Strain Fitness in Sphingobium sp. HT1-2 around GFF3792

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,833,458	-		GFF3791	0.71	-2.1
3,833,475	-		GFF3791	0.72	-1.2
3,833,478	+		GFF3791	0.72	+0.7
3,833,492	-		GFF3791	0.72	-1.4
3,833,493	-		GFF3791	0.72	+0.5
3,833,506	-		GFF3791	0.73	-1.1
3,833,511	-		GFF3791	0.73	-1.0
3,833,520	+		GFF3791	0.74	-0.4
3,833,520	+		GFF3791	0.74	-0.0
3,833,520	+		GFF3791	0.74	-0.1
3,833,528	-		GFF3791	0.74	+0.1
3,833,568	+		GFF3791	0.75	+0.1
3,833,575	+		GFF3791	0.76	-1.7
3,833,575	+		GFF3791	0.76	-1.4
3,833,575	+		GFF3791	0.76	-0.1
3,833,575	+		GFF3791	0.76	-1.7
3,833,581	+		GFF3791	0.76	-1.5
3,833,583	-		GFF3791	0.76	-2.8
3,833,583	-		GFF3791	0.76	-0.2
3,833,583	-		GFF3791	0.76	+0.3
3,833,591	+		GFF3791	0.76	+0.0
3,833,594	-		GFF3791	0.76	-2.6
3,833,598	+		GFF3791	0.77	-2.2
3,833,598	+		GFF3791	0.77	-1.7
3,833,598	+		GFF3791	0.77	-1.1
3,833,598	+		GFF3791	0.77	-1.3
3,833,598	+		GFF3791	0.77	+0.5
3,833,598	+		GFF3791	0.77	-2.0
3,833,598	+		GFF3791	0.77	-1.9
3,833,598	+		GFF3791	0.77	+0.7
3,833,606	-		GFF3791	0.77	-1.1
3,833,606	-		GFF3791	0.77	-1.6
3,833,621	+		GFF3791	0.77	-1.9
3,833,629	-		GFF3791	0.78	+0.4
3,833,644	+		GFF3791	0.78	+1.0
3,833,644	+		GFF3791	0.78	+1.1
3,833,644	+		GFF3791	0.78	+0.9
3,833,644	+		GFF3791	0.78	-2.1
3,833,652	-		GFF3791	0.79	-0.4
3,833,652	-		GFF3791	0.79	-1.0
3,833,670	+		GFF3791	0.79	-2.6
3,833,709	+		GFF3791	0.81	+0.8
3,833,711	+		GFF3791	0.81	-0.3
3,833,717	-		GFF3791	0.81	-0.6
3,833,717	-		GFF3791	0.81	+0.1
3,833,717	-		GFF3791	0.81	-1.4
3,833,719	-		GFF3791	0.81	+0.3
3,833,732	+		GFF3791	0.82	-0.1
3,833,735	+		GFF3791	0.82	-1.3
3,833,740	-		GFF3791	0.82	-0.5
3,833,740	-		GFF3791	0.82	+0.3
3,833,743	-		GFF3791	0.82	+0.3
3,833,774	-		GFF3791	0.83	-0.1
3,833,774	-		GFF3791	0.83	+0.8
3,833,776	+		GFF3791	0.83	+0.6
3,833,776	+		GFF3791	0.83	-1.0
3,833,778	-		GFF3791	0.84	-2.2
3,833,782	+		GFF3791	0.84	-0.5
3,833,784	-		GFF3791	0.84	-1.2
3,833,786	+		GFF3791	0.84	+0.1
3,833,793	+		GFF3791	0.84	-2.0
3,833,794	-		GFF3791	0.84	-0.8
3,833,799	+		GFF3791	0.84	-0.2
3,833,799	+		GFF3791	0.84	-0.6
3,833,799	+		GFF3791	0.84	-0.5
3,833,799	+		GFF3791	0.84	-0.6
3,833,799	+		GFF3791	0.84	+0.2
3,833,799	+		GFF3791	0.84	-0.6
3,833,799	+		GFF3791	0.84	-1.0
3,833,799	+		GFF3791	0.84	-1.3
3,833,799	+		GFF3791	0.84	+0.6
3,833,799	+		GFF3791	0.84	+0.3
3,833,799	+		GFF3791	0.84	+0.3
3,833,801	-		GFF3791	0.84	-2.3
3,833,807	-		GFF3791	0.85	-2.3
3,833,807	-		GFF3791	0.85	-2.8
3,833,807	-		GFF3791	0.85	+0.0
3,833,807	-		GFF3791	0.85	+1.3
3,833,807	-		GFF3791	0.85	-2.1
3,833,807	-		GFF3791	0.85	+1.1
3,833,809	+		GFF3791	0.85	+0.4
3,833,809	-		GFF3791	0.85	+0.3
3,833,814	+		GFF3791	0.85	+1.2
3,833,821	+		GFF3791	0.85	+0.7
3,833,829	-		GFF3791	0.86	+0.4
3,833,829	-		GFF3791	0.86	-0.9
3,833,855	-		GFF3791	0.87	-0.4
3,833,859	+		GFF3791	0.87	+1.7
3,833,859	+		GFF3791	0.87	+0.9
3,833,881	+		GFF3791	0.88	-1.0
3,833,881	+		GFF3791	0.88	+0.6
3,833,894	-		GFF3791	0.88	-1.6
3,833,904	-		GFF3791	0.88	+0.6
3,833,904	-		GFF3791	0.88	+0.3
3,833,925	+		GFF3791	0.89	+0.8
3,833,930	+		GFF3791	0.89	+0.0
3,833,931	-		GFF3791	0.90	-0.1
3,833,933	-		GFF3791	0.90	-0.6
3,833,933	-		GFF3791	0.90	+0.3
3,833,936	+		GFF3791	0.90	+0.4
3,833,936	+		GFF3791	0.90	-2.1
3,833,936	+		GFF3791	0.90	+0.9
3,833,938	-		GFF3791	0.90	-0.7
3,833,943	-				-3.3
3,833,950	+				+0.4
3,833,951	+				-0.5
3,833,951	+				+1.2
3,833,959	+				-0.7
3,833,959	-				-1.1
3,833,959	-				-1.4
3,833,959	-				-0.3
3,833,959	-				-0.4
3,833,961	+				+0.1
3,833,966	+				+0.6
3,833,966	+				+1.1
3,833,967	+				-0.4
3,833,974	-				+0.5
3,833,975	-				+0.3
3,833,979	-				-0.1
3,833,982	+				-0.7
3,833,982	+				-1.4
3,833,985	-				+0.1
3,833,990	-				-0.2
3,833,992	+				+0.1
3,833,997	+				-0.1
3,834,002	+				-0.4
3,834,002	+				+0.2
3,834,002	+				-1.3
3,834,010	-				+1.6
3,834,013	-				-1.9
3,834,015	-				+0.4
3,834,015	-				+1.5
3,834,018	+				-0.3
3,834,018	+				-0.7
3,834,023	+				+1.6
3,834,023	+				+0.1
3,834,026	-				-0.7
3,834,026	-				-0.8
3,834,026	-				-0.8
3,834,031	-				-2.2
3,834,031	-				-0.7
3,834,071	+				-0.5
3,834,091	-				-0.9
3,834,096	-				-1.2
3,834,116	+				-1.2
3,834,155	-				-1.7
3,834,243	+				-0.9
3,834,459	+				-0.6
3,834,492	+				+0.0
3,834,495	-				-2.3
3,834,495	-				+1.3
3,834,495	-				-0.4
3,834,495	-				-1.5
3,834,498	+				+0.7
3,834,498	+				-0.3
3,834,505	-				+0.5
3,834,506	-				+0.4
3,834,506	-				-1.7
3,834,511	-				+0.1
3,834,531	+		GFF3792	0.13	-0.2
3,834,531	+		GFF3792	0.13	+0.7
3,834,532	-		GFF3792	0.13	-1.0
3,834,532	-		GFF3792	0.13	+0.3
3,834,536	+		GFF3792	0.13	-1.3
3,834,538	-		GFF3792	0.14	-0.3
3,834,539	-		GFF3792	0.14	+0.3
3,834,539	-		GFF3792	0.14	-0.1
3,834,539	-		GFF3792	0.14	-0.9
3,834,539	-		GFF3792	0.14	-0.1
3,834,539	-		GFF3792	0.14	+0.9
3,834,543	+		GFF3792	0.15	-2.1
3,834,551	-		GFF3792	0.16	+0.1
3,834,553	+		GFF3792	0.16	-0.2
3,834,554	-		GFF3792	0.16	+1.5
3,834,558	+		GFF3792	0.17	-0.9
3,834,558	+		GFF3792	0.17	-1.4
3,834,560	+		GFF3792	0.17	+0.1
3,834,560	+		GFF3792	0.17	-0.2
3,834,560	+		GFF3792	0.17	+0.3
3,834,579	+		GFF3792	0.20	-0.2
3,834,581	-		GFF3792	0.21	-0.9
3,834,584	+		GFF3792	0.21	+0.2
3,834,587	-		GFF3792	0.22	+1.3
3,834,597	-		GFF3792	0.23	-0.1
3,834,599	+		GFF3792	0.23	-1.7
3,834,604	+		GFF3792	0.24	-0.5
3,834,611	+		GFF3792	0.25	-0.8
3,834,611	+		GFF3792	0.25	-0.5
3,834,611	+		GFF3792	0.25	+0.5
3,834,617	+		GFF3792	0.26	-2.1
3,834,618	+		GFF3792	0.26	-0.3
3,834,618	+		GFF3792	0.26	-1.7
3,834,619	+		GFF3792	0.27	-1.6
3,834,619	-		GFF3792	0.27	+0.0
3,834,634	+		GFF3792	0.29	+0.6
3,834,641	-		GFF3792	0.30	-0.1
3,834,642	-		GFF3792	0.30	+0.7
3,834,642	-		GFF3792	0.30	+0.8
3,834,653	-		GFF3792	0.32	-0.2
3,834,653	-		GFF3792	0.32	-2.0
3,834,654	+		GFF3792	0.32	-0.1
3,834,657	-		GFF3792	0.33	-2.0
3,834,661	-		GFF3792	0.33	+0.4
3,834,666	+		GFF3792	0.34	-0.8
3,834,666	+		GFF3792	0.34	-0.3
3,834,666	+		GFF3792	0.34	-1.3
3,834,667	-		GFF3792	0.34	+1.4
3,834,668	-		GFF3792	0.34	-0.4
3,834,668	-		GFF3792	0.34	-0.1
3,834,671	+		GFF3792	0.35	+0.6
3,834,671	+		GFF3792	0.35	+0.1
3,834,671	+		GFF3792	0.35	-0.6
3,834,674	-		GFF3792	0.35	+0.3
3,834,679	-		GFF3792	0.36	-1.2
3,834,679	-		GFF3792	0.36	+0.6
3,834,679	-		GFF3792	0.36	+0.0
3,834,679	-		GFF3792	0.36	+0.0
3,834,679	-		GFF3792	0.36	-1.4
3,834,679	-		GFF3792	0.36	-1.7
3,834,700	+		GFF3792	0.40	-0.3
3,834,701	+		GFF3792	0.40	+1.6
3,834,701	+		GFF3792	0.40	-1.1
3,834,701	+		GFF3792	0.40	-1.0
3,834,709	-		GFF3792	0.41	-0.2
3,834,709	-		GFF3792	0.41	+1.7
3,834,718	-		GFF3792	0.42	-0.5
3,834,718	-		GFF3792	0.42	+0.4
3,834,751	-		GFF3792	0.48	-1.2
3,834,761	-		GFF3792	0.49	+0.5
3,834,771	-		GFF3792	0.51	-2.1
3,834,790	+		GFF3792	0.54	-1.7
3,834,796	+		GFF3792	0.55	+0.0
3,834,798	-		GFF3792	0.55	-0.7
3,834,800	+		GFF3792	0.56	+1.2
3,834,803	-		GFF3792	0.56	-0.1
3,834,805	+		GFF3792	0.56	-1.8
3,834,824	+		GFF3792	0.59	+0.2
3,834,824	+		GFF3792	0.59	-0.7
3,834,824	+		GFF3792	0.59	-0.1
3,834,832	+		GFF3792	0.61	+0.7
3,834,832	-		GFF3792	0.61	-0.3
3,834,832	-		GFF3792	0.61	+0.7
3,834,832	-		GFF3792	0.61	-0.7
3,834,848	-		GFF3792	0.63	+0.3
3,834,848	-		GFF3792	0.63	+1.7
3,834,877	-		GFF3792	0.68	-0.5
3,834,882	-		GFF3792	0.69	-1.2
3,834,882	-		GFF3792	0.69	+1.8
3,834,882	-		GFF3792	0.69	-0.0
3,834,887	-		GFF3792	0.69	-0.7
3,834,929	-		GFF3792	0.76	+1.1
3,834,944	+		GFF3792	0.78	+0.2
3,834,944	+		GFF3792	0.78	-1.2
3,834,953	-		GFF3792	0.80	-1.7
3,834,983	+		GFF3792	0.85	-0.3
3,834,989	+		GFF3792	0.86	+0.3
3,834,989	+		GFF3792	0.86	-1.8
3,834,997	-		GFF3792	0.87	+0.9
3,834,997	-		GFF3792	0.87	+0.4
3,834,997	-		GFF3792	0.87	+0.1
3,835,007	+		GFF3792	0.89	+0.3
3,835,012	+		GFF3792	0.89	+1.1
3,835,029	+				+0.1
3,835,051	+				-0.4
3,835,061	+				-1.3
3,835,084	-				-1.2
3,835,086	+				-1.0
3,835,094	-				-1.7
3,835,094	-				-1.4
3,835,097	+				+0.2
3,835,097	+				-1.7
3,835,105	-				-1.7
3,835,105	-				-1.8
3,835,105	-				-2.0
3,835,112	+				-1.7
3,835,152	-				-2.1
3,835,178	+				-1.3
3,835,187	+				-0.7
3,835,199	+				-1.6
3,835,207	-				-0.9
3,835,232	+				-1.4
3,835,232	+				-1.7
3,835,240	-		GFF3793	0.10	-2.3
3,835,254	+		GFF3793	0.11	-2.4
3,835,259	+		GFF3793	0.12	-1.4
3,835,272	+		GFF3793	0.13	-2.7
3,835,275	-		GFF3793	0.13	-2.5
3,835,280	-		GFF3793	0.13	-1.8
3,835,321	+		GFF3793	0.16	-0.4
3,835,321	+		GFF3793	0.16	-1.6
3,835,329	-		GFF3793	0.17	-2.7
3,835,355	-		GFF3793	0.19	-2.1
3,835,363	-		GFF3793	0.19	-1.4
3,835,392	+		GFF3793	0.21	-1.7
3,835,392	+		GFF3793	0.21	-1.4
3,835,394	+		GFF3793	0.22	-1.3
3,835,394	+		GFF3793	0.22	-1.7
3,835,394	+		GFF3793	0.22	-1.7
3,835,394	+		GFF3793	0.22	-2.3
3,835,394	+		GFF3793	0.22	-2.1
3,835,394	+		GFF3793	0.22	-1.6
3,835,394	+		GFF3793	0.22	-1.2
3,835,394	+		GFF3793	0.22	-1.0
3,835,394	+		GFF3793	0.22	-1.7
3,835,402	-		GFF3793	0.22	-1.1
3,835,402	-		GFF3793	0.22	-2.1
3,835,402	-		GFF3793	0.22	-2.8
3,835,402	-		GFF3793	0.22	-0.8
3,835,402	-		GFF3793	0.22	-0.2
3,835,410	-		GFF3793	0.23	-2.2
3,835,414	+		GFF3793	0.23	-1.6
3,835,422	-		GFF3793	0.24	-2.0
3,835,458	+		GFF3793	0.26	-1.7
3,835,474	+		GFF3793	0.27	-1.2
3,835,489	+		GFF3793	0.29	-0.1
3,835,513	+		GFF3793	0.30	-2.1
3,835,521	+		GFF3793	0.31	-1.2
3,835,521	+		GFF3793	0.31	-1.7
3,835,546	+		GFF3793	0.33	-1.3
3,835,552	+		GFF3793	0.33	-1.6
3,835,564	-		GFF3793	0.34	-1.5
3,835,678	+		GFF3793	0.42	-1.2
3,835,688	+		GFF3793	0.43	-1.1
3,835,688	+		GFF3793	0.43	-0.3
3,835,691	-		GFF3793	0.43	-1.8
3,835,696	-		GFF3793	0.44	-0.3
3,835,731	+		GFF3793	0.46	-1.3
3,835,731	+		GFF3793	0.46	-1.9
3,835,736	+		GFF3793	0.47	-1.8
3,835,739	-		GFF3793	0.47	-1.6
3,835,752	+		GFF3793	0.48	-2.2
3,835,752	+		GFF3793	0.48	-2.3
3,835,760	-		GFF3793	0.48	-1.9
3,835,761	+		GFF3793	0.48	-2.2
3,835,761	+		GFF3793	0.48	-1.2
3,835,761	+		GFF3793	0.48	-2.8
3,835,769	-		GFF3793	0.49	-1.6
3,835,771	+		GFF3793	0.49	+0.6
3,835,773	+		GFF3793	0.49	-2.8
3,835,774	-		GFF3793	0.49	-2.7
3,835,801	+		GFF3793	0.51	-2.8
3,835,815	+		GFF3793	0.52	-2.4
3,835,820	+		GFF3793	0.53	-1.7
3,835,843	-		GFF3793	0.54	-1.6
3,835,869	+		GFF3793	0.56	-0.2
3,835,872	-		GFF3793	0.57	-1.4
3,835,875	+		GFF3793	0.57	-1.7
3,835,877	-		GFF3793	0.57	-0.1
3,835,885	+		GFF3793	0.58	-1.2
3,835,942	+		GFF3793	0.62	-1.8
3,835,951	+		GFF3793	0.62	-2.9
3,835,988	-		GFF3793	0.65	-2.6
3,836,006	+		GFF3793	0.66	-1.7
3,836,014	-		GFF3793	0.67	-0.7
3,836,016	+		GFF3793	0.67	-1.7
3,836,033	+		GFF3793	0.68	-2.2
3,836,038	+		GFF3793	0.69	-2.2
3,836,038	+		GFF3793	0.69	-1.4
3,836,046	-		GFF3793	0.69	-1.7
3,836,046	-		GFF3793	0.69	-1.3
3,836,046	-		GFF3793	0.69	-2.1
3,836,046	-		GFF3793	0.69	-1.2
3,836,048	+		GFF3793	0.69	-1.4