Strain Fitness in Sphingobium sp. HT1-2 around GFF3278

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,332,255	+		GFF3277	0.40	-0.5
3,332,255	+		GFF3277	0.40	-1.8
3,332,255	+		GFF3277	0.40	-2.1
3,332,255	+		GFF3277	0.40	-0.2
3,332,255	+		GFF3277	0.40	-0.4
3,332,255	+		GFF3277	0.40	-1.4
3,332,255	+		GFF3277	0.40	-3.1
3,332,258	+		GFF3277	0.40	-1.3
3,332,258	-		GFF3277	0.40	-3.2
3,332,260	+		GFF3277	0.40	-2.3
3,332,263	-		GFF3277	0.41	-1.5
3,332,263	-		GFF3277	0.41	-2.0
3,332,263	-		GFF3277	0.41	-1.3
3,332,263	-		GFF3277	0.41	-3.0
3,332,263	-		GFF3277	0.41	-1.8
3,332,263	-		GFF3277	0.41	-1.3
3,332,263	-		GFF3277	0.41	+0.9
3,332,263	-		GFF3277	0.41	-4.0
3,332,266	-		GFF3277	0.41	-1.4
3,332,270	+		GFF3277	0.41	-1.4
3,332,277	+		GFF3277	0.41	-1.4
3,332,278	-		GFF3277	0.41	-2.3
3,332,278	-		GFF3277	0.41	-1.4
3,332,278	-		GFF3277	0.41	-1.8
3,332,278	-		GFF3277	0.41	-1.8
3,332,280	-		GFF3277	0.42	-1.7
3,332,301	+		GFF3277	0.43	-0.3
3,332,328	-		GFF3277	0.45	-3.4
3,332,335	+		GFF3277	0.45	-1.8
3,332,335	+		GFF3277	0.45	-1.9
3,332,335	+		GFF3277	0.45	-1.4
3,332,335	+		GFF3277	0.45	-2.7
3,332,343	-		GFF3277	0.46	-1.0
3,332,343	-		GFF3277	0.46	-2.0
3,332,343	-		GFF3277	0.46	-1.4
3,332,343	-		GFF3277	0.46	-0.6
3,332,343	-		GFF3277	0.46	-1.4
3,332,345	+		GFF3277	0.46	-1.9
3,332,349	+		GFF3277	0.46	-2.5
3,332,352	-		GFF3277	0.46	-1.5
3,332,353	-		GFF3277	0.46	-3.0
3,332,353	-		GFF3277	0.46	-2.3
3,332,353	-		GFF3277	0.46	-2.1
3,332,353	-		GFF3277	0.46	-2.7
3,332,353	-		GFF3277	0.46	+0.2
3,332,354	+		GFF3277	0.46	-1.8
3,332,354	+		GFF3277	0.46	-0.6
3,332,355	+		GFF3277	0.46	-2.8
3,332,360	+		GFF3277	0.47	-2.3
3,332,368	-		GFF3277	0.47	-1.3
3,332,368	-		GFF3277	0.47	-2.2
3,332,370	-		GFF3277	0.47	-2.7
3,332,373	+		GFF3277	0.47	-2.4
3,332,375	-		GFF3277	0.48	-1.8
3,332,384	+		GFF3277	0.48	-1.7
3,332,403	+		GFF3277	0.49	-2.4
3,332,414	+		GFF3277	0.50	-2.6
3,332,452	+		GFF3277	0.52	-2.2
3,332,452	+		GFF3277	0.52	-1.3
3,332,461	+		GFF3277	0.53	-1.6
3,332,469	-		GFF3277	0.53	-3.4
3,332,506	-		GFF3277	0.56	-2.8
3,332,506	-		GFF3277	0.56	-1.9
3,332,507	+		GFF3277	0.56	-1.9
3,332,525	-		GFF3277	0.57	-1.0
3,332,543	-		GFF3277	0.58	-2.8
3,332,555	-		GFF3277	0.59	-2.6
3,332,559	+		GFF3277	0.59	-0.5
3,332,595	-		GFF3277	0.61	-0.3
3,332,615	-		GFF3277	0.63	-1.6
3,332,703	-		GFF3277	0.68	-2.0
3,332,709	+		GFF3277	0.69	-1.8
3,332,719	+		GFF3277	0.69	-1.7
3,332,719	+		GFF3277	0.69	-2.0
3,332,719	+		GFF3277	0.69	-0.7
3,332,740	-		GFF3277	0.70	-2.0
3,332,741	-		GFF3277	0.71	-1.6
3,332,754	+		GFF3277	0.71	-2.1
3,332,760	+		GFF3277	0.72	-1.8
3,332,768	-		GFF3277	0.72	-3.0
3,332,768	-		GFF3277	0.72	-2.6
3,332,796	+		GFF3277	0.74	-1.9
3,332,796	+		GFF3277	0.74	+1.0
3,332,812	-		GFF3277	0.75	-0.5
3,332,837	+		GFF3277	0.77	-1.9
3,332,845	-		GFF3277	0.77	-1.7
3,332,863	-		GFF3277	0.78	-1.9
3,332,895	+		GFF3277	0.80	-1.9
3,332,906	+		GFF3277	0.81	-2.0
3,332,934	+		GFF3277	0.83	-3.3
3,332,934	+		GFF3277	0.83	-1.9
3,332,939	+		GFF3277	0.83	-2.3
3,332,942	-		GFF3277	0.83	-1.8
3,332,942	-		GFF3277	0.83	-1.9
3,332,942	-		GFF3277	0.83	-3.4
3,332,942	-		GFF3277	0.83	-1.6
3,332,945	-		GFF3277	0.83	-2.0
3,332,947	+		GFF3277	0.83	-4.0
3,332,979	+		GFF3277	0.85	-0.3
3,332,989	+		GFF3277	0.86	-1.5
3,332,998	+		GFF3277	0.87	-2.0
3,333,011	-		GFF3277	0.88	-1.4
3,333,015	-		GFF3277	0.88	-1.5
3,333,051	+				-1.4
3,333,084	+				-1.3
3,333,084	+				-1.7
3,333,102	+				+0.1
3,333,102	+				-0.3
3,333,138	-				-2.0
3,333,164	-				-2.0
3,333,177	+				-1.5
3,333,177	+				-1.8
3,333,179	+				-3.5
3,333,184	-				-2.4
3,333,185	-				-1.0
3,333,203	+				+0.8
3,333,212	-				-1.6
3,333,218	-				-0.1
3,333,260	+		GFF3278	0.25	+0.6
3,333,260	+		GFF3278	0.25	+0.7
3,333,268	-		GFF3278	0.31	+1.0
3,333,351	+				+0.1
3,333,351	+				-1.2
3,333,359	-				-0.1
3,333,359	-				-1.8
3,333,364	-				-0.2
3,333,386	+				-0.1
3,333,394	-				-1.4
3,333,394	-				-1.8
3,333,405	-				-0.4
3,333,405	-				+0.1
3,333,428	+				-1.9
3,333,471	+				+0.1
3,333,472	+		GFF3279	0.10	+0.1
3,333,478	+		GFF3279	0.12	-0.1
3,333,479	-		GFF3279	0.12	+1.9
3,333,486	-		GFF3279	0.14	+0.6
3,333,486	-		GFF3279	0.14	+0.3
3,333,488	+		GFF3279	0.15	-0.7
3,333,496	-		GFF3279	0.17	-0.3
3,333,496	-		GFF3279	0.17	-0.4
3,333,541	+		GFF3279	0.31	-3.0
3,333,583	+		GFF3279	0.44	+0.1
3,333,583	+		GFF3279	0.44	+0.2
3,333,591	-		GFF3279	0.46	-0.2
3,333,591	-		GFF3279	0.46	+0.4
3,333,601	+		GFF3279	0.49	-1.6
3,333,609	-		GFF3279	0.51	+0.7
3,333,614	-		GFF3279	0.53	+1.7
3,333,619	-		GFF3279	0.54	+1.0
3,333,633	-		GFF3279	0.59	-0.0
3,333,648	-		GFF3279	0.63	-1.4
3,333,669	-		GFF3279	0.69	-0.2
3,333,669	-		GFF3279	0.69	-0.1
3,333,688	+		GFF3279	0.75	-0.3
3,333,705	+		GFF3279	0.80	+0.9
3,333,717	+		GFF3279	0.84	-1.1
3,333,717	+		GFF3279	0.84	-1.3
3,333,725	-		GFF3279	0.86	-0.4
3,333,725	-		GFF3279	0.86	+0.1
3,333,725	-		GFF3279	0.86	+0.0
3,333,725	-		GFF3279	0.86	-0.7
3,333,732	+		GFF3279	0.88	-1.9
3,333,759	+				+0.3
3,333,764	+				-0.6
3,333,769	+				-0.8
3,333,769	+				-1.6
3,333,772	-				-2.0
3,333,772	-				-0.8
3,333,777	-				+0.3
3,333,813	+				-0.6
3,333,813	+				-1.7
3,333,815	+				+0.0
3,333,815	+				-1.0
3,333,823	-				+0.1
3,333,828	-				+0.3
3,333,833	+				-0.6
3,333,833	+				+0.7
3,333,833	-				-0.2
3,333,845	+				+0.0
3,333,856	+				-0.4
3,333,864	+				-2.7
3,333,865	+				+0.9
3,333,893	+				+1.8
3,333,893	+				-0.7
3,333,894	-				+0.1
3,333,901	-				-0.3
3,333,901	-				+0.5
3,333,901	-				-0.4
3,333,901	-				+0.4
3,333,901	-				-0.3
3,333,933	+				-0.6
3,333,942	+				+0.3
3,333,968	+				-0.4
3,333,978	-				+0.0
3,333,986	+				-0.6
3,333,986	+				-0.5
3,333,986	+				-0.9
3,333,986	+				-1.9
3,333,991	+				+0.2
3,333,991	+				-0.5
3,333,994	-				+0.3
3,333,999	-				-0.2
3,333,999	-				-1.7
3,333,999	-				-1.4
3,334,012	+				-0.6
3,334,026	-				+0.2
3,334,096	+				-0.6
3,334,161	+		GFF3280	0.14	+0.8
3,334,162	+		GFF3280	0.14	+0.6
3,334,170	-		GFF3280	0.14	-2.5
3,334,174	-		GFF3280	0.15	+0.7
3,334,203	-		GFF3280	0.17	-2.6
3,334,225	+		GFF3280	0.18	-1.4
3,334,247	+		GFF3280	0.19	+1.1
3,334,249	+		GFF3280	0.20	-0.2
3,334,249	+		GFF3280	0.20	+0.4
3,334,255	-		GFF3280	0.20	+0.5
3,334,257	-		GFF3280	0.20	+0.5
3,334,257	-		GFF3280	0.20	-2.0
3,334,257	-		GFF3280	0.20	+0.4
3,334,285	-		GFF3280	0.22	+1.4
3,334,297	+		GFF3280	0.23	-0.8
3,334,297	+		GFF3280	0.23	+0.5
3,334,302	+		GFF3280	0.23	-0.4
3,334,302	+		GFF3280	0.23	-0.8
3,334,305	-		GFF3280	0.23	+1.6
3,334,305	-		GFF3280	0.23	+0.8
3,334,305	-		GFF3280	0.23	+0.4
3,334,305	-		GFF3280	0.23	-1.0
3,334,310	-		GFF3280	0.24	-0.2
3,334,310	-		GFF3280	0.24	+0.1
3,334,310	-		GFF3280	0.24	+0.1
3,334,328	+		GFF3280	0.25	-0.7
3,334,328	+		GFF3280	0.25	-2.3
3,334,328	+		GFF3280	0.25	+0.8
3,334,328	+		GFF3280	0.25	-2.7
3,334,328	+		GFF3280	0.25	-2.3
3,334,328	+		GFF3280	0.25	-1.6
3,334,335	-		GFF3280	0.25	+0.4
3,334,336	-		GFF3280	0.25	+0.9
3,334,336	-		GFF3280	0.25	+0.8
3,334,336	-		GFF3280	0.25	-0.2
3,334,336	-		GFF3280	0.25	-1.0
3,334,336	-		GFF3280	0.25	-1.0
3,334,336	-		GFF3280	0.25	+1.0
3,334,353	+		GFF3280	0.26	-1.6