Strain Fitness in Sphingobium sp. HT1-2 around GFF3590

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,632,102	+				+0.1
3,632,107	-				-0.5
3,632,114	+				-1.8
3,632,125	-				+1.0
3,632,129	+				-0.8
3,632,133	-				-0.6
3,632,140	+				-1.5
3,632,144	+				-2.4
3,632,144	+				-0.4
3,632,144	+				-0.8
3,632,159	+				-0.1
3,632,164	+				-1.8
3,632,164	+				-0.0
3,632,172	-				+0.2
3,632,191	+				+0.9
3,632,199	-				-0.8
3,632,203	+				-1.7
3,632,214	+				-0.4
3,632,216	+				-1.4
3,632,216	+				-1.5
3,632,216	+				+1.7
3,632,216	+				-0.5
3,632,222	-				+0.9
3,632,223	+				-0.4
3,632,224	-				+0.2
3,632,224	-				-1.7
3,632,224	-				-0.8
3,632,224	-				+0.1
3,632,224	-				+0.4
3,632,224	-				-0.5
3,632,224	-				+0.4
3,632,228	+				-2.3
3,632,235	+				-0.4
3,632,235	+				-2.7
3,632,235	+				-2.5
3,632,243	-				+0.3
3,632,243	-				+0.5
3,632,243	-				-0.8
3,632,290	+				-0.9
3,632,290	+				+0.1
3,632,290	+				-1.8
3,632,290	+				+0.1
3,632,290	+				-1.2
3,632,290	+				-1.5
3,632,298	-				+1.3
3,632,298	-				+0.5
3,632,298	-				+0.6
3,632,298	-				-0.5
3,632,298	-				-0.9
3,632,298	-				-0.2
3,632,298	-				+1.3
3,632,340	-				+0.9
3,632,341	-				+0.5
3,632,341	-				+0.8
3,632,345	+				-0.9
3,632,345	+				+0.1
3,632,352	-				+1.1
3,632,353	-				+0.3
3,632,353	-				-1.5
3,632,464	+				-0.6
3,632,472	-				+0.6
3,632,482	-				-0.2
3,632,486	+				-0.5
3,632,486	+				+0.2
3,632,492	-		GFF3588	0.10	+1.4
3,632,515	+		GFF3588	0.17	+1.4
3,632,525	+		GFF3588	0.20	+0.6
3,632,553	+		GFF3588	0.28	-1.1
3,632,579	+		GFF3588	0.36	-0.8
3,632,593	+		GFF3588	0.40	+1.1
3,632,598	+		GFF3588	0.42	-0.7
3,632,598	+		GFF3588	0.42	+0.2
3,632,601	-		GFF3588	0.42	+1.8
3,632,601	-		GFF3588	0.42	-1.9
3,632,603	+		GFF3588	0.43	+0.9
3,632,611	-		GFF3588	0.45	+0.2
3,632,615	+		GFF3588	0.47	-2.1
3,632,616	+		GFF3588	0.47	+0.9
3,632,623	-		GFF3588	0.49	-0.4
3,632,623	-		GFF3588	0.49	-1.6
3,632,623	-		GFF3588	0.49	+0.1
3,632,623	-		GFF3588	0.49	-0.7
3,632,624	-		GFF3588	0.49	-0.7
3,632,626	+		GFF3588	0.50	-3.2
3,632,634	-		GFF3588	0.52	+0.4
3,632,634	-		GFF3588	0.52	-0.9
3,632,637	+		GFF3588	0.53	+0.3
3,632,637	+		GFF3588	0.53	-0.3
3,632,642	+		GFF3588	0.55	-0.1
3,632,642	+		GFF3588	0.55	+0.0
3,632,645	-		GFF3588	0.55	-0.6
3,632,649	-		GFF3588	0.57	+1.5
3,632,655	-		GFF3588	0.58	+0.1
3,632,655	-		GFF3588	0.58	-0.8
3,632,657	-		GFF3588	0.59	-0.4
3,632,664	+		GFF3588	0.61	-1.1
3,632,672	+		GFF3588	0.63	-0.6
3,632,680	-		GFF3588	0.66	+0.4
3,632,703	-		GFF3588	0.73	+1.0
3,632,711	+		GFF3588	0.75	-0.9
3,632,718	+		GFF3588	0.77	+0.2
3,632,719	-		GFF3588	0.77	-1.7
3,632,726	+		GFF3588	0.79	-0.8
3,632,726	-		GFF3588	0.79	+0.1
3,632,735	+		GFF3588	0.82	-2.1
3,632,735	+		GFF3588	0.82	+1.1
3,632,743	-		GFF3588	0.84	+1.0
3,632,775	-				+0.2
3,632,775	-				-1.4
3,632,804	+				-0.9
3,632,809	-				-0.4
3,632,830	+				-0.5
3,632,830	+				+0.1
3,632,837	+		GFF3589	0.12	-1.2
3,632,837	+		GFF3589	0.12	-0.1
3,632,837	+		GFF3589	0.12	+0.6
3,632,837	+		GFF3589	0.12	+0.4
3,632,837	+		GFF3589	0.12	+0.9
3,632,837	+		GFF3589	0.12	+1.4
3,632,837	+		GFF3589	0.12	+0.6
3,632,843	-		GFF3589	0.14	-3.0
3,632,845	-		GFF3589	0.15	-0.9
3,632,845	-		GFF3589	0.15	+0.2
3,632,845	-		GFF3589	0.15	-0.1
3,632,845	-		GFF3589	0.15	-1.0
3,632,845	-		GFF3589	0.15	+0.5
3,632,845	-		GFF3589	0.15	-0.9
3,632,845	-		GFF3589	0.15	-0.2
3,632,845	-		GFF3589	0.15	+0.6
3,632,845	-		GFF3589	0.15	-0.5
3,632,855	+		GFF3589	0.19	-1.1
3,632,861	+		GFF3589	0.21	-2.0
3,632,882	+		GFF3589	0.29	-0.2
3,632,890	-		GFF3589	0.31	-1.9
3,632,898	+		GFF3589	0.34	+0.6
3,632,898	+		GFF3589	0.34	-0.2
3,632,898	+		GFF3589	0.34	+0.6
3,632,898	+		GFF3589	0.34	+0.9
3,632,898	+		GFF3589	0.34	+0.4
3,632,906	-		GFF3589	0.37	+1.2
3,632,906	-		GFF3589	0.37	-2.2
3,632,906	-		GFF3589	0.37	-1.0
3,632,906	-		GFF3589	0.37	-1.9
3,632,906	-		GFF3589	0.37	+0.1
3,632,906	-		GFF3589	0.37	-1.5
3,632,906	-		GFF3589	0.37	-0.5
3,632,906	-		GFF3589	0.37	-1.9
3,632,906	-		GFF3589	0.37	-1.2
3,632,906	-		GFF3589	0.37	+0.6
3,632,906	-		GFF3589	0.37	-0.4
3,632,908	+		GFF3589	0.38	+0.5
3,632,924	+		GFF3589	0.44	-0.7
3,632,941	+		GFF3589	0.50	-0.4
3,632,945	+		GFF3589	0.52	+0.1
3,632,952	+		GFF3589	0.54	+0.4
3,632,952	+		GFF3589	0.54	+1.2
3,632,953	-		GFF3589	0.55	-0.0
3,632,953	-		GFF3589	0.55	+0.3
3,632,954	-		GFF3589	0.55	+1.6
3,632,954	-		GFF3589	0.55	+0.0
3,632,954	-		GFF3589	0.55	-1.4
3,632,997	-		GFF3589	0.71	-1.5
3,633,011	+		GFF3589	0.76	+1.1
3,633,011	+		GFF3589	0.76	-0.4
3,633,011	+		GFF3589	0.76	+0.3
3,633,011	+		GFF3589	0.76	+0.3
3,633,011	+		GFF3589	0.76	+0.5
3,633,016	+		GFF3589	0.78	+0.8
3,633,018	+		GFF3589	0.79	+1.1
3,633,019	-		GFF3589	0.79	-0.1
3,633,019	-		GFF3589	0.79	-0.2
3,633,019	-		GFF3589	0.79	+0.3
3,633,019	-		GFF3589	0.79	-0.0
3,633,019	-		GFF3589	0.79	+1.0
3,633,019	-		GFF3589	0.79	-0.4
3,633,019	-		GFF3589	0.79	+0.6
3,633,089	-				-0.9
3,633,101	+				-1.4
3,633,103	+				+1.3
3,633,106	+				-0.8
3,633,111	+				-1.6
3,633,111	+				-0.2
3,633,116	+				-0.0
3,633,119	-				+0.1
3,633,119	-				+0.6
3,633,119	-				-1.2
3,633,145	-				-0.9
3,633,154	-				-0.8
3,633,164	+				-0.6
3,633,164	+				-0.4
3,633,164	+				-0.4
3,633,169	+				-1.9
3,633,169	+				+0.5
3,633,169	+				-1.2
3,633,169	+				-2.2
3,633,169	+				-0.8
3,633,169	+				-1.3
3,633,169	+				-0.5
3,633,169	+				+1.3
3,633,169	+				-0.5
3,633,169	+				-0.7
3,633,169	+				-0.9
3,633,169	+				-1.7
3,633,169	+				+1.4
3,633,169	+				-0.5
3,633,169	+				+0.9
3,633,169	+				+0.1
3,633,169	+				+1.0
3,633,169	+				+1.2
3,633,169	+				-1.8
3,633,169	+				-0.2
3,633,169	+				-0.4
3,633,169	+				+0.0
3,633,169	+				-0.7
3,633,169	+				+0.0
3,633,169	+				+0.6
3,633,169	+				-0.0
3,633,172	-				+1.1
3,633,177	-				+0.3
3,633,177	-				+0.3
3,633,177	-				+0.6
3,633,177	-				-0.4
3,633,177	-				-0.7
3,633,177	-				-2.7
3,633,177	-				-0.9
3,633,177	-				-1.8
3,633,177	-				-0.7
3,633,177	-				+0.7
3,633,177	-				-1.7
3,633,177	-				-1.8
3,633,177	-				+1.3
3,633,177	-				-1.6
3,633,177	-				-0.3
3,633,177	-				-0.0
3,633,177	-				-0.6
3,633,177	-				+0.3
3,633,177	-				+0.8
3,633,177	-				+0.4
3,633,177	-				+0.4
3,633,177	-				-1.4
3,633,177	-				+0.1
3,633,177	-				+0.0
3,633,182	+				-0.4
3,633,182	+				-0.4
3,633,182	+				-1.4
3,633,214	+		GFF3590	0.12	+1.2
3,633,222	-		GFF3590	0.13	+0.5
3,633,224	+		GFF3590	0.14	-2.1
3,633,224	+		GFF3590	0.14	-0.9
3,633,224	+		GFF3590	0.14	+0.6
3,633,229	+		GFF3590	0.14	+0.4
3,633,232	-		GFF3590	0.14	-2.6
3,633,232	-		GFF3590	0.14	-1.0
3,633,232	-		GFF3590	0.14	+1.1
3,633,232	-		GFF3590	0.14	-2.5
3,633,232	-		GFF3590	0.14	-1.5
3,633,237	-		GFF3590	0.15	-0.6
3,633,237	-		GFF3590	0.15	-0.1
3,633,239	+		GFF3590	0.15	+1.6
3,633,239	+		GFF3590	0.15	+0.5
3,633,247	-		GFF3590	0.16	+0.1
3,633,247	-		GFF3590	0.16	+0.0
3,633,251	-		GFF3590	0.16	-0.3
3,633,264	-		GFF3590	0.18	-0.5
3,633,270	+		GFF3590	0.18	+0.8
3,633,270	+		GFF3590	0.18	-0.9
3,633,271	+		GFF3590	0.18	+0.7
3,633,275	+		GFF3590	0.19	+0.6
3,633,278	+		GFF3590	0.19	-1.6
3,633,278	-		GFF3590	0.19	-0.7
3,633,279	-		GFF3590	0.19	+0.4
3,633,279	-		GFF3590	0.19	-1.6
3,633,286	-		GFF3590	0.20	+0.7
3,633,295	+		GFF3590	0.21	+2.0
3,633,332	-		GFF3590	0.24	+0.2
3,633,345	+		GFF3590	0.26	+1.3
3,633,345	+		GFF3590	0.26	-1.9
3,633,353	-		GFF3590	0.27	+0.2
3,633,365	+		GFF3590	0.28	-0.0
3,633,365	+		GFF3590	0.28	-0.4
3,633,372	+		GFF3590	0.29	-1.2
3,633,373	-		GFF3590	0.29	-1.6
3,633,404	-		GFF3590	0.32	+0.8
3,633,408	+		GFF3590	0.32	+0.6
3,633,415	+		GFF3590	0.33	-1.2
3,633,416	-		GFF3590	0.33	-2.4
3,633,417	+		GFF3590	0.33	-1.1
3,633,417	+		GFF3590	0.33	-1.4
3,633,424	+		GFF3590	0.34	+0.1
3,633,432	+		GFF3590	0.35	-1.1
3,633,435	-		GFF3590	0.35	-0.4
3,633,440	-		GFF3590	0.35	-0.5
3,633,445	-		GFF3590	0.36	+1.2
3,633,467	+		GFF3590	0.38	-0.0
3,633,470	-		GFF3590	0.39	-0.4
3,633,470	-		GFF3590	0.39	-0.6
3,633,470	-		GFF3590	0.39	-1.7
3,633,518	-		GFF3590	0.43	+0.6
3,633,518	-		GFF3590	0.43	-0.2
3,633,518	-		GFF3590	0.43	-0.8
3,633,520	+		GFF3590	0.44	-0.7
3,633,528	-		GFF3590	0.44	+0.5
3,633,533	+		GFF3590	0.45	-1.4
3,633,549	+		GFF3590	0.47	+1.0
3,633,569	+		GFF3590	0.49	-0.7
3,633,569	+		GFF3590	0.49	+1.1
3,633,569	+		GFF3590	0.49	-1.0
3,633,569	+		GFF3590	0.49	-0.4
3,633,569	-		GFF3590	0.49	-2.1
3,633,573	+		GFF3590	0.49	-0.0
3,633,574	+		GFF3590	0.49	+0.3
3,633,577	-		GFF3590	0.49	-1.3
3,633,577	-		GFF3590	0.49	-1.5
3,633,577	-		GFF3590	0.49	+0.3
3,633,577	-		GFF3590	0.49	+0.2
3,633,582	+		GFF3590	0.50	-1.3
3,633,582	+		GFF3590	0.50	+0.9
3,633,582	-		GFF3590	0.50	-0.9
3,633,582	-		GFF3590	0.50	-0.1
3,633,587	-		GFF3590	0.50	-1.2
3,633,589	-		GFF3590	0.51	-0.3
3,633,590	+		GFF3590	0.51	-1.5
3,633,624	-		GFF3590	0.54	+0.3
3,633,625	+		GFF3590	0.54	+0.4
3,633,625	+		GFF3590	0.54	-0.3
3,633,625	+		GFF3590	0.54	-0.3
3,633,654	+		GFF3590	0.57	+1.8
3,633,654	+		GFF3590	0.57	-2.4
3,633,660	+		GFF3590	0.58	-0.0
3,633,666	-		GFF3590	0.58	+0.8
3,633,667	+		GFF3590	0.59	-2.2
3,633,670	+		GFF3590	0.59	-0.2
3,633,692	-		GFF3590	0.61	-0.6
3,633,702	-		GFF3590	0.62	-1.2
3,633,703	-		GFF3590	0.62	+0.2
3,633,703	-		GFF3590	0.62	+0.0
3,633,704	+		GFF3590	0.62	+0.7
3,633,707	+		GFF3590	0.63	+0.3
3,633,717	+		GFF3590	0.64	-0.2
3,633,722	-		GFF3590	0.64	+1.1
3,633,722	-		GFF3590	0.64	+1.6
3,633,733	+		GFF3590	0.65	-0.0
3,633,733	+		GFF3590	0.65	-0.0
3,633,741	-		GFF3590	0.66	+1.2
3,633,741	-		GFF3590	0.66	+1.0
3,633,741	-		GFF3590	0.66	-2.2
3,633,747	+		GFF3590	0.67	-2.2
3,633,756	+		GFF3590	0.68	-2.7
3,633,756	+		GFF3590	0.68	-1.8
3,633,767	+		GFF3590	0.69	-0.7
3,633,767	+		GFF3590	0.69	-1.4
3,633,767	+		GFF3590	0.69	-1.2
3,633,767	+		GFF3590	0.69	+0.6
3,633,769	-		GFF3590	0.69	+0.3
3,633,775	-		GFF3590	0.70	-1.1
3,633,775	-		GFF3590	0.70	+0.2
3,633,775	-		GFF3590	0.70	+0.6
3,633,775	-		GFF3590	0.70	-0.5
3,633,775	-		GFF3590	0.70	-0.5
3,633,788	+		GFF3590	0.71	-0.3
3,633,788	+		GFF3590	0.71	-2.5
3,633,791	+		GFF3590	0.71	-0.3
3,633,803	-		GFF3590	0.72	+0.3
3,633,814	-		GFF3590	0.73	-0.5
3,633,828	+		GFF3590	0.75	-0.4
3,633,828	-		GFF3590	0.75	-1.8
3,633,830	+		GFF3590	0.75	-1.2
3,633,836	+		GFF3590	0.76	+0.8
3,633,844	-		GFF3590	0.77	-1.6
3,633,852	+		GFF3590	0.77	-1.5
3,633,852	+		GFF3590	0.77	-0.1
3,633,852	+		GFF3590	0.77	+0.5
3,633,852	+		GFF3590	0.77	-2.1
3,633,852	+		GFF3590	0.77	-1.9
3,633,852	+		GFF3590	0.77	-1.2
3,633,857	+		GFF3590	0.78	-1.7
3,633,857	+		GFF3590	0.78	+0.2
3,633,857	+		GFF3590	0.78	+0.4
3,633,857	+		GFF3590	0.78	-1.2
3,633,857	+		GFF3590	0.78	-1.7
3,633,857	+		GFF3590	0.78	-0.8
3,633,857	+		GFF3590	0.78	-0.2
3,633,860	-		GFF3590	0.78	+0.2
3,633,860	-		GFF3590	0.78	-0.0
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3,633,865	-		GFF3590	0.79	-1.1
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3,633,995	+				-0.9
3,634,003	-				+0.1
3,634,003	-				-1.1
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3,634,018	-				-1.9
3,634,018	-				+0.8
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