Strain Fitness in Sphingobium sp. HT1-2 around GFF3712

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,755,669	+		GFF3710	0.88	+0.7
3,755,669	+		GFF3710	0.88	-2.0
3,755,677	-		GFF3710	0.89	+1.0
3,755,677	-		GFF3710	0.89	-0.4
3,755,677	-		GFF3710	0.89	-2.4
3,755,677	-		GFF3710	0.89	-0.3
3,755,713	-				-1.9
3,755,736	+				-0.9
3,755,749	-				-0.6
3,755,749	-				-0.9
3,755,751	-				+0.9
3,755,761	+				-0.4
3,755,762	+				-1.3
3,755,764	-				-0.6
3,755,770	-				+1.1
3,755,775	+				-0.4
3,755,776	+				-0.5
3,755,776	+				-0.3
3,755,776	-				+0.5
3,755,776	-				+1.0
3,755,778	-				-0.1
3,755,778	-				+0.4
3,755,778	-				+1.4
3,755,778	-				-0.2
3,755,778	-				+0.7
3,755,778	-				+1.2
3,755,778	-				-0.4
3,755,778	-				-0.3
3,755,783	-				+0.6
3,755,783	-				-0.1
3,755,783	-				-0.3
3,755,784	-				+0.0
3,755,789	-				+1.2
3,755,807	+				-0.9
3,755,807	+				+0.1
3,755,815	-				-0.7
3,755,827	-				-0.3
3,755,837	+				+0.6
3,755,838	+				-0.6
3,755,838	+				-0.3
3,755,846	-				+0.6
3,755,850	+				-0.3
3,755,855	+				-0.7
3,755,860	+				-1.2
3,755,863	-				+0.2
3,755,863	-				-0.4
3,755,865	+				-0.7
3,755,865	+				+1.0
3,755,880	+		GFF3711	0.11	+0.1
3,755,883	-		GFF3711	0.12	-2.3
3,755,897	+		GFF3711	0.13	-0.4
3,755,905	+		GFF3711	0.14	+0.3
3,755,912	-		GFF3711	0.15	-0.7
3,755,944	-		GFF3711	0.19	-0.8
3,755,952	+		GFF3711	0.20	-0.7
3,755,952	+		GFF3711	0.20	+0.8
3,755,990	+		GFF3711	0.24	+0.4
3,756,005	+		GFF3711	0.26	+0.5
3,756,018	+		GFF3711	0.28	+0.1
3,756,024	+		GFF3711	0.28	+1.6
3,756,027	+		GFF3711	0.29	-0.1
3,756,035	-		GFF3711	0.30	-0.9
3,756,035	-		GFF3711	0.30	-0.5
3,756,037	+		GFF3711	0.30	+0.1
3,756,037	+		GFF3711	0.30	-0.5
3,756,043	-		GFF3711	0.30	+0.6
3,756,045	+		GFF3711	0.31	-0.6
3,756,045	-		GFF3711	0.31	+0.1
3,756,045	-		GFF3711	0.31	+0.5
3,756,045	-		GFF3711	0.31	-0.4
3,756,045	-		GFF3711	0.31	+0.5
3,756,053	-		GFF3711	0.32	+1.4
3,756,060	+		GFF3711	0.33	-1.2
3,756,060	+		GFF3711	0.33	-1.1
3,756,068	-		GFF3711	0.33	+0.3
3,756,068	-		GFF3711	0.33	-0.5
3,756,072	+		GFF3711	0.34	+0.6
3,756,080	-		GFF3711	0.35	-1.2
3,756,099	+		GFF3711	0.37	-1.3
3,756,099	+		GFF3711	0.37	+0.6
3,756,103	-		GFF3711	0.38	+0.8
3,756,103	-		GFF3711	0.38	-0.8
3,756,107	-		GFF3711	0.38	+0.1
3,756,107	-		GFF3711	0.38	-0.1
3,756,109	+		GFF3711	0.38	-3.9
3,756,110	+		GFF3711	0.38	-0.0
3,756,110	+		GFF3711	0.38	-0.4
3,756,120	+		GFF3711	0.40	+0.7
3,756,120	+		GFF3711	0.40	-0.3
3,756,120	+		GFF3711	0.40	+0.8
3,756,120	+		GFF3711	0.40	-1.5
3,756,120	+		GFF3711	0.40	-0.4
3,756,120	+		GFF3711	0.40	-0.1
3,756,123	-		GFF3711	0.40	-1.3
3,756,128	+		GFF3711	0.41	-0.5
3,756,128	-		GFF3711	0.41	-1.8
3,756,128	-		GFF3711	0.41	+0.3
3,756,128	-		GFF3711	0.41	-0.2
3,756,128	-		GFF3711	0.41	+1.1
3,756,128	-		GFF3711	0.41	-1.6
3,756,130	+		GFF3711	0.41	+2.3
3,756,130	+		GFF3711	0.41	+0.1
3,756,130	+		GFF3711	0.41	+1.5
3,756,130	+		GFF3711	0.41	+0.4
3,756,130	+		GFF3711	0.41	-1.5
3,756,130	+		GFF3711	0.41	-0.5
3,756,130	+		GFF3711	0.41	-0.1
3,756,130	+		GFF3711	0.41	-0.3
3,756,130	+		GFF3711	0.41	-0.2
3,756,130	+		GFF3711	0.41	-0.4
3,756,130	+		GFF3711	0.41	-2.6
3,756,138	-		GFF3711	0.42	-0.5
3,756,138	-		GFF3711	0.42	-0.1
3,756,138	-		GFF3711	0.42	+1.0
3,756,138	-		GFF3711	0.42	+0.0
3,756,138	-		GFF3711	0.42	+0.7
3,756,138	-		GFF3711	0.42	-0.2
3,756,138	-		GFF3711	0.42	+0.2
3,756,138	-		GFF3711	0.42	+0.3
3,756,138	-		GFF3711	0.42	-0.8
3,756,138	-		GFF3711	0.42	+0.7
3,756,138	-		GFF3711	0.42	+0.3
3,756,138	-		GFF3711	0.42	-0.1
3,756,138	-		GFF3711	0.42	-1.5
3,756,157	+		GFF3711	0.44	-0.6
3,756,164	-		GFF3711	0.45	-1.2
3,756,174	-		GFF3711	0.46	+0.4
3,756,189	+		GFF3711	0.48	-1.9
3,756,193	+		GFF3711	0.48	-1.6
3,756,211	+		GFF3711	0.50	+0.1
3,756,228	+		GFF3711	0.52	-0.5
3,756,229	-		GFF3711	0.52	+1.3
3,756,238	+		GFF3711	0.54	-0.3
3,756,246	-		GFF3711	0.54	+2.0
3,756,248	+		GFF3711	0.55	-1.4
3,756,277	+		GFF3711	0.58	-2.3
3,756,278	-		GFF3711	0.58	+1.4
3,756,280	+		GFF3711	0.59	-0.3
3,756,317	-		GFF3711	0.63	-0.3
3,756,324	+		GFF3711	0.64	+0.6
3,756,325	+		GFF3711	0.64	+0.8
3,756,325	+		GFF3711	0.64	-1.4
3,756,325	+		GFF3711	0.64	+0.8
3,756,325	-		GFF3711	0.64	+0.8
3,756,332	-		GFF3711	0.65	-1.2
3,756,332	-		GFF3711	0.65	+0.5
3,756,351	+		GFF3711	0.67	-0.7
3,756,351	-		GFF3711	0.67	-0.9
3,756,351	-		GFF3711	0.67	-0.6
3,756,351	-		GFF3711	0.67	-0.4
3,756,359	+		GFF3711	0.68	-0.2
3,756,361	+		GFF3711	0.68	+1.2
3,756,369	-		GFF3711	0.69	-1.2
3,756,369	-		GFF3711	0.69	+0.3
3,756,375	-		GFF3711	0.70	+0.4
3,756,388	+		GFF3711	0.71	+0.1
3,756,406	+		GFF3711	0.73	-0.3
3,756,407	+		GFF3711	0.74	-1.2
3,756,413	+		GFF3711	0.74	+0.5
3,756,414	-		GFF3711	0.74	-0.3
3,756,421	-		GFF3711	0.75	+1.6
3,756,423	+		GFF3711	0.75	-2.6
3,756,423	+		GFF3711	0.75	-3.1
3,756,423	+		GFF3711	0.75	-1.4
3,756,425	-		GFF3711	0.76	-1.1
3,756,431	-		GFF3711	0.76	+1.3
3,756,432	+		GFF3711	0.76	-2.2
3,756,432	+		GFF3711	0.76	-2.1
3,756,437	+		GFF3711	0.77	-0.9
3,756,437	+		GFF3711	0.77	+1.0
3,756,437	+		GFF3711	0.77	-1.7
3,756,437	+		GFF3711	0.77	-0.1
3,756,437	+		GFF3711	0.77	+1.6
3,756,440	-		GFF3711	0.77	-1.2
3,756,443	-		GFF3711	0.78	-1.3
3,756,450	-		GFF3711	0.79	+0.5
3,756,450	-		GFF3711	0.79	+0.1
3,756,452	+		GFF3711	0.79	-0.5
3,756,460	-		GFF3711	0.80	-1.2
3,756,474	+		GFF3711	0.81	-1.6
3,756,474	+		GFF3711	0.81	-2.0
3,756,481	+		GFF3711	0.82	+0.2
3,756,482	+		GFF3711	0.82	+0.6
3,756,482	+		GFF3711	0.82	-0.2
3,756,482	-		GFF3711	0.82	-2.1
3,756,495	-		GFF3711	0.84	+0.8
3,756,500	+		GFF3711	0.85	+0.3
3,756,500	-		GFF3711	0.85	+1.1
3,756,521	+		GFF3711	0.87	+0.1
3,756,521	+		GFF3711	0.87	-0.1
3,756,529	-		GFF3711	0.88	+0.4
3,756,531	+		GFF3711	0.88	-0.7
3,756,531	+		GFF3711	0.88	+0.4
3,756,531	+		GFF3711	0.88	-0.2
3,756,573	-				+0.3
3,756,573	-				+1.2
3,756,573	-				-0.1
3,756,583	-				-1.4
3,756,589	-				-1.3
3,756,601	-				+0.2
3,756,612	+				+0.6
3,756,618	+				+0.3
3,756,626	-				-0.6
3,756,631	+				+0.8
3,756,632	+				-1.3
3,756,633	-				+0.2
3,756,640	-				-0.9
3,756,640	-				+0.3
3,756,657	+				-1.3
3,756,658	+				-1.5
3,756,663	+				+0.4
3,756,671	-				+0.6
3,756,671	-				-0.6
3,756,691	+				-0.6
3,756,698	+				+0.6
3,756,699	-				+1.1
3,756,704	-				-0.1
3,756,709	-				+0.9
3,756,718	+				+1.0
3,756,718	+				-0.2
3,756,718	+				-0.0
3,756,726	+				-0.2
3,756,726	-				-1.3
3,756,726	-				+0.5
3,756,726	-				+1.2
3,756,726	-				+0.2
3,756,726	-				-1.4
3,756,734	+		GFF3712	0.10	+0.8
3,756,770	+		GFF3712	0.16	-0.2
3,756,770	+		GFF3712	0.16	-0.1
3,756,778	-		GFF3712	0.17	+0.1
3,756,781	+		GFF3712	0.18	-1.3
3,756,786	+		GFF3712	0.18	-0.7
3,756,789	-		GFF3712	0.19	+0.3
3,756,795	+		GFF3712	0.20	+1.5
3,756,795	+		GFF3712	0.20	-0.7
3,756,801	+		GFF3712	0.21	-0.7
3,756,801	+		GFF3712	0.21	+1.2
3,756,801	+		GFF3712	0.21	-0.3
3,756,803	-		GFF3712	0.21	-0.2
3,756,809	-		GFF3712	0.22	-2.2
3,756,809	-		GFF3712	0.22	-0.8
3,756,831	+		GFF3712	0.25	-1.7
3,756,853	+		GFF3712	0.28	-0.6
3,756,855	+		GFF3712	0.29	+0.0
3,756,855	+		GFF3712	0.29	+0.3
3,756,863	-		GFF3712	0.30	+0.4
3,756,911	-		GFF3712	0.37	+0.2
3,756,912	+		GFF3712	0.37	-0.2
3,756,913	-		GFF3712	0.38	+1.2
3,756,924	+		GFF3712	0.39	-1.4
3,756,924	+		GFF3712	0.39	-0.1
3,756,934	+		GFF3712	0.41	+0.7
3,756,934	+		GFF3712	0.41	+0.3
3,756,934	+		GFF3712	0.41	-0.8
3,756,934	+		GFF3712	0.41	-0.7
3,756,934	+		GFF3712	0.41	+0.4
3,756,942	-		GFF3712	0.42	+0.4
3,756,967	+		GFF3712	0.46	-0.8
3,756,967	+		GFF3712	0.46	+0.3
3,756,975	-		GFF3712	0.47	+0.2
3,756,975	-		GFF3712	0.47	-0.7
3,756,975	-		GFF3712	0.47	-1.1
3,756,975	-		GFF3712	0.47	-1.0
3,756,976	+		GFF3712	0.47	-0.3
3,756,981	+		GFF3712	0.48	-1.0
3,757,006	+		GFF3712	0.52	+0.9
3,757,011	+		GFF3712	0.52	-0.5
3,757,011	+		GFF3712	0.52	-1.0
3,757,016	+		GFF3712	0.53	-0.9
3,757,017	+		GFF3712	0.53	+0.1
3,757,019	-		GFF3712	0.54	+0.6
3,757,024	-		GFF3712	0.54	-1.3
3,757,036	+		GFF3712	0.56	+0.4
3,757,068	+		GFF3712	0.61	-1.1
3,757,078	+		GFF3712	0.63	+1.5
3,757,078	+		GFF3712	0.63	-1.9
3,757,078	+		GFF3712	0.63	+0.9
3,757,080	+		GFF3712	0.63	-0.2
3,757,081	-		GFF3712	0.63	+1.3
3,757,086	-		GFF3712	0.64	-0.7
3,757,086	-		GFF3712	0.64	+0.3
3,757,086	-		GFF3712	0.64	+1.3
3,757,086	-		GFF3712	0.64	+0.5
3,757,086	-		GFF3712	0.64	+0.1
3,757,086	-		GFF3712	0.64	+0.6
3,757,086	-		GFF3712	0.64	-0.2
3,757,127	+		GFF3712	0.70	-2.6
3,757,132	+		GFF3712	0.71	-1.2
3,757,140	+		GFF3712	0.72	-1.0
3,757,142	-		GFF3712	0.72	+0.0
3,757,148	+		GFF3712	0.73	+0.7
3,757,156	-		GFF3712	0.74	+0.1
3,757,174	-		GFF3712	0.77	-1.2
3,757,177	+		GFF3712	0.78	+0.6
3,757,185	-		GFF3712	0.79	-1.3
3,757,186	+		GFF3712	0.79	-2.2
3,757,202	-		GFF3712	0.81	-1.2
3,757,224	-		GFF3712	0.85	-0.7
3,757,229	+		GFF3712	0.85	-0.0
3,757,242	-		GFF3712	0.87	-1.2
3,757,250	+		GFF3712	0.89	-2.0
3,757,258	-		GFF3712	0.90	+1.4
3,757,281	+				+1.4
3,757,288	+				+0.0
3,757,289	-				-0.3
3,757,296	-				+0.4
3,757,298	+				-1.1
3,757,306	+				+0.3
3,757,314	-				+0.5
3,757,325	+				-0.3
3,757,332	+				+0.8
3,757,332	+				-2.5
3,757,332	+				-0.4
3,757,340	-				-0.6
3,757,340	-				-1.4
3,757,347	-				+0.8
3,757,347	-				+0.3
3,757,366	+		GFF3713	0.11	+0.7
3,757,372	-		GFF3713	0.12	+1.6
3,757,372	-		GFF3713	0.12	+0.6
3,757,372	-		GFF3713	0.12	-1.6
3,757,374	-		GFF3713	0.13	-0.2
3,757,374	-		GFF3713	0.13	+1.1
3,757,374	-		GFF3713	0.13	-0.0
3,757,374	-		GFF3713	0.13	-0.6
3,757,403	+		GFF3713	0.20	+1.6
3,757,403	+		GFF3713	0.20	+0.3
3,757,411	-		GFF3713	0.22	-1.0
3,757,411	-		GFF3713	0.22	+0.3
3,757,432	+		GFF3713	0.27	-0.6
3,757,432	+		GFF3713	0.27	-0.1
3,757,440	-		GFF3713	0.29	-1.2
3,757,490	-		GFF3713	0.41	-1.9
3,757,509	-		GFF3713	0.46	-1.5
3,757,509	-		GFF3713	0.46	+0.4
3,757,514	-		GFF3713	0.47	+0.1
3,757,514	-		GFF3713	0.47	-1.8
3,757,519	+		GFF3713	0.48	-0.1
3,757,520	-		GFF3713	0.48	-0.6
3,757,534	-		GFF3713	0.52	-1.8
3,757,543	-		GFF3713	0.54	-2.1
3,757,551	+		GFF3713	0.56	+0.0
3,757,559	-		GFF3713	0.58	-0.1
3,757,559	-		GFF3713	0.58	+1.6
3,757,559	-		GFF3713	0.58	-1.7
3,757,559	-		GFF3713	0.58	+0.7
3,757,559	-		GFF3713	0.58	+0.7
3,757,561	+		GFF3713	0.58	-0.7
3,757,561	+		GFF3713	0.58	+1.1
3,757,561	+		GFF3713	0.58	+1.1
3,757,561	+		GFF3713	0.58	+0.4
3,757,561	+		GFF3713	0.58	-0.1
3,757,561	+		GFF3713	0.58	-0.7
3,757,569	-		GFF3713	0.60	+0.8
3,757,569	-		GFF3713	0.60	-1.6
3,757,569	-		GFF3713	0.60	+0.7
3,757,605	-		GFF3713	0.69	+1.1
3,757,608	-		GFF3713	0.70	-2.3
3,757,613	+		GFF3713	0.71	-0.2
3,757,615	+		GFF3713	0.72	-0.8
3,757,623	-		GFF3713	0.73	-0.2
3,757,623	-		GFF3713	0.73	+0.0
3,757,623	-		GFF3713	0.73	+0.8
3,757,647	+		GFF3713	0.79	-0.4
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