Strain Fitness in Sphingobium sp. HT1-2 around GFF3325

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,378,372	+		GFF3323	0.81	-1.5
3,378,402	+		GFF3323	0.84	-0.8
3,378,411	+		GFF3323	0.85	+1.1
3,378,419	-		GFF3323	0.86	+0.4
3,378,419	-		GFF3323	0.86	+0.7
3,378,450	+		GFF3323	0.89	-2.5
3,378,452	+		GFF3323	0.90	-1.4
3,378,452	+		GFF3323	0.90	-0.3
3,378,459	+				-0.3
3,378,459	-				-1.5
3,378,460	-				+0.6
3,378,504	+				-0.9
3,378,504	+				+0.5
3,378,509	+				-2.3
3,378,509	+				-1.0
3,378,511	-				-2.3
3,378,511	-				-0.7
3,378,512	-				-0.1
3,378,517	-				-1.3
3,378,517	-				-1.3
3,378,521	+				-0.5
3,378,523	-				-1.4
3,378,529	-				-2.0
3,378,533	-				-1.6
3,378,555	+				-0.1
3,378,568	+				+0.2
3,378,578	-				-0.1
3,378,578	-				-1.6
3,378,638	+				+0.4
3,378,646	-				-1.3
3,378,646	-				-0.8
3,379,327	-				-0.9
3,379,329	-				+0.4
3,379,340	+				+0.2
3,379,394	+		GFF3325	0.11	-1.9
3,379,402	-		GFF3325	0.12	-0.9
3,379,412	-		GFF3325	0.14	+1.4
3,379,414	+		GFF3325	0.15	-0.6
3,379,414	+		GFF3325	0.15	+0.2
3,379,414	+		GFF3325	0.15	-1.0
3,379,422	-		GFF3325	0.16	+0.7
3,379,422	-		GFF3325	0.16	-1.0
3,379,422	-		GFF3325	0.16	+0.2
3,379,422	-		GFF3325	0.16	-2.3
3,379,422	-		GFF3325	0.16	-1.9
3,379,447	+		GFF3325	0.21	-1.3
3,379,447	+		GFF3325	0.21	+0.1
3,379,447	+		GFF3325	0.21	-1.0
3,379,447	+		GFF3325	0.21	-0.5
3,379,447	+		GFF3325	0.21	-1.1
3,379,455	-		GFF3325	0.22	+1.0
3,379,455	-		GFF3325	0.22	+0.8
3,379,455	-		GFF3325	0.22	+0.1
3,379,457	+		GFF3325	0.23	+0.7
3,379,465	-		GFF3325	0.24	+1.1
3,379,478	+		GFF3325	0.27	-2.6
3,379,517	+		GFF3325	0.34	+0.9
3,379,533	+		GFF3325	0.37	+0.1
3,379,533	+		GFF3325	0.37	-1.3
3,379,533	+		GFF3325	0.37	-2.1
3,379,533	+		GFF3325	0.37	+0.3
3,379,533	+		GFF3325	0.37	-1.6
3,379,533	+		GFF3325	0.37	-2.5
3,379,541	-		GFF3325	0.39	+0.1
3,379,541	-		GFF3325	0.39	-2.3
3,379,541	-		GFF3325	0.39	+0.5
3,379,541	-		GFF3325	0.39	-0.0
3,379,541	-		GFF3325	0.39	-1.5
3,379,541	-		GFF3325	0.39	-2.0
3,379,541	-		GFF3325	0.39	-1.4
3,379,541	-		GFF3325	0.39	+0.5
3,379,573	+		GFF3325	0.45	-2.0
3,379,578	-		GFF3325	0.46	-1.4
3,379,588	+		GFF3325	0.47	-0.0
3,379,593	+		GFF3325	0.48	+0.5
3,379,603	-		GFF3325	0.50	+0.3
3,379,606	+		GFF3325	0.51	-2.0
3,379,606	+		GFF3325	0.51	-1.3
3,379,614	-		GFF3325	0.52	+0.4
3,379,614	-		GFF3325	0.52	-0.2
3,379,614	-		GFF3325	0.52	+0.5
3,379,614	-		GFF3325	0.52	-0.3
3,379,614	-		GFF3325	0.52	-1.6
3,379,651	-		GFF3325	0.59	+0.1
3,379,693	+		GFF3325	0.67	-2.1
3,379,700	+		GFF3325	0.69	-0.9
3,379,700	+		GFF3325	0.69	+1.4
3,379,702	+		GFF3325	0.69	-0.2
3,379,711	-		GFF3325	0.71	+0.3
3,379,713	+		GFF3325	0.71	-0.3
3,379,713	+		GFF3325	0.71	-1.3
3,379,721	-		GFF3325	0.73	-1.5
3,379,721	-		GFF3325	0.73	-0.4
3,379,742	+		GFF3325	0.76	+1.3
3,379,742	+		GFF3325	0.76	-0.3
3,379,742	+		GFF3325	0.76	-0.1
3,379,742	+		GFF3325	0.76	+0.6
3,379,771	+		GFF3325	0.82	-0.8
3,379,793	+		GFF3325	0.86	-2.1
3,379,793	+		GFF3325	0.86	-2.1
3,379,801	-		GFF3325	0.88	+1.1
3,379,824	+				-0.5
3,379,827	-				-1.4
3,379,827	-				-0.2
3,379,832	-				+0.0
3,379,839	+				+0.8
3,379,839	+				-2.4
3,379,839	+				+1.4
3,379,839	+				-0.9
3,379,839	+				-0.3
3,379,847	-				+1.1
3,379,847	-				+0.3
3,379,847	-				-0.0
3,379,847	-				-0.5
3,379,847	-				+0.2
3,379,847	-				+0.4
3,379,847	-				-0.3
3,379,847	-				+0.7
3,379,847	-				-1.9
3,379,860	+				-0.9
3,379,880	-				-0.2
3,379,880	-				-1.8
3,379,884	+				-0.1
3,379,894	+				+0.1
3,379,912	+				-1.4
3,379,950	-				-0.2
3,379,952	+				-1.4
3,379,952	+				-0.8
3,379,960	-		GFF3326	0.11	-0.2
3,379,960	-		GFF3326	0.11	+0.3
3,379,960	-		GFF3326	0.11	+1.4
3,379,960	-		GFF3326	0.11	-1.0
3,379,960	-		GFF3326	0.11	+0.7
3,379,962	+		GFF3326	0.11	+1.1
3,379,962	+		GFF3326	0.11	-0.0
3,379,962	+		GFF3326	0.11	+1.6
3,379,962	+		GFF3326	0.11	-0.2
3,379,963	+		GFF3326	0.11	-0.8
3,379,963	+		GFF3326	0.11	-2.6
3,379,963	+		GFF3326	0.11	-1.5
3,379,963	+		GFF3326	0.11	+0.1
3,379,968	+		GFF3326	0.12	-1.7
3,379,971	-		GFF3326	0.12	-0.6
3,379,971	-		GFF3326	0.12	+0.8
3,379,971	-		GFF3326	0.12	-0.4
3,379,971	-		GFF3326	0.12	-0.4
3,379,971	-		GFF3326	0.12	+0.9
3,379,971	-		GFF3326	0.12	+1.4
3,379,971	-		GFF3326	0.12	-1.5
3,379,971	-		GFF3326	0.12	+0.8
3,379,971	-		GFF3326	0.12	+0.3
3,379,981	+		GFF3326	0.13	-1.0
3,379,981	+		GFF3326	0.13	+0.1
3,379,989	-		GFF3326	0.14	-1.4
3,379,989	-		GFF3326	0.14	-1.2
3,380,020	-		GFF3326	0.17	-0.7
3,380,020	-		GFF3326	0.17	+1.2
3,380,042	-		GFF3326	0.20	+1.1
3,380,075	-		GFF3326	0.23	+0.7
3,380,075	-		GFF3326	0.23	-1.8
3,380,112	+		GFF3326	0.28	+1.4
3,380,115	+		GFF3326	0.28	+1.5
3,380,115	+		GFF3326	0.28	-1.6
3,380,133	+		GFF3326	0.30	-0.4
3,380,147	+		GFF3326	0.31	-0.5
3,380,147	-		GFF3326	0.31	-0.3
3,380,147	-		GFF3326	0.31	+0.1
3,380,147	-		GFF3326	0.31	+1.4
3,380,169	+		GFF3326	0.34	-2.6
3,380,223	+		GFF3326	0.40	-1.5
3,380,228	+		GFF3326	0.40	-0.0
3,380,228	+		GFF3326	0.40	-0.0
3,380,236	-		GFF3326	0.41	-0.7
3,380,236	-		GFF3326	0.41	+0.1
3,380,236	-		GFF3326	0.41	-1.2
3,380,236	-		GFF3326	0.41	-1.4
3,380,236	-		GFF3326	0.41	-0.1
3,380,239	+		GFF3326	0.42	+0.6
3,380,250	+		GFF3326	0.43	+1.0
3,380,253	-		GFF3326	0.43	-0.8
3,380,270	-		GFF3326	0.45	-0.2
3,380,277	-		GFF3326	0.46	-0.3
3,380,287	-		GFF3326	0.47	-0.1
3,380,318	+		GFF3326	0.50	+0.6
3,380,326	+		GFF3326	0.51	-0.2
3,380,361	-		GFF3326	0.55	+0.4
3,380,361	-		GFF3326	0.55	-1.9
3,380,370	+		GFF3326	0.56	+0.3
3,380,377	-		GFF3326	0.57	+1.3
3,380,383	-		GFF3326	0.58	+0.0
3,380,383	-		GFF3326	0.58	-0.3
3,380,383	-		GFF3326	0.58	+1.4
3,380,386	+		GFF3326	0.58	-0.7
3,380,391	+		GFF3326	0.58	-1.1
3,380,391	+		GFF3326	0.58	+0.6
3,380,421	+		GFF3326	0.62	-0.1
3,380,421	+		GFF3326	0.62	+0.4
3,380,421	+		GFF3326	0.62	-0.0
3,380,421	+		GFF3326	0.62	-1.4
3,380,426	+		GFF3326	0.62	+1.7
3,380,426	+		GFF3326	0.62	-2.0
3,380,426	+		GFF3326	0.62	+1.8
3,380,426	+		GFF3326	0.62	+1.0
3,380,426	+		GFF3326	0.62	+0.6
3,380,429	-		GFF3326	0.63	-0.2
3,380,429	-		GFF3326	0.63	+0.3
3,380,429	-		GFF3326	0.63	-0.2
3,380,434	-		GFF3326	0.63	+0.5
3,380,434	-		GFF3326	0.63	-0.0
3,380,434	-		GFF3326	0.63	-0.5
3,380,434	-		GFF3326	0.63	+0.3
3,380,434	-		GFF3326	0.63	+1.2
3,380,434	-		GFF3326	0.63	+0.2
3,380,470	+		GFF3326	0.67	-1.0
3,380,478	-		GFF3326	0.68	+1.2
3,380,478	-		GFF3326	0.68	-1.8
3,380,479	+		GFF3326	0.68	-0.8
3,380,480	+		GFF3326	0.68	-0.8
3,380,487	-		GFF3326	0.69	+0.1
3,380,493	-		GFF3326	0.70	+1.1
3,380,527	-		GFF3326	0.74	-1.1
3,380,549	+		GFF3326	0.76	+0.4
3,380,549	+		GFF3326	0.76	-1.5
3,380,554	+		GFF3326	0.77	+1.3
3,380,557	-		GFF3326	0.77	-0.1
3,380,568	+		GFF3326	0.78	-0.6
3,380,572	-		GFF3326	0.79	-1.0
3,380,576	-		GFF3326	0.79	-0.7
3,380,578	-		GFF3326	0.79	-2.6
3,380,584	+		GFF3326	0.80	+0.5
3,380,589	+		GFF3326	0.80	+0.2
3,380,594	+		GFF3326	0.81	-0.4
3,380,594	+		GFF3326	0.81	-1.2
3,380,602	-		GFF3326	0.82	-0.2
3,380,622	+		GFF3326	0.84	-0.4
3,380,623	-		GFF3326	0.84	-0.4
3,380,625	-		GFF3326	0.84	-0.5
3,380,627	+		GFF3326	0.85	-1.5
3,380,627	+		GFF3326	0.85	-0.3
3,380,628	+		GFF3326	0.85	-1.4
3,380,628	+		GFF3326	0.85	-0.0
3,380,628	+		GFF3326	0.85	-0.1
3,380,628	+		GFF3326	0.85	+1.2
3,380,636	-		GFF3326	0.86	+0.6
3,380,636	-		GFF3326	0.86	-0.3
3,380,656	+		GFF3326	0.88	+1.0
3,380,664	-		GFF3326	0.89	-1.0
3,380,664	-		GFF3326	0.89	+0.2
3,380,664	-		GFF3326	0.89	+0.1
3,380,664	-		GFF3326	0.89	-0.4
3,380,672	-		GFF3326	0.90	-0.3
3,380,687	-				-0.3
3,380,688	-				-0.4
3,380,703	-				-0.2
3,380,762	-				+0.2
3,380,795	+				+0.6
3,380,798	-				-2.6
3,380,798	-				+0.9
3,380,798	-				-1.8
3,380,798	-				+0.7
3,380,807	+				-0.3
3,380,837	-		GFF3327	0.10	-0.1
3,380,838	-		GFF3327	0.10	+0.8