Strain Fitness in Sphingobium sp. HT1-2 around GFF3628

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,675,775	+				+0.7
3,675,775	+				-1.3
3,675,775	+				+1.4
3,675,782	+				+0.6
3,675,783	-				+0.7
3,675,783	-				-0.4
3,675,805	-				-1.3
3,675,817	+				+1.0
3,675,844	-				+0.4
3,675,844	-				-0.2
3,675,849	-				-0.9
3,675,851	-				-1.1
3,675,862	+				+0.2
3,675,863	+				-1.2
3,675,863	+				+2.0
3,675,863	+				+0.2
3,675,863	+				-0.3
3,675,863	+				-0.5
3,675,863	+				+0.6
3,675,871	-				-1.1
3,675,871	-				-1.9
3,675,876	-				+0.4
3,675,887	+				+0.3
3,675,899	-				-1.9
3,675,901	+				-0.4
3,675,901	+				+0.3
3,675,901	+				-0.4
3,675,901	+				+0.1
3,675,901	+				-0.4
3,675,909	-		GFF3627	0.10	+1.0
3,675,909	-		GFF3627	0.10	-0.1
3,675,916	+		GFF3627	0.11	-0.2
3,675,916	+		GFF3627	0.11	-1.8
3,675,924	-		GFF3627	0.12	-1.9
3,675,929	+		GFF3627	0.12	+1.1
3,675,998	+		GFF3627	0.19	+0.3
3,675,998	+		GFF3627	0.19	+0.2
3,676,006	-		GFF3627	0.20	+0.3
3,676,011	-		GFF3627	0.21	+0.8
3,676,013	+		GFF3627	0.21	-0.2
3,676,018	+		GFF3627	0.22	+0.2
3,676,018	+		GFF3627	0.22	+0.2
3,676,018	+		GFF3627	0.22	+0.3
3,676,018	+		GFF3627	0.22	+0.5
3,676,018	+		GFF3627	0.22	+0.9
3,676,018	+		GFF3627	0.22	-1.8
3,676,023	+		GFF3627	0.22	-1.0
3,676,026	-		GFF3627	0.22	+0.3
3,676,026	-		GFF3627	0.22	+0.1
3,676,031	-		GFF3627	0.23	-0.8
3,676,031	-		GFF3627	0.23	-1.2
3,676,031	-		GFF3627	0.23	+0.2
3,676,031	-		GFF3627	0.23	-1.5
3,676,031	-		GFF3627	0.23	-2.2
3,676,040	+		GFF3627	0.24	+0.5
3,676,054	+		GFF3627	0.25	+0.6
3,676,071	-		GFF3627	0.27	+0.1
3,676,076	-		GFF3627	0.28	-1.2
3,676,122	+		GFF3627	0.32	-1.6
3,676,124	-		GFF3627	0.33	+0.9
3,676,170	+		GFF3627	0.38	-0.4
3,676,190	+		GFF3627	0.40	-0.4
3,676,190	+		GFF3627	0.40	+0.7
3,676,190	+		GFF3627	0.40	-0.7
3,676,198	-		GFF3627	0.40	-0.0
3,676,198	-		GFF3627	0.40	+0.1
3,676,198	-		GFF3627	0.40	+0.4
3,676,199	+		GFF3627	0.41	-0.5
3,676,207	+		GFF3627	0.41	-0.6
3,676,232	+		GFF3627	0.44	+0.4
3,676,232	+		GFF3627	0.44	-0.5
3,676,240	-		GFF3627	0.45	+0.5
3,676,240	-		GFF3627	0.45	-0.8
3,676,242	+		GFF3627	0.45	+0.1
3,676,242	+		GFF3627	0.45	+0.8
3,676,242	+		GFF3627	0.45	+1.3
3,676,242	+		GFF3627	0.45	-0.6
3,676,242	+		GFF3627	0.45	+0.3
3,676,242	+		GFF3627	0.45	-1.5
3,676,250	-		GFF3627	0.46	-0.8
3,676,266	+		GFF3627	0.48	-0.8
3,676,272	+		GFF3627	0.48	-0.5
3,676,272	+		GFF3627	0.48	-0.9
3,676,272	+		GFF3627	0.48	-0.6
3,676,272	+		GFF3627	0.48	-0.5
3,676,272	+		GFF3627	0.48	+0.1
3,676,273	+		GFF3627	0.48	-0.3
3,676,280	-		GFF3627	0.49	+0.1
3,676,280	-		GFF3627	0.49	-1.0
3,676,280	-		GFF3627	0.49	-1.4
3,676,280	-		GFF3627	0.49	+0.1
3,676,280	-		GFF3627	0.49	+0.3
3,676,280	-		GFF3627	0.49	-1.2
3,676,280	-		GFF3627	0.49	-0.6
3,676,286	-		GFF3627	0.50	-0.0
3,676,311	+		GFF3627	0.52	-0.2
3,676,311	+		GFF3627	0.52	+0.6
3,676,311	+		GFF3627	0.52	+1.3
3,676,311	+		GFF3627	0.52	+0.6
3,676,319	-		GFF3627	0.53	-1.8
3,676,319	-		GFF3627	0.53	-1.7
3,676,324	+		GFF3627	0.54	+1.4
3,676,324	+		GFF3627	0.54	+0.0
3,676,324	+		GFF3627	0.54	-0.5
3,676,324	+		GFF3627	0.54	+0.1
3,676,324	+		GFF3627	0.54	+0.1
3,676,325	+		GFF3627	0.54	-1.4
3,676,332	-		GFF3627	0.55	-1.0
3,676,372	+		GFF3627	0.59	-0.9
3,676,373	+		GFF3627	0.59	-0.1
3,676,373	+		GFF3627	0.59	-1.8
3,676,375	-		GFF3627	0.59	-1.3
3,676,375	-		GFF3627	0.59	-0.4
3,676,376	-		GFF3627	0.59	+1.5
3,676,381	-		GFF3627	0.60	-0.1
3,676,381	-		GFF3627	0.60	+0.5
3,676,381	-		GFF3627	0.60	-0.2
3,676,383	+		GFF3627	0.60	-0.3
3,676,383	+		GFF3627	0.60	-0.1
3,676,391	-		GFF3627	0.61	+0.6
3,676,391	-		GFF3627	0.61	-1.2
3,676,391	-		GFF3627	0.61	+0.1
3,676,395	-		GFF3627	0.61	-0.0
3,676,493	+		GFF3627	0.71	+0.9
3,676,493	+		GFF3627	0.71	-0.4
3,676,493	+		GFF3627	0.71	-1.0
3,676,501	-		GFF3627	0.72	+0.2
3,676,501	-		GFF3627	0.72	-2.3
3,676,501	-		GFF3627	0.72	-0.8
3,676,501	-		GFF3627	0.72	+1.3
3,676,524	-		GFF3627	0.75	-0.2
3,676,524	-		GFF3627	0.75	-0.7
3,676,524	-		GFF3627	0.75	+0.3
3,676,525	-		GFF3627	0.75	-0.3
3,676,535	+		GFF3627	0.76	+0.9
3,676,581	-		GFF3627	0.81	+0.3
3,676,588	-		GFF3627	0.81	-0.9
3,676,632	+		GFF3627	0.86	-0.0
3,676,632	+		GFF3627	0.86	-1.5
3,676,632	+		GFF3627	0.86	-1.0
3,676,632	+		GFF3627	0.86	+0.4
3,676,633	-		GFF3627	0.86	-0.5
3,676,637	+		GFF3627	0.86	-1.9
3,676,637	+		GFF3627	0.86	-0.2
3,676,637	+		GFF3627	0.86	-2.7
3,676,637	+		GFF3627	0.86	-0.6
3,676,640	-		GFF3627	0.87	-0.0
3,676,640	-		GFF3627	0.87	+0.0
3,676,640	-		GFF3627	0.87	-2.2
3,676,645	-		GFF3627	0.87	-0.8
3,676,645	-		GFF3627	0.87	-0.4
3,676,668	+		GFF3627	0.90	-0.6
3,676,669	-		GFF3627	0.90	-0.5
3,676,670	+				+0.3
3,676,676	-				+0.9
3,676,687	+				-1.8
3,676,688	+				+0.5
3,676,705	+				-0.9
3,676,706	+				+1.1
3,676,727	-				+0.4
3,676,768	-				+1.2
3,676,791	-				+0.4
3,676,791	-				-0.4
3,676,797	-				+1.1
3,676,808	+				-0.6
3,676,847	+				+0.3
3,676,847	-				-0.2
3,676,855	-				-1.5
3,676,865	+				+1.0
3,676,878	+		GFF3628	0.10	-0.5
3,676,902	-		GFF3628	0.12	-1.6
3,676,932	+		GFF3628	0.15	-0.9
3,676,934	+		GFF3628	0.15	+0.5
3,676,940	-		GFF3628	0.16	-2.6
3,676,940	-		GFF3628	0.16	-0.5
3,676,940	-		GFF3628	0.16	-1.3
3,676,940	-		GFF3628	0.16	-0.3
3,676,942	+		GFF3628	0.16	+1.1
3,676,942	+		GFF3628	0.16	+0.0
3,676,947	+		GFF3628	0.17	+0.0
3,676,950	-		GFF3628	0.17	-0.4
3,676,970	-		GFF3628	0.19	+1.0
3,676,977	+		GFF3628	0.19	-0.8
3,676,985	-		GFF3628	0.20	-0.8
3,676,985	-		GFF3628	0.20	-0.4
3,676,990	-		GFF3628	0.20	-0.2
3,676,996	+		GFF3628	0.21	-0.9
3,676,998	+		GFF3628	0.21	-1.0
3,677,004	-		GFF3628	0.22	+0.0
3,677,005	+		GFF3628	0.22	+0.1
3,677,013	-		GFF3628	0.23	-0.5
3,677,013	-		GFF3628	0.23	-1.8
3,677,042	+		GFF3628	0.25	-0.4
3,677,077	+		GFF3628	0.28	+0.0
3,677,077	+		GFF3628	0.28	+0.6
3,677,077	+		GFF3628	0.28	-0.9
3,677,081	+		GFF3628	0.29	-0.6
3,677,087	+		GFF3628	0.29	-0.1
3,677,090	-		GFF3628	0.30	+0.2
3,677,122	-		GFF3628	0.33	-0.4
3,677,147	-		GFF3628	0.35	-0.7
3,677,234	+		GFF3628	0.43	-0.8
3,677,234	+		GFF3628	0.43	-1.2
3,677,239	+		GFF3628	0.43	+0.0
3,677,239	+		GFF3628	0.43	-1.0
3,677,239	+		GFF3628	0.43	-0.9
3,677,242	-		GFF3628	0.44	+1.3
3,677,242	-		GFF3628	0.44	-2.1
3,677,244	+		GFF3628	0.44	-0.2
3,677,244	+		GFF3628	0.44	-0.9
3,677,244	+		GFF3628	0.44	-0.2
3,677,244	+		GFF3628	0.44	-0.3
3,677,244	+		GFF3628	0.44	+0.4
3,677,244	+		GFF3628	0.44	-0.5
3,677,244	+		GFF3628	0.44	-0.1
3,677,244	+		GFF3628	0.44	+1.2
3,677,247	-		GFF3628	0.44	-0.1
3,677,248	-		GFF3628	0.44	+1.3
3,677,252	-		GFF3628	0.45	-0.6
3,677,252	-		GFF3628	0.45	+0.8
3,677,252	-		GFF3628	0.45	-1.0
3,677,252	-		GFF3628	0.45	+0.2
3,677,252	-		GFF3628	0.45	+0.1
3,677,252	-		GFF3628	0.45	+1.3
3,677,252	-		GFF3628	0.45	+0.6
3,677,252	-		GFF3628	0.45	+0.1
3,677,286	-		GFF3628	0.48	-1.7
3,677,373	+		GFF3628	0.56	-1.2
3,677,381	-		GFF3628	0.56	-1.3
3,677,392	+		GFF3628	0.57	+0.2
3,677,398	+		GFF3628	0.58	+0.2
3,677,420	-		GFF3628	0.60	-0.3
3,677,445	+		GFF3628	0.62	-1.5
3,677,477	+		GFF3628	0.65	-1.1
3,677,479	+		GFF3628	0.65	-0.5
3,677,479	+		GFF3628	0.65	-0.7
3,677,486	-		GFF3628	0.66	-1.1
3,677,487	-		GFF3628	0.66	-1.5
3,677,488	+		GFF3628	0.66	-0.4
3,677,510	+		GFF3628	0.68	-1.2
3,677,514	+		GFF3628	0.69	+0.1
3,677,519	+		GFF3628	0.69	-0.5
3,677,522	-		GFF3628	0.69	-0.8
3,677,543	-		GFF3628	0.71	+0.9
3,677,560	+		GFF3628	0.73	-0.5
3,677,570	+		GFF3628	0.74	-0.2
3,677,578	+		GFF3628	0.74	-0.5
3,677,604	+		GFF3628	0.77	-0.6
3,677,604	-		GFF3628	0.77	-2.7
3,677,609	+		GFF3628	0.77	-1.0
3,677,609	+		GFF3628	0.77	-1.2
3,677,687	-		GFF3628	0.84	-0.4
3,677,705	-		GFF3628	0.86	-1.0
3,677,711	+		GFF3628	0.87	+0.4
3,677,717	-		GFF3628	0.87	+0.8
3,677,731	-		GFF3628	0.89	-2.5
3,677,732	-		GFF3628	0.89	-2.2
3,677,742	-		GFF3628	0.90	-0.4
3,677,747	-				-1.5
3,677,764	+				-0.4
3,677,764	+				+0.2
3,677,764	+				+0.6
3,677,772	-				+0.2
3,677,772	-				-0.5
3,677,775	+				-0.7
3,677,785	+				-1.7
3,677,787	+				+0.5
3,677,798	+				-0.4
3,677,803	-				+0.6
3,677,803	-				-0.2
3,677,851	+				-0.2
3,677,853	+				-2.5
3,677,857	+				+0.1
3,677,858	+				+0.0
3,677,866	-				-0.6
3,677,893	-				-0.9
3,677,928	+				-1.2
3,677,928	+				-1.4
3,677,928	+				-1.5
3,677,935	-				-0.4
3,677,935	-				-0.7
3,677,936	-				+0.6
3,677,944	+				-1.2
3,677,950	+				-0.6
3,677,952	-				+0.9
3,677,952	-				+1.1
3,677,957	-				+0.0
3,677,958	-				-0.6
3,677,966	-				-0.4
3,677,973	-				+1.0
3,677,992	+				-0.7
3,678,005	+		GFF3629	0.10	+0.7
3,678,005	+		GFF3629	0.10	-3.0
3,678,005	+		GFF3629	0.10	-0.5
3,678,005	+		GFF3629	0.10	+1.4
3,678,013	-		GFF3629	0.11	-0.8
3,678,013	-		GFF3629	0.11	+0.9
3,678,013	-		GFF3629	0.11	-0.7
3,678,013	-		GFF3629	0.11	-1.4
3,678,013	-		GFF3629	0.11	-2.4
3,678,013	-		GFF3629	0.11	-0.7
3,678,064	-		GFF3629	0.15	-0.8
3,678,064	-		GFF3629	0.15	+0.4
3,678,064	-		GFF3629	0.15	+0.6
3,678,077	+		GFF3629	0.16	-0.1
3,678,077	+		GFF3629	0.16	-0.4
3,678,078	+		GFF3629	0.16	-2.3
3,678,079	+		GFF3629	0.16	-0.4
3,678,086	+		GFF3629	0.17	+0.5
3,678,086	-		GFF3629	0.17	-0.1
3,678,086	-		GFF3629	0.17	-0.5
3,678,086	-		GFF3629	0.17	-1.6
3,678,086	-		GFF3629	0.17	+0.5
3,678,101	+		GFF3629	0.18	-0.4
3,678,107	+		GFF3629	0.18	+0.7
3,678,142	-		GFF3629	0.21	-0.7
3,678,142	-		GFF3629	0.21	+0.0
3,678,186	-		GFF3629	0.24	-0.9
3,678,238	+		GFF3629	0.29	-0.5
3,678,245	+		GFF3629	0.29	+0.2
3,678,263	+		GFF3629	0.31	-0.6
3,678,278	+		GFF3629	0.32	+0.4
3,678,278	+		GFF3629	0.32	-0.2
3,678,278	+		GFF3629	0.32	-0.8
3,678,278	+		GFF3629	0.32	+0.2
3,678,284	-		GFF3629	0.32	-1.4
3,678,286	-		GFF3629	0.32	+0.6
3,678,286	-		GFF3629	0.32	+0.5
3,678,286	-		GFF3629	0.32	-0.5
3,678,286	-		GFF3629	0.32	+1.1
3,678,303	+		GFF3629	0.34	+1.2
3,678,309	-		GFF3629	0.34	-0.9
3,678,320	+		GFF3629	0.35	+0.2
3,678,320	-		GFF3629	0.35	+0.9
3,678,321	+		GFF3629	0.35	-1.5
3,678,333	+		GFF3629	0.36	-0.8
3,678,335	+		GFF3629	0.36	-1.2
3,678,371	+		GFF3629	0.39	+0.3
3,678,372	+		GFF3629	0.39	-1.4
3,678,372	+		GFF3629	0.39	+0.9
3,678,376	-		GFF3629	0.40	-1.0
3,678,380	-		GFF3629	0.40	-0.3
3,678,380	-		GFF3629	0.40	+0.1
3,678,382	+		GFF3629	0.40	-1.2
3,678,390	-		GFF3629	0.41	+1.4
3,678,404	-		GFF3629	0.42	-0.6
3,678,415	+		GFF3629	0.43	+1.0
3,678,415	+		GFF3629	0.43	-1.4
3,678,423	-		GFF3629	0.43	-0.6
3,678,423	-		GFF3629	0.43	-0.0
3,678,428	-		GFF3629	0.44	+0.1
3,678,442	+		GFF3629	0.45	-0.9
3,678,452	+		GFF3629	0.46	-1.1
3,678,460	-		GFF3629	0.46	-1.2
3,678,460	-		GFF3629	0.46	-0.5
3,678,460	-		GFF3629	0.46	-0.0
3,678,469	+		GFF3629	0.47	+0.2
3,678,477	-		GFF3629	0.48	-1.6
3,678,481	+		GFF3629	0.48	-0.4
3,678,481	+		GFF3629	0.48	-0.7
3,678,481	+		GFF3629	0.48	-1.8
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