Strain Fitness in Sphingobium sp. HT1-2 around GFF3542

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,588,672	+		GFF3540	0.82	-1.7
3,588,675	-		GFF3540	0.82	-0.6
3,588,675	-		GFF3540	0.82	+0.8
3,588,675	-		GFF3540	0.82	+1.0
3,588,680	-		GFF3540	0.83	+2.1
3,588,685	-		GFF3540	0.83	-2.0
3,588,761	+		GFF3540	0.90	+1.0
3,588,761	+		GFF3540	0.90	+0.8
3,588,761	+		GFF3540	0.90	+1.2
3,588,761	+		GFF3540	0.90	-1.6
3,588,761	+		GFF3540	0.90	-1.1
3,588,761	+		GFF3540	0.90	+1.1
3,588,761	+		GFF3540	0.90	+0.5
3,588,763	+		GFF3540	0.90	-1.8
3,588,763	+		GFF3540	0.90	-0.7
3,588,763	+		GFF3540	0.90	-0.6
3,588,763	+		GFF3540	0.90	-1.3
3,588,763	+		GFF3540	0.90	+0.7
3,588,763	+		GFF3540	0.90	-1.1
3,588,763	+		GFF3540	0.90	-1.6
3,588,763	+		GFF3540	0.90	-0.1
3,588,763	+		GFF3540	0.90	+1.6
3,588,763	+		GFF3540	0.90	+0.6
3,588,763	+		GFF3540	0.90	+0.9
3,588,763	+		GFF3540	0.90	-0.7
3,588,766	+				-0.8
3,588,768	+				+1.2
3,588,769	-				-0.2
3,588,769	-				-0.7
3,588,769	-				-0.3
3,588,769	-				+0.3
3,588,769	-				+0.0
3,588,769	-				-1.3
3,588,769	-				+0.2
3,588,771	-				-0.3
3,588,771	-				-1.1
3,588,771	-				-0.0
3,588,771	-				-0.8
3,588,771	-				+1.0
3,588,771	-				+0.8
3,588,771	-				+0.2
3,588,771	-				+0.4
3,588,788	+				+0.4
3,588,798	+				-0.4
3,588,814	-				-0.2
3,588,864	-				+1.6
3,588,902	+				-0.3
3,588,902	+				-0.1
3,588,909	+				+0.2
3,588,909	-				+0.8
3,588,909	-				+0.8
3,588,910	-				+0.4
3,588,910	-				+0.7
3,588,918	-				-1.5
3,589,166	+		GFF3541	0.29	-0.1
3,589,168	+		GFF3541	0.29	-0.7
3,589,182	+		GFF3541	0.31	+0.7
3,589,236	+		GFF3541	0.39	+0.6
3,589,395	+		GFF3541	0.63	+0.5
3,589,434	+		GFF3541	0.68	-2.6
3,589,472	+		GFF3541	0.74	-0.2
3,589,472	+		GFF3541	0.74	+0.3
3,589,472	+		GFF3541	0.74	+0.3
3,589,482	+		GFF3541	0.75	+0.4
3,589,601	+				+0.4
3,589,612	+				-0.7
3,589,638	-				-0.8
3,589,645	-				+0.2
3,589,647	-				-1.2
3,589,655	+				+0.4
3,589,663	-				-1.8
3,589,676	+				+0.3
3,589,676	+				-0.8
3,589,676	+				+0.5
3,589,676	+				-0.4
3,589,676	+				-0.5
3,589,676	+				+0.7
3,589,676	+				-0.2
3,589,676	+				-0.5
3,589,676	+				-2.4
3,589,676	+				+0.2
3,589,684	-				-2.0
3,589,684	-				-1.3
3,589,684	-				+0.2
3,589,684	-				+0.0
3,589,684	-				+1.0
3,589,701	+				+0.3
3,589,708	+				-0.6
3,589,708	+				-0.4
3,589,709	+				-2.3
3,589,716	-				+0.4
3,589,716	-				-0.1
3,589,717	-				+0.1
3,589,717	-				-0.4
3,589,799	+		GFF3542	0.14	-1.6
3,589,799	+		GFF3542	0.14	+0.6
3,589,799	+		GFF3542	0.14	-0.8
3,589,807	-		GFF3542	0.15	-0.4
3,589,807	-		GFF3542	0.15	-1.8
3,589,807	-		GFF3542	0.15	-0.8
3,589,807	-		GFF3542	0.15	-0.5
3,589,807	-		GFF3542	0.15	+0.2
3,589,807	-		GFF3542	0.15	-0.3
3,589,807	-		GFF3542	0.15	+1.7
3,589,809	+		GFF3542	0.15	+1.0
3,589,812	-		GFF3542	0.15	-0.4
3,589,812	-		GFF3542	0.15	-0.6
3,589,812	-		GFF3542	0.15	-1.4
3,589,841	+		GFF3542	0.18	-1.3
3,589,841	+		GFF3542	0.18	-0.6
3,589,846	+		GFF3542	0.18	-2.3
3,589,846	+		GFF3542	0.18	-0.2
3,589,854	-		GFF3542	0.19	-1.5
3,589,860	-		GFF3542	0.19	+0.7
3,589,862	+		GFF3542	0.20	+0.9
3,589,875	-		GFF3542	0.21	+0.1
3,589,904	-		GFF3542	0.23	-1.0
3,589,906	+		GFF3542	0.23	+1.3
3,589,916	+		GFF3542	0.24	-1.0
3,589,918	-		GFF3542	0.24	-1.6
3,589,926	+		GFF3542	0.25	+0.3
3,589,939	+		GFF3542	0.26	-1.6
3,589,944	+		GFF3542	0.27	+0.2
3,589,944	+		GFF3542	0.27	-0.0
3,589,954	-		GFF3542	0.28	-1.7
3,589,980	+		GFF3542	0.30	-0.4
3,589,988	-		GFF3542	0.31	-1.3
3,589,993	+		GFF3542	0.31	+1.0
3,589,993	+		GFF3542	0.31	-0.6
3,589,993	+		GFF3542	0.31	+0.6
3,590,000	-		GFF3542	0.32	-1.0
3,590,001	-		GFF3542	0.32	+0.0
3,590,011	+		GFF3542	0.33	-0.3
3,590,025	+		GFF3542	0.34	+0.8
3,590,028	+		GFF3542	0.34	-0.7
3,590,042	+		GFF3542	0.35	-0.6
3,590,045	+		GFF3542	0.36	-0.1
3,590,050	+		GFF3542	0.36	+0.6
3,590,050	-		GFF3542	0.36	-0.3
3,590,055	+		GFF3542	0.36	-0.1
3,590,057	+		GFF3542	0.37	+1.1
3,590,072	+		GFF3542	0.38	-1.2
3,590,080	-		GFF3542	0.39	+0.4
3,590,092	-		GFF3542	0.40	-2.1
3,590,138	+		GFF3542	0.44	+1.4
3,590,138	+		GFF3542	0.44	+0.5
3,590,163	+		GFF3542	0.46	+0.9
3,590,163	+		GFF3542	0.46	-1.4
3,590,163	+		GFF3542	0.46	-1.3
3,590,169	+		GFF3542	0.46	+1.1
3,590,169	+		GFF3542	0.46	-0.3
3,590,169	+		GFF3542	0.46	-1.8
3,590,169	+		GFF3542	0.46	-0.5
3,590,169	+		GFF3542	0.46	+0.0
3,590,169	+		GFF3542	0.46	-0.7
3,590,169	+		GFF3542	0.46	+0.8
3,590,171	-		GFF3542	0.47	+1.2
3,590,171	-		GFF3542	0.47	+0.3
3,590,171	-		GFF3542	0.47	-1.3
3,590,171	-		GFF3542	0.47	-2.9
3,590,171	-		GFF3542	0.47	-0.4
3,590,171	-		GFF3542	0.47	+0.2
3,590,172	-		GFF3542	0.47	-1.2
3,590,177	-		GFF3542	0.47	-1.1
3,590,177	-		GFF3542	0.47	-1.7
3,590,177	-		GFF3542	0.47	+1.2
3,590,177	-		GFF3542	0.47	+1.6
3,590,177	-		GFF3542	0.47	-1.5
3,590,177	-		GFF3542	0.47	-1.1
3,590,177	-		GFF3542	0.47	-0.2
3,590,191	+		GFF3542	0.48	-1.6
3,590,213	+		GFF3542	0.50	-1.3
3,590,213	+		GFF3542	0.50	+0.9
3,590,213	+		GFF3542	0.50	-0.1
3,590,213	+		GFF3542	0.50	-0.6
3,590,214	-		GFF3542	0.50	-2.7
3,590,214	-		GFF3542	0.50	-0.3
3,590,221	-		GFF3542	0.51	-0.2
3,590,228	+		GFF3542	0.52	-0.1
3,590,228	+		GFF3542	0.52	-0.1
3,590,236	-		GFF3542	0.52	-0.6
3,590,248	-		GFF3542	0.53	+1.2
3,590,303	+		GFF3542	0.58	-1.3
3,590,303	+		GFF3542	0.58	-2.6
3,590,303	+		GFF3542	0.58	-0.5
3,590,309	-		GFF3542	0.59	-0.8
3,590,309	-		GFF3542	0.59	-0.9
3,590,311	-		GFF3542	0.59	-0.4
3,590,311	-		GFF3542	0.59	-0.3
3,590,311	-		GFF3542	0.59	-1.8
3,590,311	-		GFF3542	0.59	-0.3
3,590,327	+		GFF3542	0.60	-0.4
3,590,330	-		GFF3542	0.60	-1.5
3,590,364	+		GFF3542	0.63	-1.9
3,590,364	+		GFF3542	0.63	+0.0
3,590,364	+		GFF3542	0.63	-2.7
3,590,371	+		GFF3542	0.64	-0.2
3,590,372	-		GFF3542	0.64	+0.7
3,590,372	-		GFF3542	0.64	+0.3
3,590,372	-		GFF3542	0.64	+0.8
3,590,372	-		GFF3542	0.64	-0.1
3,590,372	-		GFF3542	0.64	-0.1
3,590,372	-		GFF3542	0.64	-0.6
3,590,379	-		GFF3542	0.65	-0.2
3,590,385	+		GFF3542	0.65	+1.5
3,590,408	+		GFF3542	0.67	-1.3
3,590,415	-		GFF3542	0.68	+0.6
3,590,423	+		GFF3542	0.69	-0.9
3,590,429	+		GFF3542	0.69	+0.7
3,590,429	+		GFF3542	0.69	+2.0
3,590,437	-		GFF3542	0.70	-3.1
3,590,454	-		GFF3542	0.71	+0.4
3,590,454	-		GFF3542	0.71	+1.8
3,590,454	-		GFF3542	0.71	+0.1
3,590,459	-		GFF3542	0.72	-0.0
3,590,504	-		GFF3542	0.76	-1.3
3,590,508	+		GFF3542	0.76	+0.4
3,590,508	+		GFF3542	0.76	-1.3
3,590,520	+		GFF3542	0.77	+0.2
3,590,526	+		GFF3542	0.78	-0.1
3,590,551	-		GFF3542	0.80	-0.2
3,590,551	-		GFF3542	0.80	-2.3
3,590,551	-		GFF3542	0.80	-0.5
3,590,552	+		GFF3542	0.80	+1.2
3,590,553	+		GFF3542	0.80	+1.0
3,590,553	+		GFF3542	0.80	+1.0
3,590,553	+		GFF3542	0.80	+0.4
3,590,553	+		GFF3542	0.80	-0.4
3,590,553	+		GFF3542	0.80	+0.7
3,590,553	+		GFF3542	0.80	+1.0
3,590,558	+		GFF3542	0.80	+0.0
3,590,558	+		GFF3542	0.80	-2.4
3,590,558	+		GFF3542	0.80	-0.8
3,590,561	-		GFF3542	0.81	+0.3
3,590,561	-		GFF3542	0.81	+0.1
3,590,561	-		GFF3542	0.81	-0.3
3,590,561	-		GFF3542	0.81	-0.1
3,590,562	-		GFF3542	0.81	+1.2
3,590,566	-		GFF3542	0.81	-2.3
3,590,573	+		GFF3542	0.82	-1.3
3,590,582	+		GFF3542	0.83	-0.6
3,590,590	-		GFF3542	0.83	-0.9
3,590,590	-		GFF3542	0.83	-1.7
3,590,597	+		GFF3542	0.84	+0.7
3,590,646	-		GFF3542	0.88	+0.8
3,590,656	+		GFF3542	0.89	+0.9
3,590,669	+				-0.5
3,590,671	+				-1.8
3,590,672	-				+0.8
3,590,677	-				-0.1
3,590,677	-				+0.3
3,590,681	+				+0.0
3,590,709	+				+0.9
3,590,709	+				-0.7
3,590,709	+				+2.5
3,590,709	+				-1.2
3,590,709	+				-1.6
3,590,709	+				+0.4
3,590,709	+				-1.3
3,590,709	+				-0.6
3,590,709	+				-1.1
3,590,709	+				-0.3
3,590,709	+				-1.5
3,590,709	+				+1.9
3,590,709	+				+0.1
3,590,709	+				-0.5
3,590,709	+				+1.4
3,590,709	+				+1.3
3,590,709	+				-2.0
3,590,709	+				-1.8
3,590,709	+				+0.1
3,590,709	+				-0.3
3,590,709	+				-0.2
3,590,709	+				-1.9
3,590,709	+				+0.2
3,590,717	-				-0.3
3,590,717	-				-0.3
3,590,717	-				+1.1
3,590,717	-				+1.5
3,590,717	-				+0.6
3,590,717	-				+0.1
3,590,717	-				-1.0
3,590,717	-				-2.0
3,590,717	-				-0.6
3,590,717	-				+0.7
3,590,717	-				+0.2
3,590,717	-				+0.6
3,590,717	-				+0.4
3,590,717	-				-0.9
3,590,717	-				+1.0
3,590,732	-				-0.2
3,590,736	+				+0.8
3,590,744	-				+0.5
3,590,746	+				+1.2
3,590,749	-				-1.4
3,590,768	+				-0.9
3,590,773	+				-1.7
3,590,776	-				-1.2
3,590,783	+				-0.8
3,590,783	+				-0.3
3,590,790	+				+0.5
3,590,809	+				+0.8
3,590,817	+				+0.8
3,590,827	+				+0.3
3,590,828	+				-0.1
3,590,833	+				-2.1
3,590,835	-				+0.4
3,590,835	-				+0.2
3,590,837	+				+0.3
3,590,847	+				-0.8
3,590,847	+				+0.8
3,590,849	+				-1.0
3,590,854	+				-1.0
3,590,855	-				+0.3
3,590,859	+				+0.7
3,590,862	-				-2.5
3,590,862	-				+0.1
3,590,867	-				-2.3
3,590,867	-				-0.5
3,590,905	+				-1.8
3,590,906	-				+0.5
3,590,912	-				-0.7
3,590,913	-				+0.1
3,590,913	-				-1.7
3,590,931	+				-0.9
3,590,938	-				+1.4
3,590,942	+				+1.2
3,590,942	+				+0.0
3,590,942	+				-0.5
3,590,950	-				+1.5
3,590,950	-				+1.7
3,590,959	+				+0.1
3,590,967	+				-1.1
3,590,977	+				-0.4
3,590,984	+				+0.4
3,590,984	+				+1.0
3,590,984	+				+1.1
3,590,992	-				-0.9
3,590,992	-				-1.0
3,590,992	-				+0.5
3,590,992	-				-0.2
3,590,998	+				+0.5
3,591,002	-				-1.0
3,591,006	-				-2.3
3,591,068	+		GFF3543	0.12	+0.9
3,591,068	+		GFF3543	0.12	+0.4
3,591,068	+		GFF3543	0.12	-0.1
3,591,068	+		GFF3543	0.12	-0.1
3,591,068	+		GFF3543	0.12	-0.6
3,591,068	+		GFF3543	0.12	-0.2
3,591,073	-		GFF3543	0.12	+0.6
3,591,076	-		GFF3543	0.12	-1.7
3,591,084	+		GFF3543	0.13	-0.9
3,591,084	+		GFF3543	0.13	+0.5
3,591,084	+		GFF3543	0.13	+0.3
3,591,092	-		GFF3543	0.13	-0.4
3,591,092	-		GFF3543	0.13	-0.1
3,591,094	+		GFF3543	0.13	+0.5
3,591,107	+		GFF3543	0.14	-0.4
3,591,107	-		GFF3543	0.14	-0.3
3,591,115	-		GFF3543	0.15	+0.3
3,591,126	+		GFF3543	0.15	-0.2
3,591,131	+		GFF3543	0.15	-1.7
3,591,133	+		GFF3543	0.16	-1.5
3,591,133	+		GFF3543	0.16	+0.3
3,591,139	+		GFF3543	0.16	+0.5
3,591,141	-		GFF3543	0.16	-1.2
3,591,141	-		GFF3543	0.16	-0.9
3,591,151	+		GFF3543	0.17	-0.2
3,591,159	-		GFF3543	0.17	+1.2
3,591,159	-		GFF3543	0.17	-0.2
3,591,159	-		GFF3543	0.17	-1.5
3,591,159	-		GFF3543	0.17	-0.7
3,591,183	+		GFF3543	0.18	-1.4
3,591,192	+		GFF3543	0.19	+1.0
3,591,192	-		GFF3543	0.19	-1.2
3,591,203	+		GFF3543	0.20	-0.0
3,591,208	+		GFF3543	0.20	-0.3
3,591,212	+		GFF3543	0.20	-1.0
3,591,220	-		GFF3543	0.21	-0.2
3,591,250	-		GFF3543	0.22	-0.8
3,591,255	+		GFF3543	0.22	+0.2
3,591,272	+		GFF3543	0.23	+0.3
3,591,272	+		GFF3543	0.23	+1.3
3,591,272	-		GFF3543	0.23	-1.5
3,591,277	+		GFF3543	0.24	-0.7
3,591,280	-		GFF3543	0.24	+1.2
3,591,280	-		GFF3543	0.24	-1.9
3,591,315	+		GFF3543	0.26	-1.5
3,591,330	+		GFF3543	0.27	+1.7
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