Strain Fitness in Sphingobium sp. HT1-2 around GFF3508

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,547,042	-				-0.3
3,547,046	+				+0.6
3,547,070	+				-1.5
3,547,108	-				-1.3
3,547,124	+				+0.8
3,547,143	+				-2.5
3,547,166	-		GFF3507	0.12	+0.4
3,547,188	-		GFF3507	0.15	-1.1
3,547,188	-		GFF3507	0.15	-0.1
3,547,188	-		GFF3507	0.15	+0.1
3,547,190	+		GFF3507	0.15	+0.0
3,547,192	+		GFF3507	0.16	-0.3
3,547,192	+		GFF3507	0.16	-0.3
3,547,192	+		GFF3507	0.16	+1.0
3,547,192	+		GFF3507	0.16	-2.0
3,547,200	-		GFF3507	0.17	-1.5
3,547,200	-		GFF3507	0.17	-1.3
3,547,203	-		GFF3507	0.17	-0.3
3,547,224	-		GFF3507	0.20	-0.9
3,547,236	+		GFF3507	0.22	-1.2
3,547,270	+		GFF3507	0.27	+0.5
3,547,277	-		GFF3507	0.28	-2.0
3,547,286	+		GFF3507	0.29	+0.3
3,547,286	+		GFF3507	0.29	+0.1
3,547,286	+		GFF3507	0.29	-0.7
3,547,286	+		GFF3507	0.29	-0.9
3,547,293	+		GFF3507	0.30	+0.5
3,547,294	-		GFF3507	0.30	+0.2
3,547,299	-		GFF3507	0.31	+0.2
3,547,305	+		GFF3507	0.32	-0.9
3,547,313	-		GFF3507	0.33	+0.1
3,547,313	-		GFF3507	0.33	-0.8
3,547,313	-		GFF3507	0.33	+0.7
3,547,338	+		GFF3507	0.36	-0.7
3,547,338	+		GFF3507	0.36	+0.1
3,547,347	-		GFF3507	0.38	-2.0
3,547,367	+		GFF3507	0.40	+0.8
3,547,372	+		GFF3507	0.41	-0.4
3,547,372	+		GFF3507	0.41	+0.0
3,547,386	+		GFF3507	0.43	+1.1
3,547,406	+		GFF3507	0.46	+1.1
3,547,417	-		GFF3507	0.48	-1.8
3,547,428	+		GFF3507	0.49	+0.1
3,547,428	+		GFF3507	0.49	-0.9
3,547,428	+		GFF3507	0.49	-0.1
3,547,428	+		GFF3507	0.49	-0.2
3,547,441	-		GFF3507	0.51	-1.9
3,547,448	+		GFF3507	0.52	-1.4
3,547,448	+		GFF3507	0.52	-0.5
3,547,451	-		GFF3507	0.52	-1.1
3,547,456	-		GFF3507	0.53	-2.8
3,547,476	+		GFF3507	0.56	-2.1
3,547,476	+		GFF3507	0.56	+0.4
3,547,493	+		GFF3507	0.58	+0.8
3,547,498	+		GFF3507	0.59	-0.0
3,547,501	-		GFF3507	0.59	-0.8
3,547,506	-		GFF3507	0.60	-0.1
3,547,522	-		GFF3507	0.62	-0.8
3,547,522	-		GFF3507	0.62	-1.9
3,547,558	-		GFF3507	0.68	-1.9
3,547,579	+		GFF3507	0.70	-1.6
3,547,583	+		GFF3507	0.71	+0.6
3,547,584	+		GFF3507	0.71	+1.0
3,547,586	-		GFF3507	0.71	+0.3
3,547,587	-		GFF3507	0.72	+0.3
3,547,588	+		GFF3507	0.72	-1.1
3,547,588	+		GFF3507	0.72	-0.6
3,547,588	+		GFF3507	0.72	+1.4
3,547,602	+		GFF3507	0.74	-1.4
3,547,603	+		GFF3507	0.74	-0.5
3,547,611	-		GFF3507	0.75	+1.4
3,547,612	+		GFF3507	0.75	+0.0
3,547,612	+		GFF3507	0.75	-0.8
3,547,612	+		GFF3507	0.75	-0.2
3,547,617	+		GFF3507	0.76	+0.3
3,547,625	-		GFF3507	0.77	-0.2
3,547,630	-		GFF3507	0.78	-0.9
3,547,643	+		GFF3507	0.80	+1.0
3,547,648	+		GFF3507	0.80	-0.0
3,547,648	+		GFF3507	0.80	+0.3
3,547,648	+		GFF3507	0.80	-0.5
3,547,656	-		GFF3507	0.81	-0.9
3,547,656	-		GFF3507	0.81	+0.3
3,547,656	-		GFF3507	0.81	+0.1
3,547,656	-		GFF3507	0.81	-0.2
3,547,656	-		GFF3507	0.81	+1.6
3,547,656	-		GFF3507	0.81	-0.3
3,547,656	-		GFF3507	0.81	-2.2
3,547,659	-		GFF3507	0.82	+0.4
3,547,689	+		GFF3507	0.86	-0.9
3,547,730	+				-0.4
3,547,735	+				+1.0
3,547,736	-				-0.1
3,547,736	-				+0.3
3,547,738	+				-1.0
3,547,738	+				+0.4
3,547,738	-				-1.3
3,547,744	+				-0.5
3,547,752	-				-0.2
3,547,753	+				+0.5
3,547,758	-				+0.9
3,547,774	+				-1.3
3,547,774	+				-0.3
3,547,828	-				-0.1
3,547,833	-				-2.2
3,547,854	-				+0.6
3,547,855	+				-0.5
3,547,855	+				-1.0
3,547,884	-				-2.2
3,547,886	+				-0.9
3,547,886	+				-1.7
3,547,886	+				-2.0
3,547,886	+				-1.3
3,547,886	+				+0.7
3,547,894	-				-0.7
3,547,894	-				-0.3
3,547,928	-				-1.6
3,547,928	-				+0.1
3,547,930	+				-0.9
3,547,930	+				+0.8
3,547,932	+				-0.6
3,547,932	+				-1.3
3,547,932	+				-2.3
3,547,932	+				-0.2
3,547,932	+				-0.5
3,547,932	+				+0.2
3,547,932	+				+1.4
3,547,941	+				-0.3
3,547,958	+				-0.7
3,547,964	+				+0.0
3,547,982	+				-1.5
3,547,982	+				-1.6
3,547,990	-				-3.4
3,547,990	-				-1.0
3,547,997	+				-0.2
3,548,033	+				-1.0
3,548,035	+				-2.0
3,548,039	-				+0.6
3,548,044	-				-0.6
3,548,047	+				+1.6
3,548,060	-				-2.4
3,548,060	-				-0.3
3,548,075	+				-1.4
3,548,077	+				-1.8
3,548,087	+				-0.7
3,548,095	-				+0.3
3,548,097	+				-1.0
3,548,102	+				-0.5
3,548,102	+				+0.4
3,548,110	-		GFF3508	0.10	+0.6
3,548,110	-		GFF3508	0.10	+0.9
3,548,118	+		GFF3508	0.11	-0.4
3,548,118	+		GFF3508	0.11	+0.9
3,548,123	+		GFF3508	0.12	+0.3
3,548,124	-		GFF3508	0.12	+0.9
3,548,124	-		GFF3508	0.12	-1.8
3,548,126	-		GFF3508	0.12	-0.2
3,548,126	-		GFF3508	0.12	-0.0
3,548,126	-		GFF3508	0.12	+0.1
3,548,126	-		GFF3508	0.12	-0.1
3,548,145	+		GFF3508	0.15	-0.4
3,548,179	+		GFF3508	0.20	-2.0
3,548,179	+		GFF3508	0.20	+0.3
3,548,181	+		GFF3508	0.20	-1.3
3,548,184	-		GFF3508	0.20	-0.6
3,548,186	+		GFF3508	0.20	-0.7
3,548,199	-		GFF3508	0.22	-2.9
3,548,199	-		GFF3508	0.22	-0.1
3,548,201	+		GFF3508	0.22	-0.7
3,548,206	+		GFF3508	0.23	+0.1
3,548,206	+		GFF3508	0.23	-2.0
3,548,206	+		GFF3508	0.23	+0.4
3,548,209	-		GFF3508	0.24	-0.5
3,548,214	-		GFF3508	0.24	-0.9
3,548,214	-		GFF3508	0.24	+0.3
3,548,214	-		GFF3508	0.24	-2.0
3,548,214	-		GFF3508	0.24	-0.6
3,548,214	-		GFF3508	0.24	-0.4
3,548,214	-		GFF3508	0.24	-1.2
3,548,214	-		GFF3508	0.24	-0.3
3,548,214	-		GFF3508	0.24	+1.1
3,548,230	+		GFF3508	0.26	+0.0
3,548,235	+		GFF3508	0.27	+0.2
3,548,240	+		GFF3508	0.28	-2.0
3,548,241	+		GFF3508	0.28	-0.2
3,548,243	-		GFF3508	0.28	-1.0
3,548,245	+		GFF3508	0.28	-0.3
3,548,245	+		GFF3508	0.28	-1.1
3,548,245	+		GFF3508	0.28	-1.0
3,548,248	-		GFF3508	0.29	+0.2
3,548,252	+		GFF3508	0.29	-0.3
3,548,253	-		GFF3508	0.29	+0.9
3,548,253	-		GFF3508	0.29	-0.3
3,548,254	-		GFF3508	0.30	+0.7
3,548,254	-		GFF3508	0.30	-1.4
3,548,254	-		GFF3508	0.30	+0.2
3,548,259	+		GFF3508	0.30	-0.3
3,548,274	+		GFF3508	0.32	-0.2
3,548,274	+		GFF3508	0.32	-0.7
3,548,282	-		GFF3508	0.33	-0.4
3,548,282	-		GFF3508	0.33	-1.4
3,548,299	+		GFF3508	0.36	-0.4
3,548,299	+		GFF3508	0.36	+1.6
3,548,299	+		GFF3508	0.36	-0.4
3,548,299	+		GFF3508	0.36	-0.0
3,548,299	+		GFF3508	0.36	-0.9
3,548,299	+		GFF3508	0.36	+0.3
3,548,299	+		GFF3508	0.36	-0.1
3,548,299	+		GFF3508	0.36	-1.8
3,548,299	+		GFF3508	0.36	+0.7
3,548,304	+		GFF3508	0.36	-1.9
3,548,307	-		GFF3508	0.37	-2.6
3,548,307	-		GFF3508	0.37	+0.4
3,548,307	-		GFF3508	0.37	-0.8
3,548,307	-		GFF3508	0.37	+0.5
3,548,307	-		GFF3508	0.37	+0.0
3,548,307	-		GFF3508	0.37	+0.9
3,548,322	+		GFF3508	0.39	+0.5
3,548,362	+		GFF3508	0.44	-0.2
3,548,362	+		GFF3508	0.44	+0.4
3,548,362	+		GFF3508	0.44	-1.4
3,548,362	+		GFF3508	0.44	-0.1
3,548,363	-		GFF3508	0.44	-0.8
3,548,365	-		GFF3508	0.44	-1.3
3,548,370	-		GFF3508	0.45	-1.2
3,548,370	-		GFF3508	0.45	-1.0
3,548,370	-		GFF3508	0.45	-0.8
3,548,370	-		GFF3508	0.45	-0.6
3,548,389	+		GFF3508	0.48	-1.4
3,548,389	+		GFF3508	0.48	+0.5
3,548,395	+		GFF3508	0.48	-0.0
3,548,396	+		GFF3508	0.49	-1.4
3,548,396	+		GFF3508	0.49	-2.2
3,548,419	+		GFF3508	0.52	-1.3
3,548,429	+		GFF3508	0.53	+0.4
3,548,429	+		GFF3508	0.53	+0.3
3,548,437	+		GFF3508	0.54	-0.5
3,548,452	-		GFF3508	0.56	+0.6
3,548,457	+		GFF3508	0.57	-0.7
3,548,459	+		GFF3508	0.57	-1.0
3,548,465	-		GFF3508	0.58	+0.4
3,548,465	-		GFF3508	0.58	+0.7
3,548,467	+		GFF3508	0.58	-3.5
3,548,475	-		GFF3508	0.59	-1.6
3,548,483	+		GFF3508	0.60	+0.8
3,548,490	-		GFF3508	0.61	-2.5
3,548,490	-		GFF3508	0.61	+1.2
3,548,491	-		GFF3508	0.61	-0.1
3,548,491	-		GFF3508	0.61	-0.6
3,548,494	+		GFF3508	0.62	-1.5
3,548,535	+		GFF3508	0.67	+0.7
3,548,539	-		GFF3508	0.68	+0.4
3,548,585	-		GFF3508	0.74	-0.5
3,548,592	+		GFF3508	0.75	-0.5
3,548,592	+		GFF3508	0.75	-1.5
3,548,596	+		GFF3508	0.75	-0.3
3,548,596	+		GFF3508	0.75	+0.0
3,548,596	+		GFF3508	0.75	+0.3
3,548,604	-		GFF3508	0.76	-0.0
3,548,689	+		GFF3508	0.88	+0.3
3,548,697	-		GFF3508	0.89	+0.1
3,548,697	-		GFF3508	0.89	+0.9
3,548,697	-		GFF3508	0.89	+1.3
3,548,704	+		GFF3508	0.90	+0.9
3,548,704	+		GFF3508	0.90	+0.2
3,548,712	-				-1.0
3,548,712	-				-1.3
3,548,712	-				-1.3
3,548,712	-				+0.4
3,548,712	-				+0.6
3,548,712	-				-0.0
3,548,712	-				-0.2
3,548,753	+				-1.3
3,548,753	+				-1.1
3,548,753	+				-1.2
3,548,756	-				-1.0
3,548,761	-				-1.0
3,548,761	-				-0.6
3,548,761	-				-2.0
3,548,774	+				+0.5
3,548,782	-				-0.3
3,548,785	+				-1.0
3,548,792	+				-0.7
3,548,794	+				+0.1
3,548,794	-				+0.3
3,548,794	-				+0.4
3,548,799	+				-1.1
3,548,807	+				-1.0
3,548,807	-				-0.7
3,548,817	+				-0.1
3,548,821	+				-0.7
3,548,841	+				-0.3
3,548,843	+				+0.4
3,548,843	+				-0.7
3,548,843	+				-2.7
3,548,843	+				-0.1
3,548,843	+				-0.6
3,548,843	+				+1.9
3,548,843	+				+0.1
3,548,843	+				+0.1
3,548,843	+				-0.3
3,548,843	+				+1.4
3,548,843	+				+0.6
3,548,843	+				+0.2
3,548,843	-				-0.2
3,548,851	-		GFF3509	0.10	-0.9
3,548,851	-		GFF3509	0.10	-1.4
3,548,851	-		GFF3509	0.10	+0.2
3,548,851	-		GFF3509	0.10	+0.3
3,548,851	-		GFF3509	0.10	-1.0
3,548,851	-		GFF3509	0.10	-0.1
3,548,851	-		GFF3509	0.10	-0.9
3,548,851	-		GFF3509	0.10	+0.8
3,548,851	-		GFF3509	0.10	-0.5
3,548,853	+		GFF3509	0.11	-0.3
3,548,858	+		GFF3509	0.11	-0.9
3,548,861	-		GFF3509	0.12	+0.5
3,548,861	-		GFF3509	0.12	+0.1
3,548,878	+		GFF3509	0.14	-2.4
3,548,916	+		GFF3509	0.19	-1.8
3,548,951	+		GFF3509	0.24	-2.3
3,548,970	-		GFF3509	0.27	-0.5
3,548,984	+		GFF3509	0.29	-0.0
3,548,984	+		GFF3509	0.29	-1.6
3,548,984	+		GFF3509	0.29	-1.6
3,548,984	+		GFF3509	0.29	-0.4
3,548,984	-		GFF3509	0.29	+0.6
3,548,992	-		GFF3509	0.30	+0.3
3,548,994	-		GFF3509	0.30	-0.1
3,548,994	-		GFF3509	0.30	-1.5
3,549,006	+		GFF3509	0.32	-1.4
3,549,006	+		GFF3509	0.32	+0.8
3,549,007	+		GFF3509	0.32	-0.3
3,549,014	-		GFF3509	0.33	+0.2
3,549,019	+		GFF3509	0.34	-0.0
3,549,043	+		GFF3509	0.37	+0.0
3,549,049	+		GFF3509	0.38	-1.6
3,549,057	-		GFF3509	0.39	+0.6
3,549,057	-		GFF3509	0.39	+0.7
3,549,057	-		GFF3509	0.39	+0.3
3,549,057	-		GFF3509	0.39	-0.5
3,549,083	+		GFF3509	0.42	-0.6
3,549,134	+		GFF3509	0.50	-0.9
3,549,134	-		GFF3509	0.50	-0.7
3,549,134	-		GFF3509	0.50	-0.5
3,549,142	+		GFF3509	0.51	-0.5
3,549,142	-		GFF3509	0.51	-0.3
3,549,142	-		GFF3509	0.51	-0.5
3,549,147	+		GFF3509	0.51	-0.6
3,549,155	-		GFF3509	0.52	-2.1
3,549,170	+		GFF3509	0.54	-0.1
3,549,178	-		GFF3509	0.56	-1.9
3,549,201	-		GFF3509	0.59	-0.4
3,549,203	+		GFF3509	0.59	+0.6
3,549,203	+		GFF3509	0.59	-0.9
3,549,203	+		GFF3509	0.59	+0.1
3,549,203	+		GFF3509	0.59	+0.8
3,549,203	+		GFF3509	0.59	+0.7
3,549,203	+		GFF3509	0.59	+0.0
3,549,211	-		GFF3509	0.60	-1.0
3,549,211	-		GFF3509	0.60	-0.6
3,549,211	-		GFF3509	0.60	-0.9
3,549,211	-		GFF3509	0.60	-0.3
3,549,212	+		GFF3509	0.60	+0.9
3,549,220	-		GFF3509	0.61	-2.2
3,549,254	+		GFF3509	0.66	+1.2
3,549,262	-		GFF3509	0.67	-2.0
3,549,264	+		GFF3509	0.67	-0.8
3,549,282	+		GFF3509	0.70	-0.1
3,549,325	-		GFF3509	0.76	-0.6
3,549,330	-		GFF3509	0.77	-0.3
3,549,348	+		GFF3509	0.79	+0.6
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