Strain Fitness in Sphingobium sp. HT1-2 around GFF3767

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,802,764	-		GFF3765	0.64	+0.5
3,802,796	-		GFF3765	0.66	-0.1
3,802,811	-		GFF3765	0.67	-1.8
3,802,814	+		GFF3765	0.68	+0.7
3,802,814	+		GFF3765	0.68	+0.1
3,802,822	-		GFF3765	0.68	+0.6
3,802,830	-		GFF3765	0.69	-0.4
3,802,846	-		GFF3765	0.70	+0.0
3,802,865	+		GFF3765	0.71	+0.3
3,802,879	+		GFF3765	0.72	-1.4
3,802,884	+		GFF3765	0.73	-1.9
3,802,900	+		GFF3765	0.74	-0.4
3,802,902	-		GFF3765	0.74	-0.2
3,802,904	+		GFF3765	0.74	+1.8
3,802,906	+		GFF3765	0.74	+0.8
3,802,916	+		GFF3765	0.75	-0.3
3,802,916	+		GFF3765	0.75	-0.1
3,802,916	+		GFF3765	0.75	-0.1
3,802,983	-		GFF3765	0.80	-2.3
3,802,983	-		GFF3765	0.80	-1.4
3,802,983	-		GFF3765	0.80	-0.7
3,802,983	-		GFF3765	0.80	+0.0
3,802,990	+		GFF3765	0.81	+0.9
3,802,994	+		GFF3765	0.81	-3.0
3,802,994	+		GFF3765	0.81	+0.2
3,802,998	-		GFF3765	0.81	+0.8
3,802,998	-		GFF3765	0.81	-0.1
3,803,000	+		GFF3765	0.81	-0.7
3,803,002	-		GFF3765	0.82	+0.7
3,803,006	+		GFF3765	0.82	-0.3
3,803,050	+		GFF3765	0.85	-0.2
3,803,055	+		GFF3765	0.85	-0.9
3,803,058	-		GFF3765	0.86	-0.7
3,803,058	-		GFF3765	0.86	-1.0
3,803,058	-		GFF3765	0.86	-0.8
3,803,059	-		GFF3765	0.86	+0.3
3,803,059	-		GFF3765	0.86	-0.6
3,803,059	-		GFF3765	0.86	+0.4
3,803,081	-		GFF3765	0.87	-1.1
3,803,087	+		GFF3765	0.88	-1.1
3,803,121	+				-0.4
3,803,126	+				-0.1
3,803,141	-				+0.3
3,803,142	-				-0.7
3,803,187	+				-0.6
3,803,216	+				-1.2
3,803,216	+				+0.2
3,803,216	+				+0.4
3,803,222	-				-0.4
3,803,224	-				-1.1
3,803,241	+				-3.2
3,803,250	+				-0.1
3,803,254	-				-1.3
3,803,254	-				-1.0
3,803,255	+				+1.6
3,803,263	-				+1.3
3,803,268	-				-0.2
3,803,279	+				+0.1
3,803,286	+		GFF3766	0.11	+1.2
3,803,308	+		GFF3766	0.17	-0.3
3,803,308	+		GFF3766	0.17	-0.1
3,803,308	+		GFF3766	0.17	-1.7
3,803,308	+		GFF3766	0.17	-0.3
3,803,308	+		GFF3766	0.17	+0.3
3,803,316	+		GFF3766	0.19	-0.2
3,803,316	+		GFF3766	0.19	-1.6
3,803,316	+		GFF3766	0.19	-0.3
3,803,316	+		GFF3766	0.19	-1.6
3,803,316	+		GFF3766	0.19	-1.1
3,803,316	+		GFF3766	0.19	-0.6
3,803,316	-		GFF3766	0.19	+0.5
3,803,316	-		GFF3766	0.19	+0.5
3,803,316	-		GFF3766	0.19	+0.3
3,803,316	-		GFF3766	0.19	-1.9
3,803,316	-		GFF3766	0.19	+0.1
3,803,324	-		GFF3766	0.21	+0.0
3,803,324	-		GFF3766	0.21	-0.8
3,803,324	-		GFF3766	0.21	-0.6
3,803,324	-		GFF3766	0.21	-0.9
3,803,324	-		GFF3766	0.21	+1.3
3,803,336	-		GFF3766	0.25	-0.1
3,803,336	-		GFF3766	0.25	-0.0
3,803,363	-		GFF3766	0.32	-0.2
3,803,363	-		GFF3766	0.32	+1.1
3,803,384	+		GFF3766	0.37	-0.1
3,803,399	+		GFF3766	0.41	-1.3
3,803,399	+		GFF3766	0.41	-0.6
3,803,399	+		GFF3766	0.41	+0.1
3,803,399	+		GFF3766	0.41	-0.1
3,803,407	-		GFF3766	0.43	-2.3
3,803,407	-		GFF3766	0.43	+1.6
3,803,407	-		GFF3766	0.43	-0.3
3,803,407	-		GFF3766	0.43	+0.1
3,803,407	-		GFF3766	0.43	+0.1
3,803,412	+		GFF3766	0.45	+0.4
3,803,413	+		GFF3766	0.45	-1.9
3,803,423	+		GFF3766	0.48	-0.3
3,803,431	-		GFF3766	0.50	-1.8
3,803,431	-		GFF3766	0.50	+0.3
3,803,434	+		GFF3766	0.51	+0.1
3,803,442	-		GFF3766	0.53	+0.5
3,803,442	-		GFF3766	0.53	+0.4
3,803,469	+		GFF3766	0.60	-1.2
3,803,477	-		GFF3766	0.62	-0.9
3,803,477	-		GFF3766	0.62	+1.9
3,803,479	+		GFF3766	0.62	+0.0
3,803,511	+		GFF3766	0.71	-0.6
3,803,532	+		GFF3766	0.76	-0.7
3,803,596	-				-2.3
3,803,641	+				+1.1
3,803,644	+				+1.2
3,803,657	+				-0.5
3,803,665	-				-0.9
3,803,665	-				-0.3
3,803,665	-				-0.8
3,803,669	+				+0.2
3,803,676	-				-0.6
3,803,707	+				+1.0
3,803,714	-				-0.5
3,803,804	+				+1.4
3,803,805	+				-0.7
3,803,820	+				-1.2
3,803,820	+				+1.3
3,803,820	+				-0.9
3,803,828	+				-1.6
3,803,828	-				-0.7
3,803,828	-				-2.8
3,803,828	-				-1.3
3,803,828	-				-0.5
3,803,830	+				+0.3
3,803,830	+				+0.5
3,803,845	+				-3.0
3,803,857	+		GFF3767	0.11	-1.8
3,803,872	+		GFF3767	0.12	-0.4
3,803,908	-		GFF3767	0.16	-1.2
3,803,913	-		GFF3767	0.17	-0.5
3,803,918	+		GFF3767	0.18	+0.7
3,803,918	+		GFF3767	0.18	-2.0
3,803,918	+		GFF3767	0.18	-1.6
3,803,926	-		GFF3767	0.18	-0.6
3,803,936	-		GFF3767	0.20	+0.1
3,803,951	-		GFF3767	0.21	-2.3
3,803,952	+		GFF3767	0.21	-1.2
3,803,964	-		GFF3767	0.23	-1.1
3,803,977	+		GFF3767	0.24	-0.7
3,803,977	+		GFF3767	0.24	-1.4
3,803,977	+		GFF3767	0.24	+0.4
3,803,977	+		GFF3767	0.24	-0.6
3,803,977	+		GFF3767	0.24	+0.4
3,803,977	+		GFF3767	0.24	-0.3
3,803,977	+		GFF3767	0.24	+0.0
3,803,977	+		GFF3767	0.24	+0.8
3,803,977	+		GFF3767	0.24	-1.3
3,803,977	+		GFF3767	0.24	-2.4
3,803,977	+		GFF3767	0.24	-1.3
3,803,977	+		GFF3767	0.24	+0.6
3,803,977	+		GFF3767	0.24	-0.6
3,803,977	+		GFF3767	0.24	+0.5
3,803,985	-		GFF3767	0.25	-2.3
3,803,985	-		GFF3767	0.25	+0.7
3,803,985	-		GFF3767	0.25	+0.2
3,803,985	-		GFF3767	0.25	-0.2
3,803,985	-		GFF3767	0.25	-1.0
3,803,985	-		GFF3767	0.25	+1.1
3,803,985	-		GFF3767	0.25	-1.2
3,803,985	-		GFF3767	0.25	-0.2
3,803,985	-		GFF3767	0.25	-1.3
3,803,985	-		GFF3767	0.25	+1.0
3,803,985	-		GFF3767	0.25	-0.4
3,803,985	-		GFF3767	0.25	-1.3
3,803,985	-		GFF3767	0.25	+0.4
3,803,987	-		GFF3767	0.25	-0.2
3,803,997	+		GFF3767	0.26	-0.6
3,804,033	-		GFF3767	0.30	+0.3
3,804,047	+		GFF3767	0.32	-1.9
3,804,051	+		GFF3767	0.32	-1.7
3,804,055	+		GFF3767	0.33	-0.4
3,804,058	+		GFF3767	0.33	-0.4
3,804,063	-		GFF3767	0.34	-1.4
3,804,086	+		GFF3767	0.36	-1.4
3,804,094	-		GFF3767	0.37	-0.1
3,804,094	-		GFF3767	0.37	+0.0
3,804,094	-		GFF3767	0.37	+0.3
3,804,094	-		GFF3767	0.37	+1.4
3,804,094	-		GFF3767	0.37	+0.5
3,804,094	-		GFF3767	0.37	-3.5
3,804,094	-		GFF3767	0.37	+1.4
3,804,094	-		GFF3767	0.37	+0.7
3,804,096	+		GFF3767	0.37	-1.6
3,804,096	+		GFF3767	0.37	-0.2
3,804,096	+		GFF3767	0.37	-2.8
3,804,096	-		GFF3767	0.37	-0.4
3,804,099	-		GFF3767	0.38	-0.6
3,804,104	-		GFF3767	0.38	-0.6
3,804,114	+		GFF3767	0.40	-1.3
3,804,121	-		GFF3767	0.40	-1.4
3,804,236	-		GFF3767	0.53	+0.8
3,804,238	+		GFF3767	0.53	-0.8
3,804,241	+		GFF3767	0.54	+1.0
3,804,265	+		GFF3767	0.56	-0.6
3,804,266	+		GFF3767	0.57	-1.2
3,804,274	-		GFF3767	0.57	-0.3
3,804,332	+		GFF3767	0.64	+0.7
3,804,343	+		GFF3767	0.65	+0.3
3,804,351	-		GFF3767	0.66	-0.0
3,804,414	+		GFF3767	0.73	-2.3
3,804,442	+		GFF3767	0.76	-2.1
3,804,442	+		GFF3767	0.76	-0.2
3,804,442	+		GFF3767	0.76	+0.3
3,804,443	+		GFF3767	0.76	-0.2
3,804,492	+		GFF3767	0.82	+0.6
3,804,507	+		GFF3767	0.84	+0.5
3,804,525	-		GFF3767	0.86	-0.1
3,804,563	+		GFF3767	0.90	-2.2
3,804,580	+				-1.0
3,804,582	-				-0.1
3,804,610	+				+1.1
3,804,620	+				-3.0
3,804,636	-				+1.0
3,804,638	-				+0.3
3,804,646	+				-0.9
3,804,651	+				-0.4
3,804,687	+				+1.0
3,804,687	+				+1.0
3,804,695	-				-1.4
3,804,698	-				+1.3
3,804,714	-				-0.1
3,804,728	+				-3.4
3,804,736	+				+1.3
3,804,739	-				-1.7
3,804,751	+				-0.2
3,804,757	+				+0.1
3,804,779	+				-0.8
3,804,787	+				-1.2
3,804,787	-				+0.9
3,804,787	-				-1.4
3,804,787	-				-0.4
3,804,787	-				+0.2
3,804,804	+				-0.5
3,804,812	-				+0.7
3,804,812	-				-1.4
3,804,821	+				+0.6
3,804,829	-				+1.1
3,804,834	+				-0.2
3,804,852	+		GFF3768	0.11	-1.9
3,804,852	+		GFF3768	0.11	+0.2
3,804,859	+		GFF3768	0.11	+0.3
3,804,860	-		GFF3768	0.11	-1.4
3,804,861	-		GFF3768	0.11	-0.3
3,804,867	-		GFF3768	0.11	-0.1
3,804,867	-		GFF3768	0.11	-0.0
3,804,867	-		GFF3768	0.11	-0.6
3,804,892	+		GFF3768	0.13	-0.6
3,804,900	-		GFF3768	0.13	-1.6
3,804,900	-		GFF3768	0.13	-1.8
3,804,901	+		GFF3768	0.13	-0.1
3,804,904	-		GFF3768	0.13	+0.9
3,804,915	+		GFF3768	0.14	-0.5
3,804,916	+		GFF3768	0.14	+0.1
3,804,922	+		GFF3768	0.14	-0.5
3,804,922	+		GFF3768	0.14	-1.2
3,804,924	-		GFF3768	0.15	+1.0
3,804,937	+		GFF3768	0.15	+0.8
3,804,940	-		GFF3768	0.15	+0.4
3,804,940	-		GFF3768	0.15	-0.6
3,804,940	-		GFF3768	0.15	+0.8
3,804,942	+		GFF3768	0.16	-0.2
3,804,946	+		GFF3768	0.16	-0.7
3,804,947	+		GFF3768	0.16	-0.2
3,804,951	+		GFF3768	0.16	+0.4
3,804,954	+		GFF3768	0.16	-0.4
3,804,974	+		GFF3768	0.17	+0.7
3,804,974	+		GFF3768	0.17	-2.0
3,804,979	+		GFF3768	0.18	-1.5
3,804,979	+		GFF3768	0.18	-0.0
3,804,982	-		GFF3768	0.18	-1.2
3,804,982	-		GFF3768	0.18	-0.4
3,804,993	-		GFF3768	0.18	+0.4
3,805,073	-		GFF3768	0.23	-1.5
3,805,091	+		GFF3768	0.24	-0.2
3,805,108	-		GFF3768	0.24	+0.7
3,805,109	-		GFF3768	0.25	-0.8
3,805,109	-		GFF3768	0.25	-0.2
3,805,118	+		GFF3768	0.25	+0.3
3,805,126	-		GFF3768	0.25	+1.5
3,805,133	+		GFF3768	0.26	+1.0
3,805,140	+		GFF3768	0.26	-0.5
3,805,140	+		GFF3768	0.26	-1.0
3,805,141	-		GFF3768	0.26	-0.1
3,805,141	-		GFF3768	0.26	+0.0
3,805,143	-		GFF3768	0.26	-1.1
3,805,143	-		GFF3768	0.26	-2.2
3,805,143	-		GFF3768	0.26	-1.7
3,805,143	-		GFF3768	0.26	-0.3
3,805,148	-		GFF3768	0.27	+0.9
3,805,165	-		GFF3768	0.28	-0.3
3,805,179	-		GFF3768	0.28	-2.3
3,805,189	-		GFF3768	0.29	+0.3
3,805,190	+		GFF3768	0.29	-0.1
3,805,190	+		GFF3768	0.29	-0.8
3,805,196	+		GFF3768	0.29	-0.4
3,805,196	+		GFF3768	0.29	-1.0
3,805,198	-		GFF3768	0.29	-0.6
3,805,198	-		GFF3768	0.29	+0.3
3,805,198	-		GFF3768	0.29	-1.5
3,805,198	-		GFF3768	0.29	+0.1
3,805,201	+		GFF3768	0.30	+1.8
3,805,206	+		GFF3768	0.30	-1.5
3,805,246	+		GFF3768	0.32	+0.8
3,805,246	+		GFF3768	0.32	-0.9
3,805,246	+		GFF3768	0.32	-0.4
3,805,246	+		GFF3768	0.32	-1.0
3,805,246	+		GFF3768	0.32	+0.4
3,805,246	+		GFF3768	0.32	+1.0
3,805,246	+		GFF3768	0.32	-0.1
3,805,246	+		GFF3768	0.32	+0.7
3,805,246	+		GFF3768	0.32	-0.6
3,805,246	+		GFF3768	0.32	+0.8
3,805,246	+		GFF3768	0.32	+0.3
3,805,246	+		GFF3768	0.32	-0.8
3,805,246	+		GFF3768	0.32	+1.2
3,805,246	+		GFF3768	0.32	+0.8
3,805,246	+		GFF3768	0.32	+0.1
3,805,246	+		GFF3768	0.32	-0.1
3,805,246	+		GFF3768	0.32	+0.5
3,805,251	+		GFF3768	0.32	+1.6
3,805,254	-		GFF3768	0.32	-0.9
3,805,254	-		GFF3768	0.32	+1.2
3,805,254	-		GFF3768	0.32	+0.7
3,805,254	-		GFF3768	0.32	-0.7
3,805,254	-		GFF3768	0.32	-1.6
3,805,254	-		GFF3768	0.32	+0.3
3,805,254	-		GFF3768	0.32	+1.0
3,805,254	-		GFF3768	0.32	-0.8
3,805,254	-		GFF3768	0.32	+1.8
3,805,254	-		GFF3768	0.32	-0.7
3,805,259	-		GFF3768	0.33	+0.3
3,805,259	-		GFF3768	0.33	-0.2
3,805,259	-		GFF3768	0.33	-1.4
3,805,272	-		GFF3768	0.33	-1.0
3,805,272	-		GFF3768	0.33	-0.2
3,805,285	+		GFF3768	0.34	+0.1
3,805,285	+		GFF3768	0.34	-1.4
3,805,290	+		GFF3768	0.34	+0.7
3,805,290	+		GFF3768	0.34	+1.1
3,805,292	+		GFF3768	0.34	+0.3
3,805,292	+		GFF3768	0.34	+1.1
3,805,292	+		GFF3768	0.34	-1.2
3,805,292	+		GFF3768	0.34	-0.2
3,805,293	-		GFF3768	0.34	+0.2
3,805,298	-		GFF3768	0.35	-2.0
3,805,298	-		GFF3768	0.35	-0.4
3,805,298	-		GFF3768	0.35	-1.4
3,805,300	+		GFF3768	0.35	-1.6
3,805,300	-		GFF3768	0.35	-0.7
3,805,300	-		GFF3768	0.35	-2.3
3,805,300	-		GFF3768	0.35	-1.7
3,805,323	+		GFF3768	0.36	-0.2
3,805,325	-		GFF3768	0.36	-1.0
3,805,336	+		GFF3768	0.37	+0.4
3,805,336	+		GFF3768	0.37	-0.7
3,805,336	+		GFF3768	0.37	-0.4
3,805,336	+		GFF3768	0.37	-2.2
3,805,336	+		GFF3768	0.37	-0.2
3,805,344	-		GFF3768	0.37	-0.1
3,805,344	-		GFF3768	0.37	+0.0
3,805,344	-		GFF3768	0.37	+0.8
3,805,344	-		GFF3768	0.37	-0.8
3,805,365	+		GFF3768	0.38	-0.6
3,805,373	+		GFF3768	0.39	-0.3
3,805,379	+		GFF3768	0.39	+0.4
3,805,379	+		GFF3768	0.39	-1.9
3,805,402	+		GFF3768	0.40	+0.6
3,805,429	+		GFF3768	0.42	-0.8
3,805,429	+		GFF3768	0.42	+0.1
3,805,483	-		GFF3768	0.45	+1.1
3,805,557	-		GFF3768	0.49	-1.1
3,805,573	+		GFF3768	0.50	-0.8
3,805,578	+		GFF3768	0.50	+1.0
3,805,578	+		GFF3768	0.50	+0.2
3,805,578	+		GFF3768	0.50	+0.3
3,805,581	-		GFF3768	0.50	+0.3
3,805,583	+		GFF3768	0.50	+1.1
3,805,583	+		GFF3768	0.50	+0.2
3,805,583	+		GFF3768	0.50	-0.9
3,805,586	-		GFF3768	0.50	+1.3
3,805,586	-		GFF3768	0.50	+1.1
3,805,586	-		GFF3768	0.50	-0.1
3,805,586	-		GFF3768	0.50	+0.3
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3,805,586	-		GFF3768	0.50	-1.6
3,805,591	-		GFF3768	0.51	+0.1
3,805,626	+		GFF3768	0.52	+0.2
3,805,650	+		GFF3768	0.54	-1.3
3,805,650	+		GFF3768	0.54	+0.7
3,805,651	-		GFF3768	0.54	+0.2