Strain Fitness in Sphingobium sp. HT1-2 around GFF3630

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,678,142	-		GFF3629	0.21	-0.7
3,678,142	-		GFF3629	0.21	+0.0
3,678,186	-		GFF3629	0.24	-0.9
3,678,238	+		GFF3629	0.29	-0.5
3,678,245	+		GFF3629	0.29	+0.2
3,678,263	+		GFF3629	0.31	-0.6
3,678,278	+		GFF3629	0.32	+0.4
3,678,278	+		GFF3629	0.32	-0.2
3,678,278	+		GFF3629	0.32	-0.8
3,678,278	+		GFF3629	0.32	+0.2
3,678,284	-		GFF3629	0.32	-1.4
3,678,286	-		GFF3629	0.32	+0.6
3,678,286	-		GFF3629	0.32	+0.5
3,678,286	-		GFF3629	0.32	-0.5
3,678,286	-		GFF3629	0.32	+1.1
3,678,303	+		GFF3629	0.34	+1.2
3,678,309	-		GFF3629	0.34	-0.9
3,678,320	+		GFF3629	0.35	+0.2
3,678,320	-		GFF3629	0.35	+0.9
3,678,321	+		GFF3629	0.35	-1.5
3,678,333	+		GFF3629	0.36	-0.8
3,678,335	+		GFF3629	0.36	-1.2
3,678,371	+		GFF3629	0.39	+0.3
3,678,372	+		GFF3629	0.39	-1.4
3,678,372	+		GFF3629	0.39	+0.9
3,678,376	-		GFF3629	0.40	-1.0
3,678,380	-		GFF3629	0.40	-0.3
3,678,380	-		GFF3629	0.40	+0.1
3,678,382	+		GFF3629	0.40	-1.2
3,678,390	-		GFF3629	0.41	+1.4
3,678,404	-		GFF3629	0.42	-0.6
3,678,415	+		GFF3629	0.43	+1.0
3,678,415	+		GFF3629	0.43	-1.4
3,678,423	-		GFF3629	0.43	-0.6
3,678,423	-		GFF3629	0.43	-0.0
3,678,428	-		GFF3629	0.44	+0.1
3,678,442	+		GFF3629	0.45	-0.9
3,678,452	+		GFF3629	0.46	-1.1
3,678,460	-		GFF3629	0.46	-1.2
3,678,460	-		GFF3629	0.46	-0.5
3,678,460	-		GFF3629	0.46	-0.0
3,678,469	+		GFF3629	0.47	+0.2
3,678,477	-		GFF3629	0.48	-1.6
3,678,481	+		GFF3629	0.48	-0.4
3,678,481	+		GFF3629	0.48	-0.7
3,678,481	+		GFF3629	0.48	-1.8
3,678,488	-		GFF3629	0.48	-0.6
3,678,489	-		GFF3629	0.48	-0.2
3,678,489	-		GFF3629	0.48	+1.9
3,678,489	-		GFF3629	0.48	-0.5
3,678,489	-		GFF3629	0.48	+1.6
3,678,490	+		GFF3629	0.49	+0.3
3,678,490	+		GFF3629	0.49	+0.9
3,678,498	-		GFF3629	0.49	-2.2
3,678,505	+		GFF3629	0.50	-0.7
3,678,508	-		GFF3629	0.50	+0.2
3,678,508	-		GFF3629	0.50	-0.4
3,678,508	-		GFF3629	0.50	+1.2
3,678,510	+		GFF3629	0.50	-0.8
3,678,513	-		GFF3629	0.50	-0.2
3,678,513	-		GFF3629	0.50	-2.2
3,678,513	-		GFF3629	0.50	-0.1
3,678,540	+		GFF3629	0.52	-0.2
3,678,540	+		GFF3629	0.52	+0.4
3,678,547	-		GFF3629	0.53	-1.5
3,678,547	-		GFF3629	0.53	-0.4
3,678,573	+		GFF3629	0.55	-2.2
3,678,603	-		GFF3629	0.57	-0.0
3,678,605	+		GFF3629	0.58	+0.4
3,678,613	-		GFF3629	0.58	+0.2
3,678,621	+		GFF3629	0.59	+0.3
3,678,621	+		GFF3629	0.59	+1.7
3,678,630	+		GFF3629	0.60	+0.4
3,678,634	-		GFF3629	0.60	-0.5
3,678,634	-		GFF3629	0.60	+0.4
3,678,637	+		GFF3629	0.60	+1.1
3,678,701	-		GFF3629	0.65	-0.5
3,678,717	+		GFF3629	0.67	-0.9
3,678,745	-		GFF3629	0.69	-0.2
3,678,745	-		GFF3629	0.69	+0.9
3,678,757	+		GFF3629	0.70	-2.2
3,678,784	+		GFF3629	0.72	-0.9
3,678,786	-		GFF3629	0.72	-0.4
3,678,792	+		GFF3629	0.72	-0.6
3,678,792	+		GFF3629	0.72	-0.6
3,678,792	-		GFF3629	0.72	+0.2
3,678,799	+		GFF3629	0.73	-0.8
3,678,799	+		GFF3629	0.73	+0.3
3,678,800	-		GFF3629	0.73	-0.9
3,678,817	-		GFF3629	0.74	+1.5
3,678,827	+		GFF3629	0.75	+0.2
3,678,832	+		GFF3629	0.76	-0.2
3,678,840	-		GFF3629	0.76	-0.8
3,678,843	+		GFF3629	0.76	-0.4
3,678,860	+		GFF3629	0.78	-1.5
3,678,868	-		GFF3629	0.78	-0.4
3,678,869	+		GFF3629	0.79	+0.0
3,678,869	+		GFF3629	0.79	-0.8
3,678,872	-		GFF3629	0.79	-2.5
3,678,890	+		GFF3629	0.80	+0.7
3,678,903	+		GFF3629	0.81	-0.4
3,678,989	+		GFF3629	0.88	-1.9
3,679,012	+		GFF3629	0.90	-0.8
3,679,012	+		GFF3629	0.90	-0.3
3,679,012	+		GFF3629	0.90	+1.1
3,679,017	+				-1.2
3,679,018	-				-0.0
3,679,020	-				+0.4
3,679,025	-				-1.2
3,679,025	-				-0.2
3,679,025	-				+0.4
3,679,030	-				-0.8
3,679,035	-				+0.5
3,679,037	-				+0.0
3,679,055	+				-2.5
3,679,087	-				+0.8
3,679,094	-				+0.8
3,679,104	+				+1.1
3,679,109	+				-1.8
3,679,109	+				+0.1
3,679,109	+				-0.2
3,679,109	+				-0.2
3,679,109	+				-0.4
3,679,112	-				+0.9
3,679,117	-				+0.5
3,679,117	-				+0.3
3,679,117	-				-1.2
3,679,127	-				+0.4
3,679,127	-				-0.6
3,679,127	-				-0.0
3,679,134	+				-1.7
3,679,134	+				-0.7
3,679,134	+				+0.6
3,679,135	+				+0.2
3,679,140	-				-0.3
3,679,154	+				-0.6
3,679,162	+				-0.3
3,679,162	-				+0.6
3,679,162	-				-1.6
3,679,162	-				-0.3
3,679,163	+				+0.0
3,679,163	-				+0.8
3,679,194	-				-0.2
3,679,207	-		GFF3630	0.12	-0.2
3,679,207	-		GFF3630	0.12	-0.1
3,679,207	-		GFF3630	0.12	-1.5
3,679,207	-		GFF3630	0.12	+0.6
3,679,207	-		GFF3630	0.12	+1.0
3,679,227	-		GFF3630	0.15	+0.1
3,679,241	-		GFF3630	0.17	-0.3
3,679,274	+		GFF3630	0.22	+1.5
3,679,314	-		GFF3630	0.29	+0.2
3,679,343	+		GFF3630	0.34	+0.9
3,679,343	+		GFF3630	0.34	-1.2
3,679,346	-		GFF3630	0.34	+0.3
3,679,348	+		GFF3630	0.34	-0.6
3,679,351	-		GFF3630	0.35	-2.4
3,679,358	+		GFF3630	0.36	+0.8
3,679,365	+		GFF3630	0.37	-0.6
3,679,373	-		GFF3630	0.39	+1.2
3,679,382	-		GFF3630	0.40	-0.4
3,679,389	+		GFF3630	0.41	-0.5
3,679,399	+		GFF3630	0.43	-0.2
3,679,401	+		GFF3630	0.43	-3.0
3,679,445	-		GFF3630	0.50	+0.3
3,679,445	-		GFF3630	0.50	+1.0
3,679,456	+		GFF3630	0.52	-0.9
3,679,482	-		GFF3630	0.56	+0.9
3,679,483	+		GFF3630	0.56	-1.5
3,679,483	+		GFF3630	0.56	+0.8
3,679,491	-		GFF3630	0.58	-0.2
3,679,508	-		GFF3630	0.60	-0.4
3,679,509	+		GFF3630	0.61	-0.5
3,679,509	+		GFF3630	0.61	+0.8
3,679,509	+		GFF3630	0.61	-0.1
3,679,511	+		GFF3630	0.61	+0.3
3,679,517	-		GFF3630	0.62	-0.0
3,679,517	-		GFF3630	0.62	+0.9
3,679,517	-		GFF3630	0.62	+0.4
3,679,529	+		GFF3630	0.64	-0.7
3,679,538	+		GFF3630	0.65	-1.1
3,679,544	+		GFF3630	0.66	+1.1
3,679,563	+		GFF3630	0.69	+0.7
3,679,573	+		GFF3630	0.71	-0.3
3,679,585	-		GFF3630	0.73	-1.9
3,679,624	+		GFF3630	0.79	+0.1
3,679,624	-		GFF3630	0.79	-1.8
3,679,632	-		GFF3630	0.81	-1.6
3,679,632	-		GFF3630	0.81	-0.4
3,679,643	-		GFF3630	0.82	-1.9
3,679,675	+		GFF3630	0.88	-1.1
3,679,679	+		GFF3630	0.88	+1.2
3,679,679	+		GFF3630	0.88	-0.9
3,679,679	+		GFF3630	0.88	+0.6
3,679,679	+		GFF3630	0.88	+0.7
3,679,683	-		GFF3630	0.89	-0.3
3,679,687	-		GFF3630	0.90	+0.4
3,679,687	-		GFF3630	0.90	-0.2
3,679,712	+				-1.0
3,679,712	+				-2.1
3,679,720	-				-0.0
3,679,757	+				+1.4
3,679,757	+				-0.1
3,679,785	-				-0.5
3,679,789	+				-1.9
3,679,805	-				-0.1
3,679,877	+		GFF3631	0.16	-1.3
3,679,879	-		GFF3631	0.17	-0.3
3,679,884	+		GFF3631	0.17	-1.8
3,679,884	+		GFF3631	0.17	-0.7
3,679,884	+		GFF3631	0.17	-3.4
3,679,892	-		GFF3631	0.18	-0.5
3,679,925	-		GFF3631	0.22	-1.2
3,679,940	-		GFF3631	0.24	-0.5
3,679,950	+		GFF3631	0.26	-0.7
3,679,958	+		GFF3631	0.27	-1.1
3,679,958	-		GFF3631	0.27	-0.2
3,679,960	-		GFF3631	0.27	+0.5
3,680,001	+		GFF3631	0.32	-0.7
3,680,009	-		GFF3631	0.33	-0.2
3,680,019	-		GFF3631	0.34	+0.1
3,680,051	-		GFF3631	0.38	-1.2
3,680,086	-		GFF3631	0.43	-0.7
3,680,090	+		GFF3631	0.43	-0.2
3,680,093	-		GFF3631	0.44	-2.8
3,680,095	+		GFF3631	0.44	+0.1
3,680,095	+		GFF3631	0.44	-1.4
3,680,095	+		GFF3631	0.44	-1.8
3,680,095	+		GFF3631	0.44	+1.1
3,680,095	+		GFF3631	0.44	-0.0
3,680,096	-		GFF3631	0.44	+1.0
3,680,103	-		GFF3631	0.45	+0.6
3,680,103	-		GFF3631	0.45	+0.6
3,680,103	-		GFF3631	0.45	-1.8
3,680,103	-		GFF3631	0.45	-0.4
3,680,103	-		GFF3631	0.45	-1.7
3,680,103	-		GFF3631	0.45	+0.1
3,680,120	+		GFF3631	0.47	+0.5
3,680,120	+		GFF3631	0.47	+0.6
3,680,120	+		GFF3631	0.47	-0.3
3,680,120	+		GFF3631	0.47	+0.7
3,680,120	+		GFF3631	0.47	+0.9
3,680,123	-		GFF3631	0.47	-0.7
3,680,128	-		GFF3631	0.48	-1.7
3,680,128	-		GFF3631	0.48	+0.2
3,680,128	-		GFF3631	0.48	-2.2
3,680,128	-		GFF3631	0.48	+1.6
3,680,128	-		GFF3631	0.48	+0.7
3,680,134	-		GFF3631	0.49	+0.4
3,680,138	-		GFF3631	0.49	+0.9
3,680,157	+		GFF3631	0.52	-1.9
3,680,157	+		GFF3631	0.52	-2.9
3,680,171	-		GFF3631	0.54	-0.1
3,680,176	-		GFF3631	0.54	-0.0
3,680,183	+		GFF3631	0.55	+0.5
3,680,191	-		GFF3631	0.56	-0.3
3,680,221	-		GFF3631	0.60	+0.2
3,680,225	-		GFF3631	0.60	-0.8
3,680,258	+		GFF3631	0.65	-0.3
3,680,275	-		GFF3631	0.67	+0.8
3,680,275	-		GFF3631	0.67	-1.9
3,680,295	-		GFF3631	0.69	+1.1
3,680,298	+		GFF3631	0.70	+1.6
3,680,298	+		GFF3631	0.70	+0.8
3,680,298	+		GFF3631	0.70	-0.5
3,680,298	+		GFF3631	0.70	-1.2
3,680,298	+		GFF3631	0.70	-0.6
3,680,298	+		GFF3631	0.70	-0.9
3,680,298	+		GFF3631	0.70	-2.6
3,680,298	+		GFF3631	0.70	+0.0
3,680,300	+		GFF3631	0.70	+0.9
3,680,306	-		GFF3631	0.71	+0.7
3,680,306	-		GFF3631	0.71	+0.5
3,680,308	-		GFF3631	0.71	-0.2
3,680,308	-		GFF3631	0.71	+0.5
3,680,326	-		GFF3631	0.73	-0.7
3,680,330	-		GFF3631	0.74	+0.3
3,680,331	-		GFF3631	0.74	-1.6
3,680,354	-		GFF3631	0.77	-2.3
3,680,371	-		GFF3631	0.79	-0.1
3,680,372	-		GFF3631	0.79	-1.5
3,680,372	-		GFF3631	0.79	+0.2
3,680,374	+		GFF3631	0.79	-0.1
3,680,374	+		GFF3631	0.79	+1.5
3,680,374	+		GFF3631	0.79	-0.9
3,680,420	-		GFF3631	0.85	-0.2
3,680,453	+		GFF3631	0.89	-0.4
3,680,491	-				+1.6
3,680,496	+				-0.7
3,680,496	-				+1.4
3,680,506	+				-0.2
3,680,547	-				-0.7
3,680,549	+				-0.8
3,680,549	+				+0.4
3,680,552	-				-0.4
3,680,552	-				-0.4
3,680,554	+				-1.1
3,680,557	-				-1.5
3,680,557	-				-1.6
3,680,557	-				+0.9
3,680,573	-				-0.2
3,680,580	+				-0.8
3,680,580	+				-0.4
3,680,588	-				+1.5
3,680,594	+				-0.9
3,680,597	-				+0.3
3,680,598	-				+0.0
3,680,598	-				-0.7
3,680,602	-				+1.2
3,680,602	-				-0.4
3,680,611	-				-3.2
3,680,616	-				+1.1
3,680,626	+		GFF3632	0.10	+0.2
3,680,633	-		GFF3632	0.11	-0.7
3,680,634	-		GFF3632	0.11	+1.2
3,680,634	-		GFF3632	0.11	-0.7
3,680,639	-		GFF3632	0.12	+1.8
3,680,690	-		GFF3632	0.18	-0.8
3,680,693	+		GFF3632	0.19	-0.7
3,680,710	+		GFF3632	0.21	-0.3
3,680,715	+		GFF3632	0.21	+0.3
3,680,718	-		GFF3632	0.22	+0.8
3,680,718	-		GFF3632	0.22	+1.1
3,680,718	-		GFF3632	0.22	+0.3
3,680,720	+		GFF3632	0.22	-0.9
3,680,723	-		GFF3632	0.22	-0.1
3,680,725	+		GFF3632	0.22	-0.7
3,680,746	+		GFF3632	0.25	-0.7