Strain Fitness in Sphingobium sp. HT1-2 around GFF3657

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,697,842	-		GFF3654	0.35	-0.8
3,697,844	+		GFF3654	0.35	+0.2
3,697,845	-		GFF3654	0.36	-1.2
3,697,852	+		GFF3654	0.37	-2.4
3,697,854	-		GFF3654	0.37	-0.6
3,697,866	-		GFF3654	0.39	+0.8
3,697,868	+		GFF3654	0.40	-0.8
3,697,876	-		GFF3654	0.41	+0.4
3,697,887	+		GFF3654	0.43	-1.2
3,697,887	+		GFF3654	0.43	+0.8
3,697,901	+		GFF3654	0.46	-0.8
3,697,910	-		GFF3654	0.47	-0.6
3,697,910	-		GFF3654	0.47	-1.9
3,697,912	+		GFF3654	0.48	-1.3
3,697,924	+		GFF3654	0.50	-1.5
3,697,942	+		GFF3654	0.53	-0.4
3,697,950	-		GFF3654	0.54	-1.2
3,697,963	+		GFF3654	0.57	-1.9
3,697,963	+		GFF3654	0.57	+0.9
3,697,973	+		GFF3654	0.58	-1.6
3,697,977	-		GFF3654	0.59	-2.2
3,698,014	-		GFF3654	0.66	-1.3
3,698,014	-		GFF3654	0.66	-1.4
3,698,035	+		GFF3654	0.69	+0.8
3,698,057	+		GFF3654	0.73	-0.0
3,698,078	+		GFF3654	0.77	-0.4
3,698,086	-		GFF3654	0.78	-1.9
3,698,091	-		GFF3654	0.79	-0.5
3,698,103	+		GFF3654	0.81	-0.2
3,698,116	-		GFF3654	0.84	+1.1
3,698,123	+		GFF3654	0.85	-0.2
3,698,144	-		GFF3654	0.89	-1.2
3,698,201	+				-0.1
3,698,201	-				+0.7
3,698,219	-				+0.2
3,698,230	-		GFF3655	0.18	+0.2
3,698,259	+		GFF3655	0.43	-1.6
3,698,296	+		GFF3655	0.74	-0.7
3,698,309	+		GFF3655	0.85	+1.0
3,698,312	-		GFF3655	0.88	-0.6
3,698,312	-		GFF3655	0.88	-1.3
3,698,317	-				-0.2
3,698,317	-				-0.2
3,698,363	-				-1.5
3,698,372	+				-0.1
3,698,373	-				-0.0
3,698,379	+				-1.7
3,698,380	+				-1.2
3,698,380	+				-1.6
3,698,380	+				-1.8
3,698,388	-				+0.7
3,698,420	-				+0.4
3,698,423	+		GFF3656	0.10	-0.7
3,698,423	+		GFF3656	0.10	+0.4
3,698,423	+		GFF3656	0.10	-1.3
3,698,423	+		GFF3656	0.10	-0.2
3,698,423	+		GFF3656	0.10	-0.8
3,698,423	+		GFF3656	0.10	-0.3
3,698,426	-		GFF3656	0.11	-1.3
3,698,426	-		GFF3656	0.11	-0.8
3,698,431	-		GFF3656	0.12	-0.4
3,698,431	-		GFF3656	0.12	+0.2
3,698,446	+		GFF3656	0.16	+1.0
3,698,446	+		GFF3656	0.16	-1.6
3,698,446	+		GFF3656	0.16	+0.7
3,698,446	+		GFF3656	0.16	+0.4
3,698,446	+		GFF3656	0.16	+0.6
3,698,446	+		GFF3656	0.16	+0.2
3,698,446	+		GFF3656	0.16	+0.7
3,698,446	+		GFF3656	0.16	+0.5
3,698,448	-		GFF3656	0.17	-0.2
3,698,454	-		GFF3656	0.18	-1.2
3,698,454	-		GFF3656	0.18	+0.8
3,698,454	-		GFF3656	0.18	-0.1
3,698,454	-		GFF3656	0.18	+0.2
3,698,473	-		GFF3656	0.23	-1.7
3,698,473	-		GFF3656	0.23	-0.6
3,698,492	+		GFF3656	0.28	-0.2
3,698,492	+		GFF3656	0.28	-0.9
3,698,498	-		GFF3656	0.29	+0.3
3,698,500	-		GFF3656	0.30	-1.8
3,698,503	-		GFF3656	0.31	+0.7
3,698,508	+		GFF3656	0.32	+0.3
3,698,525	+		GFF3656	0.36	-0.3
3,698,547	-		GFF3656	0.42	+0.8
3,698,592	+		GFF3656	0.53	+0.3
3,698,593	+		GFF3656	0.53	-1.6
3,698,613	+		GFF3656	0.59	+0.4
3,698,613	+		GFF3656	0.59	-0.4
3,698,621	-		GFF3656	0.61	+1.2
3,698,646	+		GFF3656	0.67	-0.5
3,698,663	+		GFF3656	0.71	+2.2
3,698,665	+		GFF3656	0.72	+0.9
3,698,683	-		GFF3656	0.76	+1.9
3,698,727	+		GFF3656	0.88	-0.1
3,698,727	+		GFF3656	0.88	-0.2
3,698,735	-		GFF3656	0.90	-0.6
3,698,746	+				+0.8
3,698,757	+				-0.5
3,698,757	+				-0.5
3,698,765	-				-1.1
3,698,774	+				-0.2
3,698,774	+				+0.2
3,698,784	+				+1.9
3,698,784	+				+0.4
3,698,784	+				-2.5
3,698,784	+				+0.4
3,698,784	+				+0.7
3,698,784	+				-0.1
3,698,784	+				-0.6
3,698,784	+				-1.6
3,698,784	+				-0.2
3,698,784	+				-0.5
3,698,792	-				+0.0
3,698,792	-				-0.6
3,698,792	-				+1.4
3,698,804	-				-0.2
3,698,808	+				-0.5
3,698,808	+				+0.3
3,698,811	-				+0.8
3,698,811	-				+0.3
3,698,812	-				+0.9
3,698,816	-				-0.3
3,698,822	+				-1.9
3,698,830	-				-1.2
3,698,830	-				-0.2
3,698,841	+				-0.3
3,698,841	+				+1.2
3,698,844	+				-0.1
3,698,844	+				-0.6
3,698,846	+				-0.9
3,698,846	+				-0.8
3,698,846	+				+0.6
3,698,846	+				-1.8
3,698,846	+				-1.7
3,698,846	+				+0.2
3,698,846	+				+0.5
3,698,846	+				+0.2
3,698,846	+				-0.8
3,698,846	+				-0.3
3,698,846	+				-2.0
3,698,846	+				+1.1
3,698,846	+				+1.8
3,698,846	+				-1.1
3,698,846	+				+1.0
3,698,846	+				+0.7
3,698,846	+				-2.0
3,698,846	+				+0.9
3,698,846	+				-1.0
3,698,846	+				+0.7
3,698,846	+				+1.1
3,698,852	+				-0.3
3,698,852	+				-1.3
3,698,852	+				-1.3
3,698,852	+				+0.3
3,698,854	-				-0.6
3,698,854	-				-0.5
3,698,854	-				+0.4
3,698,854	-				+0.7
3,698,854	-				-1.7
3,698,854	-				+0.5
3,698,854	-				+0.8
3,698,854	-				-1.2
3,698,854	-				-1.0
3,698,854	-				-0.9
3,698,854	-				-0.0
3,698,854	-				+1.1
3,698,854	-				+0.2
3,698,854	-				-0.8
3,698,854	-				-0.1
3,698,854	-				+1.4
3,698,854	-				+0.1
3,698,859	-				-0.3
3,698,897	-				-0.7
3,698,902	-				+0.1
3,698,909	+				+0.2
3,698,913	+				+0.2
3,698,913	+				+0.3
3,698,913	+				-1.5
3,698,913	+				-0.4
3,698,913	+				+1.5
3,698,917	-				-0.3
3,698,928	-				-2.1
3,698,937	-				+1.2
3,698,938	+				+0.4
3,698,972	-				-0.9
3,698,998	-		GFF3657	0.11	+0.7
3,699,012	+		GFF3657	0.12	-1.1
3,699,020	-		GFF3657	0.13	-0.3
3,699,020	-		GFF3657	0.13	-0.6
3,699,020	-		GFF3657	0.13	-0.6
3,699,032	+		GFF3657	0.13	+0.9
3,699,056	+		GFF3657	0.15	-2.1
3,699,061	+		GFF3657	0.15	-0.3
3,699,064	-		GFF3657	0.16	+1.1
3,699,069	-		GFF3657	0.16	-0.5
3,699,085	+		GFF3657	0.17	-0.7
3,699,121	-		GFF3657	0.20	-0.8
3,699,131	-		GFF3657	0.20	-0.3
3,699,138	+		GFF3657	0.21	-1.2
3,699,143	+		GFF3657	0.21	-1.9
3,699,143	+		GFF3657	0.21	+0.8
3,699,143	+		GFF3657	0.21	+1.9
3,699,143	+		GFF3657	0.21	+0.8
3,699,143	+		GFF3657	0.21	+0.8
3,699,143	+		GFF3657	0.21	+0.2
3,699,143	+		GFF3657	0.21	+0.7
3,699,146	-		GFF3657	0.21	-0.9
3,699,151	-		GFF3657	0.22	-0.5
3,699,151	-		GFF3657	0.22	+0.4
3,699,151	-		GFF3657	0.22	-0.7
3,699,151	-		GFF3657	0.22	-1.1
3,699,151	-		GFF3657	0.22	-0.6
3,699,151	-		GFF3657	0.22	-0.6
3,699,151	-		GFF3657	0.22	-0.6
3,699,151	-		GFF3657	0.22	+0.7
3,699,161	+		GFF3657	0.22	-0.3
3,699,169	-		GFF3657	0.23	-0.2
3,699,169	-		GFF3657	0.23	-0.6
3,699,174	-		GFF3657	0.23	-0.3
3,699,212	-		GFF3657	0.26	+0.9
3,699,228	+		GFF3657	0.27	-1.0
3,699,236	-		GFF3657	0.28	-0.9
3,699,242	+		GFF3657	0.28	-1.1
3,699,242	+		GFF3657	0.28	+0.7
3,699,242	+		GFF3657	0.28	+0.4
3,699,242	+		GFF3657	0.28	+0.5
3,699,242	+		GFF3657	0.28	-3.2
3,699,250	-		GFF3657	0.29	+0.5
3,699,272	+		GFF3657	0.30	-0.6
3,699,272	+		GFF3657	0.30	-1.2
3,699,272	+		GFF3657	0.30	-1.2
3,699,272	+		GFF3657	0.30	+0.5
3,699,280	-		GFF3657	0.31	+0.1
3,699,290	-		GFF3657	0.31	-0.0
3,699,290	-		GFF3657	0.31	-0.8
3,699,291	+		GFF3657	0.32	-1.5
3,699,296	-		GFF3657	0.32	+0.3
3,699,301	+		GFF3657	0.32	-2.0
3,699,304	-		GFF3657	0.32	-1.8
3,699,306	+		GFF3657	0.33	-0.3
3,699,349	-		GFF3657	0.36	-0.3
3,699,389	+		GFF3657	0.38	-1.3
3,699,399	+		GFF3657	0.39	+0.5
3,699,399	+		GFF3657	0.39	+1.3
3,699,399	+		GFF3657	0.39	-0.7
3,699,399	+		GFF3657	0.39	-1.5
3,699,399	+		GFF3657	0.39	-0.1
3,699,407	-		GFF3657	0.40	-1.2
3,699,407	-		GFF3657	0.40	-0.5
3,699,407	-		GFF3657	0.40	+0.8
3,699,407	-		GFF3657	0.40	+1.0
3,699,407	-		GFF3657	0.40	+0.2
3,699,407	-		GFF3657	0.40	-0.4
3,699,407	-		GFF3657	0.40	-1.6
3,699,412	-		GFF3657	0.40	+1.8
3,699,412	-		GFF3657	0.40	+1.1
3,699,412	-		GFF3657	0.40	-0.5
3,699,417	+		GFF3657	0.40	-0.7
3,699,417	-		GFF3657	0.40	+1.1
3,699,428	+		GFF3657	0.41	-1.3
3,699,436	-		GFF3657	0.42	-0.3
3,699,461	-		GFF3657	0.43	-0.3
3,699,484	+		GFF3657	0.45	-1.6
3,699,537	+		GFF3657	0.49	-0.1
3,699,537	+		GFF3657	0.49	+0.1
3,699,539	-		GFF3657	0.49	-2.6
3,699,541	+		GFF3657	0.49	-0.1
3,699,561	+		GFF3657	0.50	-0.9
3,699,582	-		GFF3657	0.52	+0.7
3,699,585	+		GFF3657	0.52	-2.1
3,699,586	-		GFF3657	0.52	-2.7
3,699,603	+		GFF3657	0.53	+0.5
3,699,605	-		GFF3657	0.53	-2.3
3,699,605	-		GFF3657	0.53	+1.0
3,699,611	-		GFF3657	0.54	-0.5
3,699,611	-		GFF3657	0.54	-0.5
3,699,611	-		GFF3657	0.54	+0.5
3,699,643	+		GFF3657	0.56	+0.7
3,699,686	+		GFF3657	0.59	+0.2
3,699,692	+		GFF3657	0.59	-1.3
3,699,710	-		GFF3657	0.61	+0.3
3,699,715	+		GFF3657	0.61	-0.2
3,699,721	-		GFF3657	0.62	+0.5
3,699,723	-		GFF3657	0.62	-2.1
3,699,723	-		GFF3657	0.62	-1.2
3,699,735	+		GFF3657	0.62	-2.3
3,699,745	+		GFF3657	0.63	-0.8
3,699,745	+		GFF3657	0.63	-2.2
3,699,745	+		GFF3657	0.63	-0.1
3,699,745	+		GFF3657	0.63	-1.0
3,699,745	+		GFF3657	0.63	-0.8
3,699,745	+		GFF3657	0.63	-0.4
3,699,745	+		GFF3657	0.63	-0.1
3,699,748	-		GFF3657	0.63	-1.1
3,699,753	-		GFF3657	0.64	-0.4
3,699,753	-		GFF3657	0.64	+0.8
3,699,753	-		GFF3657	0.64	+0.4
3,699,753	-		GFF3657	0.64	-0.9
3,699,753	-		GFF3657	0.64	-1.0
3,699,753	-		GFF3657	0.64	+0.3
3,699,773	+		GFF3657	0.65	+0.3
3,699,773	+		GFF3657	0.65	-1.9
3,699,775	-		GFF3657	0.65	-2.1
3,699,783	-		GFF3657	0.66	+0.8
3,699,789	+		GFF3657	0.66	-2.1
3,699,794	+		GFF3657	0.67	+0.2
3,699,797	-		GFF3657	0.67	-0.8
3,699,797	-		GFF3657	0.67	-1.9
3,699,799	+		GFF3657	0.67	-1.6
3,699,817	+		GFF3657	0.68	-1.2
3,699,872	+		GFF3657	0.72	+0.2
3,699,882	+		GFF3657	0.73	+0.4
3,699,882	+		GFF3657	0.73	+0.2
3,699,882	+		GFF3657	0.73	+0.0
3,699,882	+		GFF3657	0.73	+0.0
3,699,882	+		GFF3657	0.73	+0.4
3,699,883	+		GFF3657	0.73	-0.9
3,699,890	-		GFF3657	0.73	+0.8
3,699,890	-		GFF3657	0.73	-1.1
3,699,891	-		GFF3657	0.73	-1.3
3,699,919	-		GFF3657	0.75	-0.6
3,699,949	-		GFF3657	0.77	-2.8
3,699,971	+		GFF3657	0.79	-2.6
3,699,974	+		GFF3657	0.79	+0.9
3,699,984	-		GFF3657	0.80	+0.1
3,699,997	-		GFF3657	0.81	-1.2
3,700,011	+		GFF3657	0.82	-1.6
3,700,019	-		GFF3657	0.82	+0.9
3,700,028	+		GFF3657	0.83	-1.2
3,700,036	-		GFF3657	0.83	-0.2
3,700,037	-		GFF3657	0.84	-1.7
3,700,058	+		GFF3657	0.85	-0.6
3,700,058	+		GFF3657	0.85	-1.1
3,700,058	+		GFF3657	0.85	-0.3
3,700,066	-		GFF3657	0.86	+0.2
3,700,066	-		GFF3657	0.86	-0.7
3,700,066	-		GFF3657	0.86	+0.4
3,700,070	+		GFF3657	0.86	+1.9
3,700,080	+		GFF3657	0.87	-0.6
3,700,080	+		GFF3657	0.87	+0.4
3,700,086	-		GFF3657	0.87	+0.5
3,700,088	-		GFF3657	0.87	+0.9
3,700,102	+		GFF3657	0.88	+1.2
3,700,104	+		GFF3657	0.88	-0.6
3,700,112	-		GFF3657	0.89	+0.5
3,700,138	+				-0.1
3,700,144	-				+0.3
3,700,146	+				+1.1
3,700,146	-				-2.1
3,700,159	+				+0.4
3,700,174	+				-0.5
3,700,177	-				-0.2
3,700,209	+				-1.3
3,700,222	+				-1.6
3,700,228	-				+0.8
3,700,238	-				-2.0
3,700,238	-				+0.0
3,700,238	-				-0.8
3,700,268	+				-0.3
3,700,269	+				+0.2
3,700,272	-				+0.7
3,700,276	-				+1.2
3,700,277	-				+0.8
3,700,318	+				-0.7
3,700,318	+				+0.2
3,700,326	-				-0.5
3,700,326	-				-0.1
3,700,340	+				-0.2
3,700,354	+				-1.3
3,700,395	-				-0.4
3,700,397	+				-0.3
3,700,411	+				-0.1
3,700,424	+				-0.5
3,700,462	+				-0.9
3,700,470	-				-0.8
3,700,472	+				-1.7
3,700,472	+				-1.1
3,700,474	-				-0.0
3,700,486	+				+0.3
3,700,492	-				+1.0
3,700,554	+				-0.4
3,700,559	+				-1.4
3,700,563	+				-1.8
3,700,564	+				+0.4
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