Strain Fitness in Sphingobium sp. HT1-2 around GFF3671

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,713,164	+		GFF3669	0.86	-0.2
3,713,271	+				-1.2
3,713,279	-				+0.4
3,713,286	+				-0.7
3,713,295	-				+0.2
3,713,295	-				-1.7
3,713,299	-				-2.5
3,713,332	+				-0.6
3,713,381	+				-0.4
3,713,391	-		GFF3670	0.10	+1.3
3,713,430	+		GFF3670	0.15	+0.7
3,713,575	-		GFF3670	0.33	-1.6
3,713,580	-		GFF3670	0.34	-0.6
3,713,580	-		GFF3670	0.34	+0.3
3,713,580	-		GFF3670	0.34	-1.8
3,713,678	-		GFF3670	0.46	-0.2
3,713,685	+		GFF3670	0.47	-1.3
3,713,685	+		GFF3670	0.47	-0.7
3,713,702	-		GFF3670	0.49	+0.6
3,713,723	+		GFF3670	0.51	-1.7
3,713,731	-		GFF3670	0.52	-0.1
3,713,731	-		GFF3670	0.52	-1.7
3,713,748	-		GFF3670	0.55	-0.2
3,713,776	-		GFF3670	0.58	-0.1
3,713,792	-		GFF3670	0.60	-0.4
3,713,858	-		GFF3670	0.68	-1.4
3,713,910	+		GFF3670	0.75	+0.7
3,713,912	-		GFF3670	0.75	-1.4
3,713,951	+		GFF3670	0.80	+0.1
3,713,951	+		GFF3670	0.80	-0.6
3,713,959	-		GFF3670	0.81	-1.2
3,713,996	-		GFF3670	0.86	-0.2
3,714,016	+		GFF3670	0.88	+1.3
3,714,105	+				+1.0
3,714,113	-				+0.2
3,714,113	-				+0.2
3,714,113	-				-0.1
3,714,113	-				-1.7
3,714,113	-				-1.6
3,714,113	-				-2.8
3,714,113	-				-0.3
3,714,113	-				+1.6
3,714,113	-				-0.8
3,714,113	-				+0.7
3,714,137	+				-1.7
3,714,137	+				-1.2
3,714,190	+		GFF3671	0.14	-0.2
3,714,236	-		GFF3671	0.22	-0.2
3,714,265	-		GFF3671	0.26	+0.8
3,714,280	-		GFF3671	0.29	-3.3
3,714,285	+		GFF3671	0.30	+1.1
3,714,293	-		GFF3671	0.31	-0.1
3,714,346	+		GFF3671	0.40	+0.3
3,714,349	-		GFF3671	0.41	+0.8
3,714,351	+		GFF3671	0.41	+0.2
3,714,351	+		GFF3671	0.41	-2.0
3,714,351	+		GFF3671	0.41	-1.9
3,714,356	+		GFF3671	0.42	-0.2
3,714,356	+		GFF3671	0.42	-1.2
3,714,361	+		GFF3671	0.43	+0.2
3,714,397	+		GFF3671	0.49	-2.1
3,714,405	-		GFF3671	0.50	+0.3
3,714,508	-		GFF3671	0.67	-1.1
3,714,546	+		GFF3671	0.74	+0.4
3,714,602	+		GFF3671	0.83	-0.9
3,714,604	+		GFF3671	0.84	-1.4
3,714,612	-		GFF3671	0.85	-0.8
3,714,680	+				-0.8
3,714,680	+				-1.3
3,714,688	-				+0.0
3,714,690	-				-1.6
3,714,695	+				+1.1
3,714,702	+				-1.0
3,714,722	-				-0.8
3,714,735	-				-0.1
3,714,759	-				-1.3
3,714,762	+				+0.2
3,714,796	+				+0.7
3,714,799	-				+0.2
3,714,804	-				-1.6
3,714,804	-				-1.0
3,714,853	-				+0.3
3,714,853	-				+0.5
3,714,853	-				+0.3
3,714,891	-				+0.3
3,714,908	+		GFF3672	0.12	-0.4
3,714,915	+		GFF3672	0.13	-2.4
3,714,915	+		GFF3672	0.13	+0.3
3,714,923	-		GFF3672	0.14	-0.9
3,714,926	+		GFF3672	0.14	-0.2
3,714,966	+		GFF3672	0.19	-0.2
3,714,974	-		GFF3672	0.20	-0.7
3,714,974	-		GFF3672	0.20	-2.3
3,714,983	+		GFF3672	0.21	-2.3
3,714,983	+		GFF3672	0.21	+0.5
3,714,996	-		GFF3672	0.22	+0.2
3,715,026	-		GFF3672	0.26	-1.3
3,715,039	-		GFF3672	0.27	-0.3
3,715,059	-		GFF3672	0.30	-0.1
3,715,078	-		GFF3672	0.32	-0.3
3,715,090	+		GFF3672	0.33	-0.2
3,715,113	+		GFF3672	0.36	-0.5
3,715,135	+		GFF3672	0.38	-0.7
3,715,135	+		GFF3672	0.38	-0.8
3,715,138	-		GFF3672	0.39	-0.5
3,715,138	-		GFF3672	0.39	+0.5
3,715,143	-		GFF3672	0.39	+1.3
3,715,147	-		GFF3672	0.40	+0.1
3,715,164	+		GFF3672	0.42	+0.1
3,715,172	-		GFF3672	0.43	-1.8
3,715,172	-		GFF3672	0.43	+0.3
3,715,172	-		GFF3672	0.43	-0.9
3,715,172	-		GFF3672	0.43	-1.4
3,715,178	-		GFF3672	0.44	+1.0
3,715,183	-		GFF3672	0.44	-1.7
3,715,184	+		GFF3672	0.44	-0.6
3,715,184	+		GFF3672	0.44	-0.2
3,715,184	+		GFF3672	0.44	+1.0
3,715,184	+		GFF3672	0.44	+2.0
3,715,187	-		GFF3672	0.45	-1.3
3,715,225	+		GFF3672	0.49	+0.3
3,715,249	+		GFF3672	0.52	-1.3
3,715,249	+		GFF3672	0.52	+0.4
3,715,249	+		GFF3672	0.52	-0.6
3,715,249	+		GFF3672	0.52	-0.3
3,715,249	+		GFF3672	0.52	-1.2
3,715,257	-		GFF3672	0.53	-0.1
3,715,257	-		GFF3672	0.53	-1.6
3,715,257	-		GFF3672	0.53	-1.7
3,715,257	-		GFF3672	0.53	-0.4
3,715,257	-		GFF3672	0.53	+0.3
3,715,273	+		GFF3672	0.55	+0.4
3,715,279	+		GFF3672	0.55	-2.1
3,715,288	+		GFF3672	0.56	-0.9
3,715,301	+		GFF3672	0.58	+0.4
3,715,316	-		GFF3672	0.60	-0.1
3,715,326	-		GFF3672	0.61	-1.6
3,715,326	-		GFF3672	0.61	-0.2
3,715,331	+		GFF3672	0.61	+0.3
3,715,331	+		GFF3672	0.61	+0.6
3,715,331	+		GFF3672	0.61	-1.9
3,715,331	+		GFF3672	0.61	+1.4
3,715,331	+		GFF3672	0.61	-0.5
3,715,331	+		GFF3672	0.61	-0.7
3,715,331	+		GFF3672	0.61	-0.4
3,715,334	-		GFF3672	0.62	+0.3
3,715,339	-		GFF3672	0.62	-0.2
3,715,366	-		GFF3672	0.65	+0.3
3,715,367	-		GFF3672	0.66	-2.1
3,715,367	-		GFF3672	0.66	-0.1
3,715,368	-		GFF3672	0.66	-0.5
3,715,384	+		GFF3672	0.68	-0.8
3,715,390	+		GFF3672	0.68	+0.1
3,715,392	-		GFF3672	0.69	-0.3
3,715,400	-		GFF3672	0.69	-0.0
3,715,402	-		GFF3672	0.70	-0.2
3,715,404	+		GFF3672	0.70	-1.2
3,715,415	+		GFF3672	0.71	-0.3
3,715,423	-		GFF3672	0.72	+0.3
3,715,423	-		GFF3672	0.72	-1.8
3,715,423	-		GFF3672	0.72	-0.6
3,715,430	+		GFF3672	0.73	-1.4
3,715,435	+		GFF3672	0.74	+0.4
3,715,469	+		GFF3672	0.78	-1.7
3,715,478	+		GFF3672	0.79	+0.7
3,715,493	+		GFF3672	0.80	-3.0
3,715,493	+		GFF3672	0.80	+0.1
3,715,493	+		GFF3672	0.80	+0.7
3,715,493	+		GFF3672	0.80	-0.5
3,715,493	+		GFF3672	0.80	-0.6
3,715,493	+		GFF3672	0.80	-0.5
3,715,493	+		GFF3672	0.80	-1.1
3,715,493	+		GFF3672	0.80	+0.6
3,715,494	-		GFF3672	0.80	-0.5
3,715,498	+		GFF3672	0.81	-0.6
3,715,498	+		GFF3672	0.81	+0.7
3,715,499	+		GFF3672	0.81	-1.7
3,715,501	-		GFF3672	0.81	-0.1
3,715,501	-		GFF3672	0.81	+0.7
3,715,501	-		GFF3672	0.81	-0.7
3,715,501	-		GFF3672	0.81	-0.7
3,715,501	-		GFF3672	0.81	-0.3
3,715,501	-		GFF3672	0.81	-0.3
3,715,506	-		GFF3672	0.82	-1.7
3,715,536	+		GFF3672	0.85	+0.6
3,715,551	-		GFF3672	0.87	-0.7
3,715,559	+		GFF3672	0.88	-1.3
3,715,582	+				-1.7
3,715,590	-				+0.4
3,715,600	-				-0.4
3,715,608	+				-1.9
3,715,616	-				-2.1
3,715,631	+				+0.7
3,715,631	+				+0.0
3,715,631	+				+0.8
3,715,640	+				+0.8
3,715,674	+				+0.9
3,715,695	+				+1.3