Strain Fitness in Sphingobium sp. HT1-2 around GFF3675

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3673 and GFF3674 overlap by 1 nucleotidesGFF3674 and GFF3675 are separated by 21 nucleotidesGFF3675 and GFF3676 are separated by 234 nucleotides GFF3673 - Lipopolysaccharide export system protein LptA, at 3,716,198 to 3,716,755 GFF3673 GFF3674 - Lipopolysaccharide export system protein LptC, at 3,716,755 to 3,717,402 GFF3674 GFF3675 - Ribonuclease D related protein, at 3,717,424 to 3,718,041 GFF3675 GFF3676 - Cold shock protein of CSP family => dimer, at 3,718,276 to 3,719,106 GFF3676 Position (kb) 3717 3718 3719Strain fitness (log2 ratio) -1 0 1 2at 3716.796 kb on - strandat 3717.356 kb on + strandat 3717.389 kb on + strandat 3717.417 kb on - strandat 3717.430 kb on - strandat 3717.443 kb on - strandat 3718.125 kb on + strandat 3718.125 kb on + strandat 3718.133 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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3,716,796 - -0.2
3,717,356 + +1.8
3,717,389 + -1.7
3,717,417 - -0.4
3,717,430 - -1.4
3,717,443 - +0.4
3,718,125 + -0.3
3,718,125 + -1.0
3,718,133 - -0.7

Or see this region's nucleotide sequence