Strain Fitness in Sphingobium sp. HT1-2 around GFF3790

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,830,503	-		GFF3789	0.15	+0.4
3,830,505	+		GFF3789	0.15	+0.3
3,830,510	+		GFF3789	0.15	-1.7
3,830,523	-		GFF3789	0.16	-1.7
3,830,523	-		GFF3789	0.16	-0.2
3,830,527	+		GFF3789	0.17	+0.4
3,830,557	+		GFF3789	0.19	-0.8
3,830,557	+		GFF3789	0.19	+1.7
3,830,559	-		GFF3789	0.19	+0.2
3,830,565	-		GFF3789	0.20	-1.2
3,830,565	-		GFF3789	0.20	-1.3
3,830,579	+		GFF3789	0.21	-0.1
3,830,584	+		GFF3789	0.22	-0.9
3,830,584	+		GFF3789	0.22	+0.3
3,830,584	+		GFF3789	0.22	+1.2
3,830,584	+		GFF3789	0.22	-1.7
3,830,584	+		GFF3789	0.22	-0.4
3,830,584	+		GFF3789	0.22	-0.7
3,830,587	-		GFF3789	0.22	-0.3
3,830,587	-		GFF3789	0.22	+0.0
3,830,590	+		GFF3789	0.22	-0.2
3,830,591	+		GFF3789	0.22	-0.8
3,830,591	+		GFF3789	0.22	-0.2
3,830,591	+		GFF3789	0.22	-0.3
3,830,591	+		GFF3789	0.22	-0.6
3,830,592	-		GFF3789	0.22	-2.1
3,830,592	-		GFF3789	0.22	+0.3
3,830,592	-		GFF3789	0.22	-0.2
3,830,592	-		GFF3789	0.22	-2.1
3,830,592	-		GFF3789	0.22	-0.3
3,830,592	-		GFF3789	0.22	-0.7
3,830,592	-		GFF3789	0.22	-1.3
3,830,592	-		GFF3789	0.22	-0.7
3,830,592	-		GFF3789	0.22	-0.1
3,830,592	-		GFF3789	0.22	-1.3
3,830,592	-		GFF3789	0.22	-0.9
3,830,592	-		GFF3789	0.22	-0.6
3,830,592	-		GFF3789	0.22	-0.2
3,830,599	-		GFF3789	0.23	+1.0
3,830,599	-		GFF3789	0.23	-0.1
3,830,610	+		GFF3789	0.24	+0.1
3,830,610	+		GFF3789	0.24	-0.3
3,830,615	+		GFF3789	0.24	-1.9
3,830,618	-		GFF3789	0.25	-1.1
3,830,625	+		GFF3789	0.25	-0.1
3,830,625	+		GFF3789	0.25	-0.4
3,830,629	+		GFF3789	0.26	-0.3
3,830,629	+		GFF3789	0.26	-1.0
3,830,629	+		GFF3789	0.26	-1.2
3,830,629	+		GFF3789	0.26	-0.6
3,830,629	+		GFF3789	0.26	-0.5
3,830,629	+		GFF3789	0.26	-1.1
3,830,629	+		GFF3789	0.26	+0.4
3,830,632	-		GFF3789	0.26	+0.3
3,830,633	-		GFF3789	0.26	-1.3
3,830,633	-		GFF3789	0.26	-0.7
3,830,637	-		GFF3789	0.26	+0.4
3,830,692	+		GFF3789	0.31	-1.2
3,830,695	-		GFF3789	0.31	-1.0
3,830,695	-		GFF3789	0.31	+0.7
3,830,699	+		GFF3789	0.32	-0.7
3,830,700	-		GFF3789	0.32	-0.0
3,830,712	+		GFF3789	0.33	-0.6
3,830,720	+		GFF3789	0.34	+0.9
3,830,766	-		GFF3789	0.38	-0.4
3,830,775	+		GFF3789	0.38	+0.1
3,830,776	+		GFF3789	0.39	+0.0
3,830,776	-		GFF3789	0.39	-0.4
3,830,783	+		GFF3789	0.39	-0.1
3,830,785	-		GFF3789	0.39	-0.5
3,830,796	+		GFF3789	0.40	-1.3
3,830,801	+		GFF3789	0.41	-1.3
3,830,804	-		GFF3789	0.41	+0.0
3,830,804	-		GFF3789	0.41	-0.7
3,830,804	-		GFF3789	0.41	+0.6
3,830,804	-		GFF3789	0.41	-1.1
3,830,806	+		GFF3789	0.41	-1.1
3,830,806	+		GFF3789	0.41	-1.3
3,830,809	-		GFF3789	0.41	-1.0
3,830,814	-		GFF3789	0.42	-1.5
3,830,816	+		GFF3789	0.42	-2.6
3,830,821	+		GFF3789	0.42	-0.9
3,830,823	+		GFF3789	0.43	-0.6
3,830,827	+		GFF3789	0.43	+0.1
3,830,827	+		GFF3789	0.43	-0.3
3,830,828	+		GFF3789	0.43	+0.1
3,830,840	+		GFF3789	0.44	-2.1
3,830,848	-		GFF3789	0.45	+1.4
3,830,850	+		GFF3789	0.45	-0.0
3,830,850	+		GFF3789	0.45	-3.2
3,830,850	+		GFF3789	0.45	+1.5
3,830,853	-		GFF3789	0.45	+1.2
3,830,858	-		GFF3789	0.46	-0.5
3,830,858	-		GFF3789	0.46	-0.2
3,830,858	-		GFF3789	0.46	-0.7
3,830,905	+		GFF3789	0.50	-1.8
3,830,905	+		GFF3789	0.50	-0.2
3,830,910	+		GFF3789	0.50	+1.0
3,830,913	-		GFF3789	0.51	+0.6
3,830,913	-		GFF3789	0.51	+0.7
3,830,913	-		GFF3789	0.51	+1.6
3,830,913	-		GFF3789	0.51	-2.1
3,830,914	-		GFF3789	0.51	+0.4
3,830,922	+		GFF3789	0.51	-0.6
3,830,927	+		GFF3789	0.52	-0.1
3,830,982	+		GFF3789	0.57	-1.4
3,830,982	+		GFF3789	0.57	+1.3
3,830,990	-		GFF3789	0.57	-1.2
3,831,040	+		GFF3789	0.62	+0.3
3,831,041	+		GFF3789	0.62	+0.4
3,831,049	-		GFF3789	0.63	-0.6
3,831,072	+		GFF3789	0.65	+0.2
3,831,080	-		GFF3789	0.65	+0.0
3,831,094	+		GFF3789	0.66	-1.4
3,831,104	+		GFF3789	0.67	-0.5
3,831,104	+		GFF3789	0.67	-0.6
3,831,112	-		GFF3789	0.68	+0.4
3,831,112	-		GFF3789	0.68	-0.4
3,831,132	-		GFF3789	0.70	+0.3
3,831,132	-		GFF3789	0.70	+0.7
3,831,139	-		GFF3789	0.70	-0.7
3,831,151	+		GFF3789	0.72	-0.1
3,831,151	+		GFF3789	0.72	-2.2
3,831,151	+		GFF3789	0.72	+0.9
3,831,151	+		GFF3789	0.72	-0.7
3,831,151	+		GFF3789	0.72	+0.5
3,831,151	+		GFF3789	0.72	-0.3
3,831,151	+		GFF3789	0.72	-3.0
3,831,152	+		GFF3789	0.72	+1.1
3,831,152	+		GFF3789	0.72	-0.2
3,831,156	+		GFF3789	0.72	+0.4
3,831,159	-		GFF3789	0.72	+0.3
3,831,159	-		GFF3789	0.72	-1.9
3,831,159	-		GFF3789	0.72	+0.0
3,831,159	-		GFF3789	0.72	-1.2
3,831,160	-		GFF3789	0.72	-2.5
3,831,160	-		GFF3789	0.72	-0.8
3,831,160	-		GFF3789	0.72	+0.7
3,831,160	-		GFF3789	0.72	+0.1
3,831,162	+		GFF3789	0.72	-1.0
3,831,168	+		GFF3789	0.73	+0.6
3,831,170	-		GFF3789	0.73	+1.1
3,831,186	-		GFF3789	0.75	+0.6
3,831,217	+		GFF3789	0.77	+0.7
3,831,225	-		GFF3789	0.78	+0.6
3,831,243	+		GFF3789	0.80	+0.0
3,831,248	+		GFF3789	0.80	-2.0
3,831,248	+		GFF3789	0.80	+0.4
3,831,248	+		GFF3789	0.80	-1.4
3,831,248	+		GFF3789	0.80	-1.1
3,831,248	+		GFF3789	0.80	-1.7
3,831,248	+		GFF3789	0.80	-2.6
3,831,251	-		GFF3789	0.80	-1.7
3,831,251	-		GFF3789	0.80	-1.6
3,831,251	-		GFF3789	0.80	+0.3
3,831,256	-		GFF3789	0.81	+0.7
3,831,256	-		GFF3789	0.81	+0.6
3,831,256	-		GFF3789	0.81	-0.7
3,831,267	-		GFF3789	0.82	-1.6
3,831,276	+		GFF3789	0.82	+1.0
3,831,284	-		GFF3789	0.83	+1.3
3,831,302	+		GFF3789	0.85	-0.2
3,831,325	-		GFF3789	0.87	-0.9
3,831,325	-		GFF3789	0.87	-0.3
3,831,336	+		GFF3789	0.88	+0.2
3,831,342	-		GFF3789	0.88	+1.1
3,831,351	-		GFF3789	0.89	-0.1
3,831,377	+				-1.0
3,831,381	+				-2.3
3,831,381	+				-1.5
3,831,381	+				-1.0
3,831,381	+				-0.7
3,831,381	+				-0.5
3,831,381	+				+0.9
3,831,388	+				+0.1
3,831,389	-				-0.1
3,831,389	-				-0.6
3,831,389	-				-0.3
3,831,393	+				-0.9
3,831,396	-				+0.3
3,831,396	-				+0.0
3,831,404	+				+0.3
3,831,418	+				-0.0
3,831,438	+				+0.8
3,831,438	-				-0.0
3,831,441	-				-1.7
3,831,443	+				-0.1
3,831,447	+				+0.6
3,831,447	+				-0.1
3,831,447	+				+0.1
3,831,455	-				-0.4
3,831,455	-				-1.9
3,831,487	+				+1.3
3,831,487	+				-1.3
3,831,495	-				+0.3
3,831,496	+				+0.9
3,831,520	+		GFF3790	0.20	+0.3
3,831,527	+		GFF3790	0.25	-0.1
3,831,529	-		GFF3790	0.27	-0.5
3,831,548	-		GFF3790	0.41	-0.1
3,831,556	+		GFF3790	0.47	-0.2
3,831,565	+		GFF3790	0.53	-0.7
3,831,566	+		GFF3790	0.54	+0.1
3,831,610	-		GFF3790	0.87	+0.3
3,831,613	+		GFF3790	0.89	-0.4
3,831,621	+				+1.6
3,831,621	+				-0.9
3,831,621	+				-1.9
3,831,621	+				+0.2
3,831,621	+				-0.4
3,831,621	+				+0.3
3,831,621	+				-1.2
3,831,621	+				+0.4
3,831,629	-				+0.6
3,831,629	-				-0.3
3,831,629	-				-2.1
3,831,629	-				-0.7
3,831,629	-				-0.6
3,831,629	-				-1.3
3,831,629	-				-0.5
3,831,629	-				-2.1
3,831,629	-				-0.9
3,831,630	+				+0.8
3,831,639	-				-0.3
3,831,653	+				-3.6
3,831,653	+				-2.1
3,831,667	-				-0.8
3,831,669	-				-2.5
3,831,685	-				+0.4
3,831,696	+				-0.1
3,831,717	+				-2.2
3,831,720	-				-0.4
3,831,739	+				-0.3
3,831,748	+				-1.7
3,831,759	+				+0.9
3,831,759	+				-0.4
3,831,767	-				+0.8
3,831,767	-				+1.0
3,831,769	+				+0.0
3,831,776	-				-2.1
3,831,777	-				-0.6
3,831,813	+				-1.1
3,831,813	+				-1.0
3,831,847	-				+0.3
3,831,847	-				-0.8
3,831,850	+				+0.0
3,831,853	-				-0.7
3,831,873	+				+0.8
3,831,873	+				+1.6
3,831,881	-				-0.8
3,831,886	-				+0.4
3,831,887	+				-2.4
3,831,929	-		GFF3791	0.12	+0.2
3,831,929	-		GFF3791	0.12	+0.2
3,831,931	-		GFF3791	0.12	-0.4
3,831,936	-		GFF3791	0.12	+0.1
3,831,966	+		GFF3791	0.13	-0.0
3,831,973	-		GFF3791	0.13	-1.2
3,831,974	-		GFF3791	0.13	+1.6
3,831,974	-		GFF3791	0.13	+0.4
3,831,978	-		GFF3791	0.13	-0.4
3,831,984	-		GFF3791	0.14	-0.1
3,831,989	-		GFF3791	0.14	+0.7
3,832,004	+		GFF3791	0.14	+0.4
3,832,004	+		GFF3791	0.14	-0.2
3,832,021	+		GFF3791	0.15	-2.0
3,832,028	-		GFF3791	0.15	-0.9
3,832,029	-		GFF3791	0.15	+0.9
3,832,048	-		GFF3791	0.16	-0.3
3,832,065	+		GFF3791	0.17	-0.4
3,832,065	+		GFF3791	0.17	+0.8
3,832,073	-		GFF3791	0.17	-2.1
3,832,073	-		GFF3791	0.17	-1.8
3,832,080	+		GFF3791	0.17	+0.8
3,832,083	-		GFF3791	0.18	-0.4
3,832,083	-		GFF3791	0.18	+0.2
3,832,131	+		GFF3791	0.19	-0.3
3,832,132	+		GFF3791	0.19	-0.3
3,832,139	-		GFF3791	0.20	-0.6
3,832,139	-		GFF3791	0.20	-1.3
3,832,140	-		GFF3791	0.20	-0.6
3,832,140	-		GFF3791	0.20	-0.2
3,832,149	-		GFF3791	0.20	+0.5
3,832,156	+		GFF3791	0.20	-1.3
3,832,164	-		GFF3791	0.21	-2.1
3,832,186	-		GFF3791	0.22	-1.8
3,832,193	-		GFF3791	0.22	+0.1
3,832,193	-		GFF3791	0.22	-1.0
3,832,193	-		GFF3791	0.22	-0.9
3,832,193	-		GFF3791	0.22	-1.2
3,832,193	-		GFF3791	0.22	+0.1
3,832,193	-		GFF3791	0.22	+0.4
3,832,210	-		GFF3791	0.23	-1.1
3,832,210	-		GFF3791	0.23	-0.2
3,832,215	-		GFF3791	0.23	+1.1
3,832,215	-		GFF3791	0.23	-1.6
3,832,227	+		GFF3791	0.23	-1.6
3,832,233	-		GFF3791	0.23	-1.9
3,832,235	+		GFF3791	0.23	-1.1
3,832,235	+		GFF3791	0.23	-0.2
3,832,235	+		GFF3791	0.23	+0.0
3,832,235	+		GFF3791	0.23	-0.4
3,832,240	+		GFF3791	0.24	+0.2
3,832,242	+		GFF3791	0.24	-0.4
3,832,243	-		GFF3791	0.24	+2.5
3,832,243	-		GFF3791	0.24	-1.2
3,832,245	+		GFF3791	0.24	-2.3
3,832,245	+		GFF3791	0.24	+0.8
3,832,247	+		GFF3791	0.24	-0.5
3,832,248	-		GFF3791	0.24	+0.9
3,832,255	-		GFF3791	0.24	+0.4
3,832,255	-		GFF3791	0.24	-0.8
3,832,266	-		GFF3791	0.25	-0.2
3,832,281	+		GFF3791	0.25	-0.2
3,832,291	-		GFF3791	0.26	-0.7
3,832,294	-		GFF3791	0.26	+0.4
3,832,294	-		GFF3791	0.26	+1.1
3,832,304	+		GFF3791	0.26	+0.3
3,832,304	+		GFF3791	0.26	+0.7
3,832,312	-		GFF3791	0.26	+1.2
3,832,313	+		GFF3791	0.27	+0.1
3,832,321	-		GFF3791	0.27	-0.1
3,832,321	-		GFF3791	0.27	+0.2
3,832,326	-		GFF3791	0.27	-0.2
3,832,336	-		GFF3791	0.27	-1.4
3,832,401	+		GFF3791	0.30	+1.0
3,832,402	-		GFF3791	0.30	+0.3
3,832,411	+		GFF3791	0.30	-0.2
3,832,455	+		GFF3791	0.32	+0.4
3,832,455	+		GFF3791	0.32	+0.1
3,832,463	+		GFF3791	0.32	+0.3
3,832,463	-		GFF3791	0.32	-1.9
3,832,471	+		GFF3791	0.33	+0.9
3,832,471	+		GFF3791	0.33	-0.4
3,832,471	-		GFF3791	0.33	-0.8
3,832,497	+		GFF3791	0.34	-0.4
3,832,499	+		GFF3791	0.34	-1.8
3,832,499	+		GFF3791	0.34	+1.0
3,832,499	+		GFF3791	0.34	-0.8
3,832,504	+		GFF3791	0.34	-1.0
3,832,505	-		GFF3791	0.34	-0.8
3,832,507	-		GFF3791	0.34	-0.9
3,832,507	-		GFF3791	0.34	-0.5
3,832,507	-		GFF3791	0.34	-1.0
3,832,509	+		GFF3791	0.34	+0.1
3,832,509	+		GFF3791	0.34	+0.0
3,832,514	+		GFF3791	0.34	+2.0
3,832,514	+		GFF3791	0.34	-1.1
3,832,517	-		GFF3791	0.34	-2.0
3,832,522	-		GFF3791	0.35	-2.0
3,832,522	-		GFF3791	0.35	+0.8
3,832,522	-		GFF3791	0.35	-0.7
3,832,583	-		GFF3791	0.37	-0.3
3,832,605	+		GFF3791	0.38	-0.3
3,832,611	-		GFF3791	0.38	-1.9
3,832,623	+		GFF3791	0.39	-1.9