Strain Fitness in Sphingobium sp. HT1-2 around GFF3368

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,413,984	-		GFF3365	0.23	+1.0
3,413,984	-		GFF3365	0.23	+0.5
3,413,984	-		GFF3365	0.23	-0.5
3,413,984	-		GFF3365	0.23	+0.9
3,413,984	-		GFF3365	0.23	+0.7
3,413,984	-		GFF3365	0.23	+0.4
3,413,986	+		GFF3365	0.24	+0.2
3,414,017	-		GFF3365	0.35	+0.9
3,414,017	-		GFF3365	0.35	+1.4
3,414,025	-		GFF3365	0.38	+1.0
3,414,062	+		GFF3365	0.52	+0.4
3,414,062	+		GFF3365	0.52	+0.9
3,414,062	+		GFF3365	0.52	+1.3
3,414,062	+		GFF3365	0.52	-0.4
3,414,062	+		GFF3365	0.52	+1.2
3,414,062	+		GFF3365	0.52	-0.1
3,414,062	+		GFF3365	0.52	+0.8
3,414,062	+		GFF3365	0.52	-1.3
3,414,062	+		GFF3365	0.52	-0.1
3,414,062	+		GFF3365	0.52	+0.9
3,414,062	+		GFF3365	0.52	+2.0
3,414,062	+		GFF3365	0.52	-0.1
3,414,062	+		GFF3365	0.52	-1.4
3,414,062	+		GFF3365	0.52	+0.8
3,414,062	+		GFF3365	0.52	-0.5
3,414,062	+		GFF3365	0.52	+0.2
3,414,062	+		GFF3365	0.52	+2.1
3,414,070	-		GFF3365	0.55	-1.0
3,414,070	-		GFF3365	0.55	-1.7
3,414,070	-		GFF3365	0.55	-0.9
3,414,070	-		GFF3365	0.55	+1.4
3,414,070	-		GFF3365	0.55	-0.5
3,414,070	-		GFF3365	0.55	-1.2
3,414,070	-		GFF3365	0.55	-1.9
3,414,070	-		GFF3365	0.55	+0.3
3,414,070	-		GFF3365	0.55	+0.4
3,414,070	-		GFF3365	0.55	+0.1
3,414,070	-		GFF3365	0.55	-1.8
3,414,070	-		GFF3365	0.55	+0.3
3,414,072	-		GFF3365	0.56	+1.4
3,414,072	-		GFF3365	0.56	-2.0
3,414,072	-		GFF3365	0.56	+0.8
3,414,095	-		GFF3365	0.64	+2.2
3,414,132	-		GFF3365	0.78	+1.1
3,414,133	+		GFF3365	0.79	+1.1
3,414,141	-		GFF3365	0.82	+0.4
3,414,149	-		GFF3365	0.85	+1.1
3,414,151	+		GFF3365	0.85	+1.2
3,414,161	+		GFF3365	0.89	-0.1
3,414,168	+				+0.7
3,414,174	-				+0.9
3,414,201	-				+0.1
3,414,209	-				+0.3
3,414,210	-				-1.4
3,414,230	-		GFF3366	0.13	-1.7
3,414,237	-		GFF3366	0.17	+0.1
3,414,254	-		GFF3366	0.25	-0.6
3,414,320	+		GFF3366	0.56	+0.4
3,414,389	-		GFF3366	0.89	-0.4
3,414,435	+				+0.8
3,414,446	+				-0.0
3,414,453	-				+0.5
3,414,457	-				+1.3
3,414,469	-		GFF3367	0.11	+1.0
3,414,509	+		GFF3367	0.19	-0.2
3,414,512	-		GFF3367	0.19	-1.8
3,414,517	-		GFF3367	0.20	-0.6
3,414,517	-		GFF3367	0.20	+0.1
3,414,543	+		GFF3367	0.25	-1.4
3,414,551	-		GFF3367	0.27	-0.5
3,414,564	-		GFF3367	0.29	-0.5
3,414,621	+		GFF3367	0.40	+0.1
3,414,622	+		GFF3367	0.40	-1.3
3,414,626	+		GFF3367	0.41	+0.7
3,414,629	-		GFF3367	0.41	-0.8
3,414,629	-		GFF3367	0.41	+0.6
3,414,634	-		GFF3367	0.42	-2.2
3,414,634	-		GFF3367	0.42	-1.0
3,414,649	+		GFF3367	0.45	-0.4
3,414,653	-		GFF3367	0.46	-0.5
3,414,673	+		GFF3367	0.50	+0.6
3,414,673	+		GFF3367	0.50	-1.1
3,414,681	-		GFF3367	0.51	-0.2
3,414,681	-		GFF3367	0.51	-0.2
3,414,699	+		GFF3367	0.54	+0.6
3,414,705	-		GFF3367	0.56	+0.2
3,414,733	+		GFF3367	0.61	-0.0
3,414,746	-		GFF3367	0.63	+0.2
3,414,746	-		GFF3367	0.63	-2.7
3,414,747	-		GFF3367	0.63	+0.6
3,414,813	+		GFF3367	0.76	-0.0
3,414,819	+		GFF3367	0.77	+0.8
3,414,832	+		GFF3367	0.79	-1.2
3,414,849	+		GFF3367	0.83	+0.4
3,414,849	+		GFF3367	0.83	+1.3
3,414,852	-		GFF3367	0.83	+0.5
3,414,857	-		GFF3367	0.84	-0.3
3,414,857	-		GFF3367	0.84	+0.2
3,414,857	-		GFF3367	0.84	-0.3
3,414,857	-		GFF3367	0.84	+1.0
3,414,857	-		GFF3367	0.84	-0.0
3,414,857	-		GFF3367	0.84	-0.4
3,414,857	-		GFF3367	0.84	+1.6
3,414,857	-		GFF3367	0.84	+0.9
3,414,857	-		GFF3367	0.84	-0.4
3,414,857	-		GFF3367	0.84	+0.4
3,414,923	+				-1.4
3,414,929	+				+0.0
3,414,935	+				-0.1
3,414,937	-				+0.1
3,414,943	-				-0.2
3,414,943	-				-0.3
3,414,953	-				-0.0
3,414,971	+				+0.5
3,414,979	-				+1.0
3,414,989	-				-1.3
3,415,069	-		GFF3368	0.29	+1.4
3,415,071	+		GFF3368	0.30	-0.7
3,415,086	-		GFF3368	0.35	+1.1
3,415,095	-		GFF3368	0.38	+0.8
3,415,115	-		GFF3368	0.45	-0.4
3,415,117	+		GFF3368	0.46	-0.3
3,415,124	+		GFF3368	0.48	+0.0
3,415,124	+		GFF3368	0.48	+0.9
3,415,125	-		GFF3368	0.48	+0.3
3,415,125	-		GFF3368	0.48	+0.7
3,415,125	-		GFF3368	0.48	+0.8
3,415,139	+		GFF3368	0.53	+0.4
3,415,139	+		GFF3368	0.53	-0.4
3,415,139	+		GFF3368	0.53	+1.2
3,415,139	+		GFF3368	0.53	-1.0
3,415,139	+		GFF3368	0.53	+0.9
3,415,139	+		GFF3368	0.53	-0.6
3,415,139	+		GFF3368	0.53	+1.4
3,415,139	+		GFF3368	0.53	+0.2
3,415,139	+		GFF3368	0.53	+1.2
3,415,139	+		GFF3368	0.53	+0.8
3,415,139	+		GFF3368	0.53	-1.3
3,415,139	+		GFF3368	0.53	-1.2
3,415,139	+		GFF3368	0.53	+1.0
3,415,139	+		GFF3368	0.53	-0.8
3,415,139	+		GFF3368	0.53	-1.2
3,415,142	-		GFF3368	0.54	+2.0
3,415,147	-		GFF3368	0.56	+2.1
3,415,147	-		GFF3368	0.56	+0.7
3,415,147	-		GFF3368	0.56	-0.8
3,415,147	-		GFF3368	0.56	+0.4
3,415,147	-		GFF3368	0.56	+1.5
3,415,147	-		GFF3368	0.56	+1.9
3,415,147	-		GFF3368	0.56	+0.7
3,415,147	-		GFF3368	0.56	+0.7
3,415,147	-		GFF3368	0.56	-0.1
3,415,147	-		GFF3368	0.56	+0.9
3,415,149	+		GFF3368	0.57	+0.3
3,415,149	+		GFF3368	0.57	-0.7
3,415,149	+		GFF3368	0.57	+0.7
3,415,149	+		GFF3368	0.57	-1.0
3,415,150	+		GFF3368	0.57	+1.0
3,415,157	-		GFF3368	0.59	+1.7
3,415,160	+		GFF3368	0.60	-1.2
3,415,160	+		GFF3368	0.60	-0.7
3,415,160	+		GFF3368	0.60	+0.7
3,415,163	-		GFF3368	0.62	+1.5
3,415,168	-		GFF3368	0.63	-1.5
3,415,168	-		GFF3368	0.63	+0.4
3,415,168	-		GFF3368	0.63	+0.4
3,415,177	+		GFF3368	0.66	-2.3
3,415,185	-		GFF3368	0.69	+0.7
3,415,236	+		GFF3368	0.87	-1.5
3,415,236	+		GFF3368	0.87	-0.5
3,415,244	-		GFF3368	0.89	-0.5
3,415,244	-		GFF3368	0.89	+0.8
3,415,249	+				+0.6
3,415,249	+				-0.1
3,415,249	+				+1.0
3,415,257	-				+0.9
3,415,257	-				+1.3
3,415,257	-				+0.1
3,415,264	-				+0.9
3,415,269	+				+0.3
3,415,269	+				+0.5
3,415,269	+				-0.0
3,415,269	+				+0.3
3,415,270	-				+0.6
3,415,318	-				+0.9
3,415,355	+		GFF3369	0.25	+1.7
3,415,362	+		GFF3369	0.30	+0.9
3,415,370	-		GFF3369	0.36	+0.9
3,415,370	-		GFF3369	0.36	+1.1
3,415,372	-		GFF3369	0.38	-1.5
3,415,394	+		GFF3369	0.54	+0.2
3,415,395	-		GFF3369	0.54	-1.0
3,415,397	-		GFF3369	0.56	-1.5
3,415,405	-		GFF3369	0.62	-1.3
3,415,427	+		GFF3369	0.78	-0.4
3,415,456	+				-2.8
3,415,464	-				+1.3
3,415,474	-				+2.2
3,415,477	-				+0.3
3,415,516	+				-1.6
3,415,526	+				+0.0
3,415,531	+				-0.3
3,415,532	+				+0.3
3,415,539	-				-1.0
3,415,539	-				+1.3
3,415,539	-				+1.1
3,415,553	+				+0.0
3,415,561	-				-2.0
3,415,561	-				-1.3
3,415,579	+				-0.7
3,415,580	-				+0.4
3,415,668	-				-2.3
3,415,678	+				+0.6
3,415,705	+				+1.0
3,415,705	+				+0.6
3,415,718	-				+0.4
3,415,733	+				+1.3
3,415,749	+		GFF3370	0.11	-0.3
3,415,757	-		GFF3370	0.14	-0.4
3,415,760	+		GFF3370	0.15	+1.3
3,415,769	+		GFF3370	0.18	-0.7
3,415,795	+		GFF3370	0.29	+0.9
3,415,796	-		GFF3370	0.29	-1.4
3,415,796	-		GFF3370	0.29	-0.7
3,415,801	-		GFF3370	0.31	+0.4
3,415,816	-		GFF3370	0.37	-0.9
3,415,845	-		GFF3370	0.48	-1.3
3,415,891	+		GFF3370	0.66	+0.6
3,415,891	+		GFF3370	0.66	-0.6
3,415,899	-		GFF3370	0.69	+0.5
3,415,901	-		GFF3370	0.70	+0.7
3,415,916	+		GFF3370	0.76	+0.1
3,415,918	-		GFF3370	0.77	+0.9
3,415,920	+		GFF3370	0.78	+0.3
3,415,921	+		GFF3370	0.78	+1.0
3,415,945	-		GFF3370	0.87	-0.7
3,415,978	-				-1.6
3,416,004	-				+1.2
3,416,004	-				+0.8
3,416,005	+				+0.3
3,416,011	+				-1.0
3,416,026	-				-0.8
3,416,064	+				+1.2
3,416,064	+				+1.1
3,416,069	+				+0.1
3,416,071	+				+0.3
3,416,071	+				+0.3
3,416,079	-				-0.7
3,416,117	-				+1.2
3,416,119	+				+0.8
3,416,135	-		GFF3371	0.16	+0.5
3,416,146	+		GFF3371	0.23	-0.0
3,416,150	-		GFF3371	0.26	+1.5
3,416,154	-		GFF3371	0.29	+0.5
3,416,154	-		GFF3371	0.29	-0.5
3,416,154	-		GFF3371	0.29	+0.6
3,416,154	-		GFF3371	0.29	+0.7
3,416,166	+		GFF3371	0.37	+1.2
3,416,166	+		GFF3371	0.37	+0.5
3,416,166	+		GFF3371	0.37	-0.7
3,416,166	+		GFF3371	0.37	+0.6
3,416,166	+		GFF3371	0.37	+0.7
3,416,166	+		GFF3371	0.37	+0.5
3,416,167	+		GFF3371	0.37	-0.4
3,416,167	+		GFF3371	0.37	+0.6
3,416,167	-		GFF3371	0.37	+0.8
3,416,174	-		GFF3371	0.42	-0.5
3,416,174	-		GFF3371	0.42	-0.1
3,416,174	-		GFF3371	0.42	+0.1
3,416,174	-		GFF3371	0.42	+0.1
3,416,174	-		GFF3371	0.42	+1.0
3,416,174	-		GFF3371	0.42	+1.8
3,416,174	-		GFF3371	0.42	+0.9
3,416,174	-		GFF3371	0.42	+1.6
3,416,174	-		GFF3371	0.42	+0.5
3,416,232	-		GFF3371	0.82	-1.5
3,416,242	-		GFF3371	0.88	-0.0
3,416,244	+				+0.4
3,416,249	+				+0.4
3,416,249	+				-0.7
3,416,263	+				-0.5
3,416,268	+				+0.4
3,416,271	-				+0.1
3,416,271	-				+0.8
3,416,273	+				-1.6