +1.2
374,191 + GFF382 0.87 -1.4
374,192 - GFF382 0.87 -0.7
374,192 - GFF382 0.87 -2.0
374,225 + GFF382 0.89 +0.8
374,238 + GFF382 0.90 +0.5
374,268 - +0.9
374,276 + -0.3
374,282 + -0.5
374,286 - -0.8
374,296 + -0.3
374,301 + -1.2
374,309 - +0.4
374,309 - +0.3
374,311 + -0.8
374,311 + -1.3
374,311 + +0.6
374,311 + -0.4
374,319 + -0.6
374,319 - -1.6
374,319 - -0.4
374,319 - -1.2
374,319 - +0.0
374,319 - -0.7
374,362 - +0.9
374,382 + -1.0
374,383 + -0.6
374,390 - +0.1
374,390 - -0.9
374,391 + +0.9
374,401 + +0.9
374,412 + -1.1
374,415 - -0.2
374,422 + +0.4
374,422 + +0.9
374,422 + +0.0
374,427 + -0.4
374,430 - +0.7
374,430 - +0.9
374,430 - +0.5
374,435 - -0.5
374,449 + -1.5
374,451 - -0.3
374,451 - -0.6
374,462 + -1.6
374,469 + -0.1
374,474 + -0.0
374,525 - GFF383 0.16 -0.6
374,525 - GFF383 0.16 -0.1
374,546 - GFF383 0.20 +0.4
374,559 + GFF383 0.22 +0.6
374,573 + GFF383 0.24 +0.3
374,574 + GFF383 0.24 +0.8
374,582 - GFF383 0.26 -2.2
374,582 - GFF383 0.26 +0.2
374,628 - GFF383 0.33 +0.7
374,628 - GFF383 0.33 +0.5
374,643 - GFF383 0.35 -0.2
374,645 - GFF383 0.36 +0.5
374,653 - GFF383 0.37 +0.2
374,658 + GFF383 0.38 +1.8
374,658 + GFF383 0.38 +0.2
374,658 + GFF383 0.38 +0.1
374,658 + GFF383 0.38 -0.6
374,661 - GFF383 0.38 +0.2
374,666 - GFF383 0.39 -1.5
374,666 - GFF383 0.39 +0.2
374,666 - GFF383 0.39 +1.6
374,679 + GFF383 0.41 +0.0
374,693 + GFF383 0.44 +0.3
374,693 + GFF383 0.44 -1.4
374,700 + GFF383 0.45 -2.1
374,700 + GFF383 0.45 +0.4
374,701 - GFF383 0.45 -0.0
374,701 - GFF383 0.45 +0.3
374,701 - GFF383 0.45 -0.0
374,701 - GFF383 0.45 -0.3
374,701 - GFF383 0.45 +1.3
374,705 + GFF383 0.45 +0.1
374,708 - GFF383 0.46 -0.1
374,755 + GFF383 0.54 +1.0
374,759 - GFF383 0.54 -1.4
374,767 + GFF383 0.56 -1.8
374,777 + GFF383 0.57 -3.0
374,790 + GFF383 0.59 +1.3
374,792 - GFF383 0.60 -2.7
374,792 - GFF383 0.60 -0.4
374,809 + GFF383 0.62 -1.5
374,811 + GFF383 0.63 +0.5
374,817 - GFF383 0.64 -2.3
374,817 - GFF383 0.64 +0.6
374,819 - GFF383 0.64 +1.1
374,819 - GFF383 0.64 -2.1
374,834 - GFF383 0.66 -0.1
374,845 + GFF383 0.68 -0.5
374,845 + GFF383 0.68 -0.4
374,848 - GFF383 0.69 +1.1
374,853 - GFF383 0.69 -0.1
374,887 + GFF383 0.75 -1.8
374,902 - GFF383 0.77 +0.4
374,969 + GFF383 0.88 +1.0
374,971 + GFF383 0.89 +0.2
374,971 + GFF383 0.89 +0.0
374,971 + GFF383 0.89 -0.4
374,977 - GFF383 0.89 +0.6
375,000 + +0.3
375,015 + +1.6
375,018 + -1.1
375,023 + +0.4
375,023 + -1.0
375,023 + -0.5
375,026 - -0.5
375,030 + -1.0
375,031 - +1.2
375,031 - -1.1
375,031 - +0.3
375,031 - -1.3
375,039 - -0.9
375,045 + -1.3
375,071 - +0.5
375,086 - -0.5
375,090 + -1.5
375,096 + +0.6
375,098 - -0.2
375,114 - +0.1
375,114 - -0.3
375,114 - -0.8

Or see this region's nucleotide sequence