Strain Fitness in Sphingobium sp. HT1-2 around GFF3504

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,541,871	-				-0.2
3,541,873	+				+1.8
3,541,873	+				-0.3
3,541,873	+				+0.0
3,541,873	+				-2.3
3,541,873	+				-0.5
3,541,873	+				-0.0
3,541,873	+				+0.1
3,541,881	-				-0.2
3,541,881	-				-0.7
3,541,881	-				+0.8
3,541,888	-				-0.9
3,541,896	+				-0.2
3,541,904	-				-0.3
3,541,906	+				-0.8
3,541,906	+				-1.7
3,541,906	+				-0.6
3,541,906	+				+1.5
3,541,914	-		GFF3503	0.10	+0.3
3,541,914	-		GFF3503	0.10	-0.0
3,541,914	-		GFF3503	0.10	-1.3
3,541,914	-		GFF3503	0.10	-1.5
3,541,945	-		GFF3503	0.15	+0.1
3,541,956	-		GFF3503	0.17	-1.0
3,541,962	-		GFF3503	0.18	+1.0
3,541,967	-		GFF3503	0.18	+0.6
3,541,989	+		GFF3503	0.22	+0.3
3,541,989	+		GFF3503	0.22	-1.2
3,541,989	+		GFF3503	0.22	-1.4
3,541,989	+		GFF3503	0.22	+0.5
3,541,989	+		GFF3503	0.22	-2.0
3,541,997	-		GFF3503	0.23	-0.6
3,541,997	-		GFF3503	0.23	-1.6
3,541,997	-		GFF3503	0.23	-0.5
3,541,997	-		GFF3503	0.23	-0.4
3,542,006	+		GFF3503	0.24	-1.5
3,542,032	+		GFF3503	0.28	-0.3
3,542,066	+		GFF3503	0.34	+0.3
3,542,066	+		GFF3503	0.34	-0.5
3,542,066	+		GFF3503	0.34	-1.2
3,542,074	+		GFF3503	0.35	-0.3
3,542,074	-		GFF3503	0.35	+1.6
3,542,074	-		GFF3503	0.35	+0.3
3,542,074	-		GFF3503	0.35	-0.9
3,542,074	-		GFF3503	0.35	-0.2
3,542,126	-		GFF3503	0.43	-0.2
3,542,126	-		GFF3503	0.43	-1.0
3,542,166	+		GFF3503	0.49	-0.4
3,542,172	+		GFF3503	0.50	-2.7
3,542,172	+		GFF3503	0.50	+0.5
3,542,180	-		GFF3503	0.51	-1.7
3,542,180	-		GFF3503	0.51	-0.7
3,542,180	-		GFF3503	0.51	+0.3
3,542,181	+		GFF3503	0.51	+0.4
3,542,182	-		GFF3503	0.51	-2.5
3,542,201	+		GFF3503	0.54	+1.0
3,542,208	+		GFF3503	0.55	-0.7
3,542,216	-		GFF3503	0.57	-0.7
3,542,216	-		GFF3503	0.57	+1.0
3,542,216	-		GFF3503	0.57	+0.4
3,542,224	-		GFF3503	0.58	-1.3
3,542,249	-		GFF3503	0.62	-0.2
3,542,288	+		GFF3503	0.68	-0.3
3,542,288	+		GFF3503	0.68	+0.1
3,542,288	+		GFF3503	0.68	+1.5
3,542,288	+		GFF3503	0.68	+0.4
3,542,288	+		GFF3503	0.68	+1.5
3,542,293	+		GFF3503	0.69	+0.6
3,542,293	+		GFF3503	0.69	-0.4
3,542,293	+		GFF3503	0.69	-0.4
3,542,293	+		GFF3503	0.69	+0.1
3,542,293	+		GFF3503	0.69	-0.8
3,542,293	+		GFF3503	0.69	-0.7
3,542,293	+		GFF3503	0.69	+0.9
3,542,293	+		GFF3503	0.69	-0.1
3,542,293	+		GFF3503	0.69	-2.4
3,542,293	+		GFF3503	0.69	-0.8
3,542,296	-		GFF3503	0.69	-0.0
3,542,296	-		GFF3503	0.69	+0.5
3,542,296	-		GFF3503	0.69	-0.0
3,542,296	-		GFF3503	0.69	+0.1
3,542,296	-		GFF3503	0.69	-0.0
3,542,296	-		GFF3503	0.69	-0.2
3,542,296	-		GFF3503	0.69	+1.4
3,542,301	+		GFF3503	0.70	+0.2
3,542,301	-		GFF3503	0.70	+0.1
3,542,301	-		GFF3503	0.70	-0.9
3,542,301	-		GFF3503	0.70	-0.4
3,542,301	-		GFF3503	0.70	+1.3
3,542,301	-		GFF3503	0.70	-2.0
3,542,301	-		GFF3503	0.70	+0.1
3,542,301	-		GFF3503	0.70	-1.3
3,542,301	-		GFF3503	0.70	-0.3
3,542,301	-		GFF3503	0.70	-2.1
3,542,319	+		GFF3503	0.73	+2.1
3,542,344	+		GFF3503	0.76	+1.8
3,542,347	+		GFF3503	0.77	+0.3
3,542,370	+		GFF3503	0.80	-1.4
3,542,371	+		GFF3503	0.80	-1.1
3,542,379	-		GFF3503	0.82	-1.5
3,542,379	-		GFF3503	0.82	+0.9
3,542,379	-		GFF3503	0.82	-1.1
3,542,394	+		GFF3503	0.84	+0.2
3,542,402	+		GFF3503	0.85	-0.6
3,542,430	+		GFF3503	0.90	+1.1
3,542,430	+		GFF3503	0.90	-0.9
3,542,450	+				-0.0
3,542,450	+				-0.9
3,542,458	-				-0.4
3,542,477	-				+0.4
3,542,488	-				-0.3
3,542,492	+				+0.5
3,542,492	+				-1.8
3,542,497	+				-0.9
3,542,497	+				-0.4
3,542,499	+				+1.0
3,542,499	+				+0.5
3,542,500	-				-0.9
3,542,505	-				-0.3
3,542,505	-				-1.3
3,542,505	-				-0.7
3,542,505	-				+0.7
3,542,505	-				-1.8
3,542,506	-				-0.5
3,542,507	-				-0.8
3,542,507	-				+0.2
3,542,507	-				-0.5
3,542,509	+				-1.4
3,542,512	-				-1.0
3,542,514	+				-0.4
3,542,523	-				-1.4
3,542,530	+				+0.5
3,542,534	+				-0.9
3,542,569	+				-1.4
3,542,577	-				+0.4
3,542,597	+				-2.0
3,542,601	+				-1.7
3,542,601	+				-1.4
3,542,601	+				-0.4
3,542,601	+				-1.1
3,542,633	+				+0.2
3,542,656	+				-0.3
3,542,664	-				-1.3
3,542,664	-				+0.8
3,542,664	-				-0.3
3,542,690	-				+0.3
3,542,711	-				-1.0
3,542,744	+				+0.1
3,542,752	-				-0.4
3,542,760	-				-0.1
3,542,771	+				+0.5
3,542,772	+				-0.1
3,542,782	+				-0.1
3,542,782	+				+0.4
3,542,788	+				+1.0
3,542,880	+				-0.1
3,542,880	+				-1.3
3,542,880	+				-2.1
3,542,880	+				-1.6
3,542,888	-				+0.7
3,542,888	-				+0.5
3,542,888	-				+0.4
3,542,895	-				+1.4
3,542,899	+				+0.4
3,542,899	+				-0.7
3,542,899	+				-2.2
3,542,899	+				+0.1
3,542,905	-				-1.8
3,542,907	-				+0.3
3,542,907	-				-0.7
3,542,907	-				+0.5
3,542,912	-				-2.2
3,542,919	+				-0.3
3,542,924	+				-0.8
3,542,924	+				-0.9
3,542,924	+				-0.3
3,542,932	-				-1.8
3,542,932	-				+1.2
3,542,932	-				+1.0
3,542,944	-				+0.5
3,542,946	+				+0.1
3,542,951	+				+1.1
3,542,951	-				+1.9
3,542,962	+				+0.9
3,542,970	+		GFF3504	0.10	-1.3
3,542,970	+		GFF3504	0.10	-2.3
3,542,970	-		GFF3504	0.10	-0.4
3,542,970	-		GFF3504	0.10	-0.3
3,542,970	-		GFF3504	0.10	-0.4
3,543,011	+		GFF3504	0.14	-0.2
3,543,011	+		GFF3504	0.14	+1.1
3,543,019	-		GFF3504	0.15	-0.6
3,543,019	-		GFF3504	0.15	+0.3
3,543,045	-		GFF3504	0.18	-1.2
3,543,047	-		GFF3504	0.18	+1.3
3,543,056	-		GFF3504	0.19	-0.4
3,543,056	-		GFF3504	0.19	-2.1
3,543,159	+		GFF3504	0.29	-0.7
3,543,167	-		GFF3504	0.30	-0.1
3,543,170	+		GFF3504	0.31	-0.1
3,543,177	+		GFF3504	0.31	+0.2
3,543,180	+		GFF3504	0.32	-1.3
3,543,182	+		GFF3504	0.32	+0.5
3,543,182	+		GFF3504	0.32	+0.5
3,543,182	+		GFF3504	0.32	-0.0
3,543,182	+		GFF3504	0.32	-0.1
3,543,182	+		GFF3504	0.32	+0.5
3,543,182	+		GFF3504	0.32	-1.4
3,543,182	+		GFF3504	0.32	-0.3
3,543,182	+		GFF3504	0.32	+0.4
3,543,188	+		GFF3504	0.32	+0.3
3,543,188	-		GFF3504	0.32	-0.4
3,543,189	+		GFF3504	0.33	-1.9
3,543,190	-		GFF3504	0.33	+0.0
3,543,190	-		GFF3504	0.33	-0.9
3,543,190	-		GFF3504	0.33	+0.1
3,543,190	-		GFF3504	0.33	-1.6
3,543,190	-		GFF3504	0.33	-2.5
3,543,190	-		GFF3504	0.33	-0.1
3,543,190	-		GFF3504	0.33	-1.3
3,543,196	-		GFF3504	0.33	-0.8
3,543,197	-		GFF3504	0.33	+0.5
3,543,218	+		GFF3504	0.35	-1.0
3,543,246	-		GFF3504	0.38	+0.3
3,543,263	-		GFF3504	0.40	-0.9
3,543,265	+		GFF3504	0.40	-0.9
3,543,265	+		GFF3504	0.40	-1.1
3,543,265	+		GFF3504	0.40	+0.9
3,543,273	-		GFF3504	0.41	-3.0
3,543,273	-		GFF3504	0.41	+1.8
3,543,273	-		GFF3504	0.41	-1.7
3,543,299	-		GFF3504	0.44	+0.6
3,543,308	+		GFF3504	0.45	-1.6
3,543,308	+		GFF3504	0.45	+0.0
3,543,308	+		GFF3504	0.45	-1.3
3,543,308	+		GFF3504	0.45	+0.7
3,543,308	+		GFF3504	0.45	+1.3
3,543,308	+		GFF3504	0.45	-0.4
3,543,308	+		GFF3504	0.45	-0.2
3,543,313	+		GFF3504	0.45	+0.6
3,543,314	-		GFF3504	0.45	-1.7
3,543,316	-		GFF3504	0.46	+0.2
3,543,316	-		GFF3504	0.46	-1.7
3,543,316	-		GFF3504	0.46	+1.1
3,543,316	-		GFF3504	0.46	-0.7
3,543,316	-		GFF3504	0.46	-1.5
3,543,316	-		GFF3504	0.46	-0.1
3,543,316	-		GFF3504	0.46	+0.1
3,543,316	-		GFF3504	0.46	-1.3
3,543,316	-		GFF3504	0.46	-0.5
3,543,316	-		GFF3504	0.46	-0.3
3,543,325	+		GFF3504	0.46	+1.4
3,543,333	-		GFF3504	0.47	-1.4
3,543,333	-		GFF3504	0.47	-0.3
3,543,342	+		GFF3504	0.48	-0.0
3,543,344	-		GFF3504	0.48	-0.2
3,543,353	+		GFF3504	0.49	-1.2
3,543,356	-		GFF3504	0.50	-2.6
3,543,361	-		GFF3504	0.50	-0.1
3,543,361	-		GFF3504	0.50	-1.5
3,543,361	-		GFF3504	0.50	-0.7
3,543,361	-		GFF3504	0.50	-0.6
3,543,373	-		GFF3504	0.51	-1.2
3,543,379	-		GFF3504	0.52	-0.3
3,543,403	-		GFF3504	0.54	-1.2
3,543,432	+		GFF3504	0.57	-1.3
3,543,447	-		GFF3504	0.59	+0.6
3,543,448	+		GFF3504	0.59	+0.1
3,543,448	+		GFF3504	0.59	-2.2
3,543,456	-		GFF3504	0.60	+0.2
3,543,456	-		GFF3504	0.60	+0.0
3,543,479	+		GFF3504	0.62	-0.0
3,543,480	+		GFF3504	0.62	-0.4
3,543,480	+		GFF3504	0.62	-0.4
3,543,483	-		GFF3504	0.63	+0.7
3,543,499	+		GFF3504	0.64	+0.4
3,543,513	-		GFF3504	0.66	-0.5
3,543,565	-		GFF3504	0.71	-1.3
3,543,606	+		GFF3504	0.75	-0.5
3,543,611	+		GFF3504	0.76	+0.5
3,543,611	+		GFF3504	0.76	-1.5
3,543,619	-		GFF3504	0.76	-0.2
3,543,619	-		GFF3504	0.76	+0.5
3,543,627	-		GFF3504	0.77	+1.5
3,543,627	-		GFF3504	0.77	-0.7
3,543,629	+		GFF3504	0.78	-0.5
3,543,629	+		GFF3504	0.78	+0.0
3,543,629	+		GFF3504	0.78	+0.8
3,543,634	+		GFF3504	0.78	-2.8
3,543,639	+		GFF3504	0.79	-2.0
3,543,639	+		GFF3504	0.79	+0.5
3,543,639	+		GFF3504	0.79	-0.4
3,543,641	+		GFF3504	0.79	+0.1
3,543,642	-		GFF3504	0.79	+0.3
3,543,647	-		GFF3504	0.79	+0.7
3,543,647	-		GFF3504	0.79	-0.3
3,543,649	+		GFF3504	0.80	+0.4
3,543,652	-		GFF3504	0.80	-0.0
3,543,659	+		GFF3504	0.81	-0.7
3,543,659	+		GFF3504	0.81	-0.3
3,543,659	+		GFF3504	0.81	-0.8
3,543,667	-		GFF3504	0.81	+0.2
3,543,667	-		GFF3504	0.81	+0.5
3,543,667	-		GFF3504	0.81	+0.9
3,543,667	-		GFF3504	0.81	-0.6
3,543,710	-		GFF3504	0.86	+1.1
3,543,712	+		GFF3504	0.86	+0.7
3,543,714	-		GFF3504	0.86	-1.2
3,543,717	+		GFF3504	0.87	+0.4
3,543,730	-		GFF3504	0.88	-0.5
3,543,747	-		GFF3504	0.90	+1.0
3,543,747	-		GFF3504	0.90	-1.0
3,543,754	+				+0.2
3,543,782	+				-0.1
3,543,782	+				+0.8
3,543,795	+				-1.3
3,543,798	+				+0.3
3,543,808	+				-0.5
3,543,808	+				-1.0
3,543,810	-				-0.3
3,543,816	-				+0.1
3,543,816	-				-1.5
3,543,842	+				-1.4
3,543,852	+				-1.0
3,543,860	+				-0.3
3,543,860	+				+0.2
3,543,860	+				-0.1
3,543,860	+				+0.7
3,543,861	+				+0.7
3,543,868	-				-0.8
3,543,868	-				-0.2
3,543,868	-				-0.4
3,543,868	-				-0.4
3,543,868	-				+1.5
3,543,868	-				+0.8
3,543,868	-				+0.5
3,543,868	-				-0.2
3,543,868	-				+0.7
3,543,888	+				-0.3
3,543,896	-				-1.2
3,543,903	+				-0.9
3,543,907	-				-0.4
3,543,912	+				-0.5
3,543,916	-				+0.0
3,543,935	+				-1.7
3,543,940	+				-0.5
3,543,943	-				-0.2
3,543,943	-				+0.3
3,543,948	-				-0.3
3,543,962	+				+1.2
3,543,968	-				+0.1
3,543,988	-				-0.3
3,543,999	-				-0.3
3,543,999	-				-0.5
3,543,999	-				+0.3
3,544,032	+				+1.1
3,544,038	+				-0.7
3,544,046	-				+0.5
3,544,070	+				-1.0
3,544,080	+				+1.4
3,544,082	+				-1.4
3,544,088	-				-2.1
3,544,109	-				-3.0
3,544,130	-		GFF3505	0.11	+0.0
3,544,132	-		GFF3505	0.11	+0.2
3,544,144	-		GFF3505	0.11	-0.3
3,544,148	+		GFF3505	0.11	-0.2
3,544,148	+		GFF3505	0.11	-0.6
3,544,181	-		GFF3505	0.13	-1.1
3,544,182	+		GFF3505	0.13	-0.5
3,544,187	+		GFF3505	0.13	-1.8
3,544,190	-		GFF3505	0.13	+1.8
3,544,195	-		GFF3505	0.13	+0.5
3,544,195	-		GFF3505	0.13	+0.2
3,544,195	-		GFF3505	0.13	-3.3
3,544,195	-		GFF3505	0.13	-0.7
3,544,195	-		GFF3505	0.13	-0.3
3,544,195	-		GFF3505	0.13	+0.3
3,544,200	+		GFF3505	0.13	-0.1
3,544,203	-		GFF3505	0.14	-2.5
3,544,211	+		GFF3505	0.14	+0.1
3,544,213	-		GFF3505	0.14	-0.3
3,544,213	-		GFF3505	0.14	+0.9
3,544,213	-		GFF3505	0.14	-2.4
3,544,229	+		GFF3505	0.15	-1.1
3,544,278	-		GFF3505	0.16	+0.5
3,544,285	+		GFF3505	0.17	+0.4
3,544,285	+		GFF3505	0.17	+0.3
3,544,285	+		GFF3505	0.17	-1.1
3,544,285	+		GFF3505	0.17	-0.0
3,544,288	-		GFF3505	0.17	-2.6
3,544,299	-		GFF3505	0.17	+0.3
3,544,325	-		GFF3505	0.18	-1.0
3,544,325	-		GFF3505	0.18	+1.0
3,544,325	-		GFF3505	0.18	-0.1
3,544,375	-		GFF3505	0.20	+0.0
3,544,380	+		GFF3505	0.21	+0.3
3,544,388	+		GFF3505	0.21	-0.5
3,544,423	+		GFF3505	0.22	+0.0
3,544,433	+		GFF3505	0.23	-0.6
3,544,433	+		GFF3505	0.23	-0.3
3,544,441	-		GFF3505	0.23	-0.5
3,544,441	-		GFF3505	0.23	-1.0
3,544,441	-		GFF3505	0.23	-0.3
3,544,458	+		GFF3505	0.24	-0.6
3,544,466	-		GFF3505	0.24	+0.5
3,544,481	+		GFF3505	0.25	-0.1
3,544,496	+		GFF3505	0.25	-0.5
3,544,496	+		GFF3505	0.25	+0.2
3,544,501	+		GFF3505	0.25	-0.6
3,544,509	-		GFF3505	0.26	-0.4
3,544,510	+		GFF3505	0.26	-0.1
3,544,518	-		GFF3505	0.26	+0.4
3,544,535	+		GFF3505	0.27	-0.7
3,544,535	+		GFF3505	0.27	-0.5
3,544,535	+		GFF3505	0.27	+0.4
3,544,542	+		GFF3505	0.27	-0.5
3,544,542	+		GFF3505	0.27	-2.4
3,544,542	+		GFF3505	0.27	+0.3
3,544,543	-		GFF3505	0.27	-1.2
3,544,547	+		GFF3505	0.27	-0.3
3,544,550	-		GFF3505	0.27	-0.4
3,544,550	-		GFF3505	0.27	+0.2
3,544,550	-		GFF3505	0.27	-1.0
3,544,550	-		GFF3505	0.27	+0.2
3,544,550	-		GFF3505	0.27	+0.4
3,544,550	-		GFF3505	0.27	-1.9
3,544,550	-		GFF3505	0.27	-2.2
3,544,552	+		GFF3505	0.27	+0.5
3,544,552	+		GFF3505	0.27	-0.4
3,544,552	+		GFF3505	0.27	+0.8
3,544,560	-		GFF3505	0.28	-0.8
3,544,618	+		GFF3505	0.30	+0.4
3,544,618	-		GFF3505	0.30	-0.4
3,544,618	-		GFF3505	0.30	-0.7
3,544,646	+		GFF3505	0.31	-0.4
3,544,646	+		GFF3505	0.31	-1.3
3,544,650	-		GFF3505	0.31	+0.4
3,544,654	-		GFF3505	0.31	-1.6
3,544,656	-		GFF3505	0.32	-1.2
3,544,663	+		GFF3505	0.32	+1.6
3,544,727	+		GFF3505	0.34	-0.3
3,544,727	+		GFF3505	0.34	-1.6
3,544,735	-		GFF3505	0.35	-1.4
3,544,758	+		GFF3505	0.36	-2.0
3,544,758	+		GFF3505	0.36	-1.0
3,544,758	+		GFF3505	0.36	+0.6
3,544,758	+		GFF3505	0.36	+0.5
3,544,763	+		GFF3505	0.36	-0.6
3,544,766	-		GFF3505	0.36	-0.6
3,544,766	-		GFF3505	0.36	+0.3
3,544,766	-		GFF3505	0.36	-1.7
3,544,766	-		GFF3505	0.36	-0.6
3,544,766	-		GFF3505	0.36	+0.6
3,544,766	-		GFF3505	0.36	-0.2
3,544,776	+		GFF3505	0.36	+0.3
3,544,793	-		GFF3505	0.37	+0.2
3,544,815	+		GFF3505	0.38	-1.6
3,544,818	-		GFF3505	0.38	+0.2
3,544,833	+		GFF3505	0.39	-1.0
3,544,833	+		GFF3505	0.39	+0.9
3,544,841	-		GFF3505	0.39	-1.6