Strain Fitness in Sphingobium sp. HT1-2 around GFF3700

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,743,360	-		GFF3698	0.82	-0.8
3,743,364	+		GFF3698	0.83	+1.1
3,743,364	+		GFF3698	0.83	-1.3
3,743,364	+		GFF3698	0.83	-1.0
3,743,364	+		GFF3698	0.83	+1.3
3,743,364	+		GFF3698	0.83	-0.1
3,743,371	+		GFF3698	0.84	-0.5
3,743,372	-		GFF3698	0.84	+0.0
3,743,372	-		GFF3698	0.84	-0.3
3,743,372	-		GFF3698	0.84	-1.6
3,743,405	-		GFF3698	0.89	-2.9
3,743,411	-				+0.2
3,743,432	+				-0.7
3,743,439	-				-1.2
3,743,482	+				-1.2
3,743,543	+				+0.2
3,743,557	+				-0.9
3,743,557	+				+0.1
3,743,566	-				+0.4
3,743,581	-				+0.3
3,743,582	+				-0.7
3,743,583	+				-1.4
3,743,590	-				-1.5
3,743,590	-				-2.4
3,743,590	-				+0.2
3,743,590	-				+1.4
3,743,590	-				-2.4
3,743,612	+				-1.0
3,743,616	+				-1.1
3,743,620	+				-0.1
3,743,620	-				-0.3
3,743,685	-				-0.2
3,743,708	-		GFF3699	0.12	-0.1
3,743,735	-		GFF3699	0.16	+0.6
3,743,767	-		GFF3699	0.21	-0.9
3,743,775	+		GFF3699	0.22	+0.2
3,743,777	-		GFF3699	0.22	+1.3
3,743,800	+		GFF3699	0.25	+1.4
3,743,805	+		GFF3699	0.26	+0.2
3,743,813	-		GFF3699	0.27	-1.0
3,743,841	+		GFF3699	0.31	+0.6
3,743,860	-		GFF3699	0.34	+1.0
3,743,876	-		GFF3699	0.36	+0.0
3,743,876	-		GFF3699	0.36	-2.1
3,743,876	-		GFF3699	0.36	+0.4
3,743,877	+		GFF3699	0.36	-0.1
3,743,903	-		GFF3699	0.40	-0.6
3,743,931	-		GFF3699	0.43	+0.9
3,743,931	-		GFF3699	0.43	+1.0
3,743,931	-		GFF3699	0.43	+0.5
3,743,939	-		GFF3699	0.45	+0.2
3,743,967	-		GFF3699	0.48	-1.9
3,743,972	-		GFF3699	0.49	-0.8
3,744,023	+		GFF3699	0.56	-0.1
3,744,023	+		GFF3699	0.56	-2.3
3,744,023	+		GFF3699	0.56	-1.6
3,744,023	+		GFF3699	0.56	+0.3
3,744,023	+		GFF3699	0.56	+0.4
3,744,023	+		GFF3699	0.56	-0.5
3,744,031	-		GFF3699	0.57	+0.0
3,744,031	-		GFF3699	0.57	-1.1
3,744,031	-		GFF3699	0.57	+1.9
3,744,031	-		GFF3699	0.57	-0.1
3,744,031	-		GFF3699	0.57	+0.4
3,744,046	+		GFF3699	0.59	+0.1
3,744,078	-		GFF3699	0.64	-1.3
3,744,122	+		GFF3699	0.70	+1.1
3,744,122	+		GFF3699	0.70	-1.3
3,744,124	-		GFF3699	0.70	-1.3
3,744,154	+		GFF3699	0.74	-0.4
3,744,160	-		GFF3699	0.75	-0.0
3,744,172	+		GFF3699	0.77	+0.3
3,744,172	+		GFF3699	0.77	-1.6
3,744,177	+		GFF3699	0.78	+0.0
3,744,177	+		GFF3699	0.78	-2.6
3,744,177	+		GFF3699	0.78	-0.1
3,744,177	+		GFF3699	0.78	-0.1
3,744,178	-		GFF3699	0.78	+0.0
3,744,182	+		GFF3699	0.78	-0.9
3,744,182	+		GFF3699	0.78	+0.1
3,744,182	+		GFF3699	0.78	+0.0
3,744,182	+		GFF3699	0.78	+0.6
3,744,185	-		GFF3699	0.79	+0.4
3,744,185	-		GFF3699	0.79	-0.1
3,744,188	-		GFF3699	0.79	-2.7
3,744,190	-		GFF3699	0.79	-1.4
3,744,204	+		GFF3699	0.81	-0.3
3,744,211	-		GFF3699	0.82	+0.5
3,744,239	-		GFF3699	0.86	-0.3
3,744,276	-				-0.4
3,744,280	+				+0.5
3,744,280	+				+0.6
3,744,280	+				-0.1
3,744,280	+				+0.3
3,744,280	+				-0.2
3,744,280	+				-2.6
3,744,280	+				-0.2
3,744,280	+				+0.7
3,744,280	+				+0.6
3,744,280	+				+1.0
3,744,280	+				+0.2
3,744,280	+				+0.4
3,744,280	+				-0.5
3,744,280	+				-1.4
3,744,280	+				-2.0
3,744,280	+				+1.1
3,744,280	+				+0.5
3,744,280	+				-0.1
3,744,280	+				+0.9
3,744,280	+				+0.5
3,744,280	+				+0.1
3,744,280	+				-0.7
3,744,280	+				-0.2
3,744,280	+				-0.2
3,744,280	+				-2.4
3,744,280	+				+0.7
3,744,285	+				+0.2
3,744,288	-				-1.8
3,744,288	-				+1.1
3,744,288	-				-2.4
3,744,288	-				-0.8
3,744,288	-				-2.1
3,744,288	-				-0.9
3,744,288	-				-0.3
3,744,288	-				-0.2
3,744,288	-				-0.7
3,744,288	-				+0.8
3,744,288	-				-3.4
3,744,288	-				+0.3
3,744,288	-				-0.1
3,744,288	-				-2.1
3,744,288	-				+0.6
3,744,289	+				-0.5
3,744,301	+				-1.0
3,744,303	+				-0.4
3,744,303	+				+0.0
3,744,311	-				-0.3
3,744,311	-				+0.0
3,744,311	-				-0.7
3,744,311	-				-1.9
3,744,315	+				-0.9
3,744,322	+				-1.6
3,744,322	+				-1.5
3,744,325	-				-1.3
3,744,330	-				-1.3
3,744,332	+				-1.3
3,744,340	-				+0.0
3,744,340	-				-0.8
3,744,375	+				-0.8
3,744,392	+				-1.9
3,744,402	+				-0.2
3,744,410	-				+0.0
3,744,410	-				-0.1
3,744,410	-				-0.2
3,744,436	-				-0.2
3,744,455	-				+0.6
3,744,465	-				-1.3
3,744,476	+		GFF3700	0.10	+0.4
3,744,495	+		GFF3700	0.12	-2.8
3,744,505	+		GFF3700	0.12	+1.3
3,744,505	+		GFF3700	0.12	-1.1
3,744,505	+		GFF3700	0.12	+0.6
3,744,505	+		GFF3700	0.12	+0.7
3,744,513	-		GFF3700	0.13	-1.6
3,744,559	+		GFF3700	0.16	+1.1
3,744,559	+		GFF3700	0.16	-0.7
3,744,596	+		GFF3700	0.19	+0.2
3,744,623	-		GFF3700	0.21	-0.0
3,744,623	-		GFF3700	0.21	+0.4
3,744,673	-		GFF3700	0.25	-0.3
3,744,710	+		GFF3700	0.27	-0.5
3,744,712	+		GFF3700	0.28	+0.4
3,744,722	+		GFF3700	0.28	+1.6
3,744,727	+		GFF3700	0.29	-0.9
3,744,730	-		GFF3700	0.29	+0.3
3,744,730	-		GFF3700	0.29	-1.3
3,744,730	-		GFF3700	0.29	-0.5
3,744,738	-		GFF3700	0.29	-0.0
3,744,775	-		GFF3700	0.32	-1.2
3,744,780	-		GFF3700	0.32	-2.6
3,744,800	+		GFF3700	0.34	-0.1
3,744,808	-		GFF3700	0.34	-1.3
3,744,808	-		GFF3700	0.34	+0.1
3,744,808	-		GFF3700	0.34	+1.0
3,744,808	-		GFF3700	0.34	-1.5
3,744,808	-		GFF3700	0.34	+0.7
3,744,831	+		GFF3700	0.36	-0.9
3,744,884	+		GFF3700	0.40	-0.1
3,744,898	-		GFF3700	0.41	+1.0
3,744,905	+		GFF3700	0.42	-0.1
3,744,905	+		GFF3700	0.42	-1.6
3,744,913	-		GFF3700	0.42	-1.2
3,744,918	+		GFF3700	0.43	-0.6
3,744,918	+		GFF3700	0.43	-0.3
3,744,918	+		GFF3700	0.43	+0.3
3,744,918	+		GFF3700	0.43	-2.4
3,744,918	+		GFF3700	0.43	+1.9
3,744,918	+		GFF3700	0.43	-0.6
3,744,918	+		GFF3700	0.43	+0.1
3,744,918	+		GFF3700	0.43	+0.3
3,744,918	+		GFF3700	0.43	-1.3
3,744,921	-		GFF3700	0.43	+0.0
3,744,926	-		GFF3700	0.43	+1.2
3,744,926	-		GFF3700	0.43	+0.6
3,744,926	-		GFF3700	0.43	-0.7
3,744,926	-		GFF3700	0.43	+0.2
3,744,928	+		GFF3700	0.43	-0.2
3,744,928	+		GFF3700	0.43	+0.4
3,744,947	+		GFF3700	0.45	+0.4
3,744,947	+		GFF3700	0.45	-1.7
3,744,960	+		GFF3700	0.46	+0.1
3,744,987	+		GFF3700	0.48	-0.7
3,745,028	-		GFF3700	0.51	+0.0
3,745,028	-		GFF3700	0.51	+0.4
3,745,076	+		GFF3700	0.54	+0.3
3,745,079	-		GFF3700	0.54	-0.4
3,745,079	-		GFF3700	0.54	-1.4
3,745,086	+		GFF3700	0.55	-1.1
3,745,107	+		GFF3700	0.56	+0.4
3,745,118	+		GFF3700	0.57	+0.9
3,745,118	+		GFF3700	0.57	+1.1
3,745,123	+		GFF3700	0.57	+0.2
3,745,125	+		GFF3700	0.58	-0.7
3,745,125	-		GFF3700	0.58	-1.4
3,745,125	-		GFF3700	0.58	-0.3
3,745,126	-		GFF3700	0.58	-1.9
3,745,126	-		GFF3700	0.58	-0.9
3,745,126	-		GFF3700	0.58	-0.9
3,745,126	-		GFF3700	0.58	+0.6
3,745,126	-		GFF3700	0.58	+0.1
3,745,142	+		GFF3700	0.59	+0.8
3,745,152	-		GFF3700	0.60	-0.3
3,745,179	+		GFF3700	0.61	-2.0
3,745,239	+		GFF3700	0.66	+0.3
3,745,247	-		GFF3700	0.66	+1.2
3,745,247	-		GFF3700	0.66	-1.2
3,745,258	+		GFF3700	0.67	-2.6
3,745,263	+		GFF3700	0.68	+1.2
3,745,266	+		GFF3700	0.68	-0.2
3,745,276	+		GFF3700	0.69	-1.0
3,745,283	+		GFF3700	0.69	-1.2
3,745,284	-		GFF3700	0.69	-0.2
3,745,284	-		GFF3700	0.69	-0.5
3,745,291	-		GFF3700	0.70	+0.3
3,745,291	-		GFF3700	0.70	+0.1
3,745,296	-		GFF3700	0.70	+0.8
3,745,312	+		GFF3700	0.71	-2.0
3,745,320	-		GFF3700	0.72	-0.2
3,745,320	-		GFF3700	0.72	-0.6
3,745,347	+		GFF3700	0.74	+0.6
3,745,375	+		GFF3700	0.76	-1.7
3,745,375	+		GFF3700	0.76	+0.0
3,745,375	+		GFF3700	0.76	-0.4
3,745,375	+		GFF3700	0.76	-0.5
3,745,375	+		GFF3700	0.76	+0.1
3,745,375	+		GFF3700	0.76	+0.3
3,745,380	+		GFF3700	0.76	+0.7
3,745,383	-		GFF3700	0.76	-0.1
3,745,383	-		GFF3700	0.76	-1.0
3,745,385	+		GFF3700	0.76	-0.9
3,745,393	-		GFF3700	0.77	+0.1
3,745,395	+		GFF3700	0.77	+0.8
3,745,398	-		GFF3700	0.77	-0.4
3,745,410	+		GFF3700	0.78	-1.4
3,745,410	+		GFF3700	0.78	+1.7
3,745,434	+		GFF3700	0.80	+0.3
3,745,434	+		GFF3700	0.80	-0.5
3,745,434	+		GFF3700	0.80	+1.7
3,745,434	+		GFF3700	0.80	-1.3
3,745,434	+		GFF3700	0.80	-1.1
3,745,434	+		GFF3700	0.80	-1.0
3,745,442	-		GFF3700	0.81	-0.6
3,745,442	-		GFF3700	0.81	-0.8
3,745,442	-		GFF3700	0.81	-1.1
3,745,442	-		GFF3700	0.81	+0.1
3,745,442	-		GFF3700	0.81	+0.9
3,745,442	-		GFF3700	0.81	-0.3
3,745,442	-		GFF3700	0.81	-0.4
3,745,450	+		GFF3700	0.81	-0.9
3,745,458	-		GFF3700	0.82	-1.6
3,745,470	-		GFF3700	0.83	-1.0
3,745,476	-		GFF3700	0.83	-0.9
3,745,514	+		GFF3700	0.86	-1.2
3,745,524	+		GFF3700	0.87	+0.3
3,745,524	+		GFF3700	0.87	-0.3
3,745,533	+		GFF3700	0.87	-1.5
3,745,543	+		GFF3700	0.88	-0.1
3,745,558	-		GFF3700	0.89	-0.4
3,745,560	+		GFF3700	0.89	-0.1
3,745,560	+		GFF3700	0.89	-0.2
3,745,560	+		GFF3700	0.89	-1.6
3,745,568	-		GFF3700	0.90	-1.3
3,745,568	-		GFF3700	0.90	+0.8
3,745,568	-		GFF3700	0.90	+0.4
3,745,597	+				+0.5
3,745,597	+				-1.4
3,745,597	+				+0.2
3,745,597	+				-0.2
3,745,597	+				+0.3
3,745,597	+				-0.4
3,745,597	+				+0.2
3,745,597	+				-1.3
3,745,597	+				+0.1
3,745,597	+				+0.9
3,745,597	+				-0.4
3,745,597	+				-1.2
3,745,597	+				+0.6
3,745,597	+				-0.7
3,745,597	+				+0.1
3,745,597	+				-1.1
3,745,597	+				-1.0
3,745,597	+				-0.7
3,745,604	+				+0.5
3,745,604	+				-0.5
3,745,604	+				+0.3
3,745,604	+				-0.1
3,745,604	+				-0.5
3,745,604	+				-1.4
3,745,604	+				-0.4
3,745,604	+				+0.6
3,745,604	+				+0.3
3,745,604	+				+0.6
3,745,605	-				+0.1
3,745,605	-				-1.0
3,745,605	-				+1.4
3,745,605	-				-0.3
3,745,605	-				-0.7
3,745,605	-				-0.3
3,745,605	-				-0.5
3,745,605	-				-0.1
3,745,605	-				+0.5
3,745,605	-				+0.4
3,745,605	-				-1.4
3,745,605	-				-0.3
3,745,605	-				-1.3
3,745,605	-				-0.3
3,745,605	-				-2.6
3,745,605	-				-0.1
3,745,609	+				+0.7
3,745,609	+				-0.0
3,745,612	-				+0.6
3,745,612	-				-0.7
3,745,612	-				+0.4
3,745,614	+				+1.0
3,745,614	+				+0.7
3,745,617	-				-0.5
3,745,617	-				-0.2
3,745,617	-				-2.3
3,745,622	-				+0.1
3,745,641	-				-0.1
3,745,678	+				-2.1
3,745,678	+				+0.1
3,745,678	+				+0.3
3,745,678	+				-0.0
3,745,686	-				-0.8
3,745,688	+				+0.2
3,745,688	+				+0.1
3,745,688	+				-0.1
3,745,688	+				-2.5
3,745,692	+				+0.6
3,745,696	-				-0.8
3,745,696	-				+0.7
3,745,696	-				-0.5
3,745,718	+				-0.5
3,745,728	+				-0.6
3,745,728	+				+0.7
3,745,728	+				+1.9
3,745,741	-				-0.5
3,745,741	-				+0.9
3,745,741	-				+1.2
3,745,751	-				+0.9
3,745,755	+				-0.1
3,745,765	-				-2.1
3,745,768	-				+0.7
3,745,784	+				+0.6
3,745,797	-				-0.6
3,745,802	-				+0.4
3,745,802	-				-2.0
3,745,802	-				+0.0
3,745,802	-				-0.9
3,745,804	+				+1.6
3,745,804	+				-0.3
3,745,805	+				+0.4
3,745,812	+				-0.7
3,745,812	+				-0.0
3,745,812	+				+0.1
3,745,812	-				+1.0
3,745,813	-				+0.7
3,745,820	-				-1.4
3,745,820	-				+0.8
3,745,820	-				+0.5
3,745,820	-				-0.6
3,745,820	-				+0.4
3,745,822	-				-2.4
3,745,842	-				-2.2
3,745,843	-				+0.2
3,745,843	-				+0.8
3,745,867	+				-1.2
3,745,867	+				+0.6
3,745,908	-				+1.2
3,745,943	+				-0.0
3,745,943	+				+0.8
3,745,951	-				-1.2
3,745,951	-				-0.8
3,745,970	+				-0.3
3,745,970	+				-1.4
3,745,978	-				-1.2
3,745,978	-				-0.1
3,745,995	-				-0.6
3,746,044	+		GFF3701	0.11	+1.1
3,746,052	-		GFF3701	0.12	+0.2
3,746,052	-		GFF3701	0.12	-1.4
3,746,079	+		GFF3701	0.14	-2.3
3,746,079	+		GFF3701	0.14	+0.5
3,746,087	-		GFF3701	0.14	+0.3
3,746,087	-		GFF3701	0.14	-1.1
3,746,087	-		GFF3701	0.14	+1.0
3,746,087	-		GFF3701	0.14	-0.2
3,746,125	+		GFF3701	0.16	-1.4
3,746,125	+		GFF3701	0.16	-1.9
3,746,138	-		GFF3701	0.17	-1.5
3,746,154	-		GFF3701	0.18	+0.0
3,746,154	-		GFF3701	0.18	-1.0
3,746,164	+		GFF3701	0.19	+1.3
3,746,185	-		GFF3701	0.20	-1.6
3,746,207	+		GFF3701	0.22	+0.7
3,746,215	-		GFF3701	0.22	+0.8
3,746,217	-		GFF3701	0.22	-0.2
3,746,222	+		GFF3701	0.23	-0.1
3,746,222	+		GFF3701	0.23	-1.4
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3,746,230	-		GFF3701	0.23	-1.2
3,746,230	-		GFF3701	0.23	-1.3
3,746,230	-		GFF3701	0.23	-1.5
3,746,241	+		GFF3701	0.24	-1.4
3,746,241	+		GFF3701	0.24	-0.3
3,746,241	+		GFF3701	0.24	+0.2
3,746,241	+		GFF3701	0.24	-0.5
3,746,242	+		GFF3701	0.24	+0.2
3,746,243	+		GFF3701	0.24	+0.4
3,746,249	-		GFF3701	0.24	+0.7
3,746,249	-		GFF3701	0.24	-0.4
3,746,249	-		GFF3701	0.24	-0.5
3,746,249	-		GFF3701	0.24	+0.5
3,746,258	-		GFF3701	0.25	-0.1
3,746,258	-		GFF3701	0.25	-0.4
3,746,263	-		GFF3701	0.25	+1.3
3,746,264	+		GFF3701	0.25	-0.1
3,746,264	+		GFF3701	0.25	-0.7
3,746,264	+		GFF3701	0.25	+0.4
3,746,272	-		GFF3701	0.26	+0.5
3,746,272	-		GFF3701	0.26	+0.1
3,746,272	-		GFF3701	0.26	+0.3
3,746,274	+		GFF3701	0.26	-0.8
3,746,281	+		GFF3701	0.27	-2.5
3,746,282	-		GFF3701	0.27	-0.5
3,746,287	-		GFF3701	0.27	-1.7
3,746,287	-		GFF3701	0.27	-1.6
3,746,342	-		GFF3701	0.30	-0.6
3,746,367	-		GFF3701	0.32	-0.7
3,746,408	+		GFF3701	0.35	-1.2
3,746,411	-		GFF3701	0.35	-0.3
3,746,422	+		GFF3701	0.36	-1.5
3,746,429	+		GFF3701	0.36	+0.2
3,746,429	+		GFF3701	0.36	-2.5
3,746,430	-		GFF3701	0.36	-0.6
3,746,437	-		GFF3701	0.37	-2.3
3,746,452	-		GFF3701	0.38	+0.2
3,746,464	+		GFF3701	0.38	-1.4
3,746,467	-		GFF3701	0.39	-1.5
3,746,489	+		GFF3701	0.40	+1.6
3,746,489	+		GFF3701	0.40	+0.4
3,746,497	-		GFF3701	0.41	-0.0
3,746,497	-		GFF3701	0.41	+0.3
3,746,501	-		GFF3701	0.41	+1.1
3,746,502	-		GFF3701	0.41	-2.4
3,746,532	+		GFF3701	0.43	+0.8
3,746,535	-		GFF3701	0.43	+1.2
3,746,557	+		GFF3701	0.44	-1.4
3,746,578	+		GFF3701	0.46	-1.2
3,746,586	-		GFF3701	0.46	-0.2
3,746,586	-		GFF3701	0.46	-0.8
3,746,586	-		GFF3701	0.46	+0.4
3,746,594	-		GFF3701	0.47	-0.8
3,746,605	+		GFF3701	0.47	+0.6
3,746,613	-		GFF3701	0.48	-2.0
3,746,652	+		GFF3701	0.51	-0.6
3,746,660	-		GFF3701	0.51	+0.3
3,746,660	-		GFF3701	0.51	-0.6
3,746,671	-		GFF3701	0.52	-1.2