Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF322 and GFF323 are separated by 178 nucleotides GFF323 and GFF324 are separated by 7 nucleotides
GFF322 - Superoxide dismutase [Fe] (EC 1.15.1.1), at 316,404 to 317,018
GFF322
GFF323 - hypothetical protein, at 317,197 to 317,634
GFF323
GFF324 - hypothetical protein, at 317,642 to 319,171
GFF324
Position (kb) 317
318 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 316.199 kb on + strand at 316.202 kb on - strand at 316.207 kb on - strand at 316.219 kb on + strand at 316.226 kb on + strand at 316.227 kb on - strand at 316.227 kb on - strand at 316.234 kb on - strand at 316.300 kb on + strand at 316.300 kb on + strand at 316.308 kb on + strand at 316.308 kb on + strand at 316.317 kb on - strand at 316.317 kb on - strand at 316.326 kb on - strand at 316.342 kb on - strand at 316.361 kb on + strand at 316.376 kb on + strand at 317.027 kb on + strand at 317.028 kb on + strand at 317.028 kb on + strand at 317.033 kb on + strand at 317.033 kb on + strand at 317.036 kb on - strand at 317.036 kb on - strand at 317.038 kb on + strand at 317.041 kb on - strand at 317.046 kb on - strand at 317.046 kb on - strand at 317.051 kb on - strand at 317.051 kb on - strand at 317.061 kb on + strand at 317.061 kb on + strand at 317.061 kb on + strand at 317.066 kb on + strand at 317.069 kb on - strand at 317.069 kb on - strand at 317.076 kb on + strand at 317.083 kb on + strand at 317.084 kb on + strand at 317.094 kb on + strand at 317.109 kb on + strand at 317.123 kb on + strand at 317.136 kb on - strand at 317.144 kb on - strand at 317.146 kb on - strand at 317.157 kb on + strand at 317.173 kb on - strand at 317.177 kb on + strand at 317.177 kb on + strand at 317.177 kb on + strand at 317.177 kb on + strand at 317.177 kb on + strand at 317.177 kb on + strand at 317.180 kb on - strand at 317.182 kb on + strand at 317.184 kb on + strand at 317.185 kb on - strand at 317.185 kb on - strand at 317.185 kb on - strand at 317.185 kb on - strand at 317.190 kb on - strand at 317.209 kb on - strand at 317.209 kb on - strand at 317.209 kb on - strand at 317.223 kb on + strand at 317.236 kb on + strand at 317.246 kb on + strand, within GFF323 at 317.249 kb on - strand, within GFF323 at 317.273 kb on + strand, within GFF323 at 317.273 kb on + strand, within GFF323 at 317.283 kb on + strand, within GFF323 at 317.283 kb on + strand, within GFF323 at 317.291 kb on - strand, within GFF323 at 317.299 kb on + strand, within GFF323 at 317.325 kb on + strand, within GFF323 at 317.326 kb on + strand, within GFF323 at 317.333 kb on - strand, within GFF323 at 317.357 kb on - strand, within GFF323 at 317.358 kb on + strand, within GFF323 at 317.358 kb on + strand, within GFF323 at 317.358 kb on + strand, within GFF323 at 317.358 kb on + strand, within GFF323 at 317.358 kb on + strand, within GFF323 at 317.358 kb on + strand, within GFF323 at 317.358 kb on + strand, within GFF323 at 317.366 kb on - strand, within GFF323 at 317.366 kb on - strand, within GFF323 at 317.366 kb on - strand, within GFF323 at 317.366 kb on - strand, within GFF323 at 317.366 kb on - strand, within GFF323 at 317.366 kb on - strand, within GFF323 at 317.366 kb on - strand, within GFF323 at 317.366 kb on - strand, within GFF323 at 317.383 kb on + strand, within GFF323 at 317.423 kb on - strand, within GFF323 at 317.440 kb on + strand, within GFF323 at 317.447 kb on - strand, within GFF323 at 317.447 kb on - strand, within GFF323 at 317.457 kb on + strand, within GFF323 at 317.457 kb on + strand, within GFF323 at 317.466 kb on + strand, within GFF323 at 317.474 kb on - strand, within GFF323 at 317.479 kb on - strand, within GFF323 at 317.489 kb on + strand, within GFF323 at 317.497 kb on - strand, within GFF323 at 317.534 kb on - strand, within GFF323 at 317.537 kb on + strand, within GFF323 at 317.545 kb on - strand, within GFF323 at 317.545 kb on - strand, within GFF323 at 317.555 kb on + strand, within GFF323 at 317.555 kb on + strand, within GFF323 at 317.555 kb on + strand, within GFF323 at 317.563 kb on - strand, within GFF323 at 317.563 kb on - strand, within GFF323 at 317.563 kb on - strand, within GFF323 at 317.564 kb on + strand, within GFF323 at 317.586 kb on - strand, within GFF323 at 317.591 kb on + strand at 317.591 kb on + strand at 317.591 kb on + strand at 317.591 kb on + strand at 317.591 kb on + strand at 317.591 kb on + strand at 317.591 kb on + strand at 317.591 kb on + strand at 317.599 kb on - strand at 317.599 kb on - strand at 317.599 kb on - strand at 317.599 kb on - strand at 317.599 kb on - strand at 317.649 kb on + strand at 317.649 kb on + strand at 317.649 kb on + strand at 317.671 kb on + strand at 317.671 kb on + strand at 317.671 kb on + strand at 317.671 kb on + strand at 317.671 kb on + strand at 317.671 kb on + strand at 317.679 kb on - strand at 317.692 kb on - strand at 317.692 kb on - strand at 317.700 kb on + strand at 317.700 kb on + strand at 317.700 kb on + strand at 317.700 kb on + strand at 317.700 kb on + strand at 317.708 kb on - strand at 317.708 kb on - strand at 317.708 kb on - strand at 317.708 kb on - strand at 317.708 kb on - strand at 317.708 kb on - strand at 317.708 kb on - strand at 317.708 kb on - strand at 317.708 kb on - strand at 317.732 kb on - strand at 317.732 kb on - strand at 317.734 kb on - strand at 317.773 kb on + strand at 317.775 kb on + strand at 317.783 kb on + strand at 317.783 kb on + strand at 317.796 kb on - strand, within GFF324 at 317.866 kb on + strand, within GFF324 at 317.874 kb on - strand, within GFF324 at 317.879 kb on + strand, within GFF324 at 317.889 kb on - strand, within GFF324 at 317.910 kb on + strand, within GFF324 at 317.910 kb on + strand, within GFF324 at 317.918 kb on - strand, within GFF324 at 317.918 kb on - strand, within GFF324 at 317.918 kb on - strand, within GFF324 at 317.918 kb on - strand, within GFF324 at 317.918 kb on - strand, within GFF324 at 317.919 kb on + strand, within GFF324 at 317.919 kb on + strand, within GFF324 at 317.919 kb on + strand, within GFF324 at 317.924 kb on + strand, within GFF324 at 317.927 kb on - strand, within GFF324 at 317.928 kb on - strand, within GFF324 at 317.938 kb on + strand, within GFF324 at 317.943 kb on + strand, within GFF324 at 317.944 kb on + strand, within GFF324 at 317.944 kb on + strand, within GFF324 at 317.967 kb on - strand, within GFF324 at 317.972 kb on - strand, within GFF324 at 317.988 kb on - strand, within GFF324 at 317.993 kb on + strand, within GFF324 at 317.999 kb on - strand, within GFF324 at 318.017 kb on + strand, within GFF324 at 318.037 kb on + strand, within GFF324 at 318.040 kb on + strand, within GFF324 at 318.040 kb on + strand, within GFF324 at 318.040 kb on + strand, within GFF324 at 318.040 kb on + strand, within GFF324 at 318.040 kb on + strand, within GFF324 at 318.048 kb on - strand, within GFF324 at 318.048 kb on - strand, within GFF324 at 318.048 kb on - strand, within GFF324 at 318.055 kb on - strand, within GFF324 at 318.060 kb on + strand, within GFF324 at 318.075 kb on + strand, within GFF324 at 318.078 kb on - strand, within GFF324 at 318.083 kb on - strand, within GFF324 at 318.083 kb on - strand, within GFF324 at 318.083 kb on - strand, within GFF324 at 318.151 kb on - strand, within GFF324 at 318.166 kb on + strand, within GFF324 at 318.166 kb on + strand, within GFF324 at 318.166 kb on - strand, within GFF324 at 318.192 kb on - strand, within GFF324 at 318.196 kb on + strand, within GFF324 at 318.206 kb on + strand, within GFF324 at 318.211 kb on + strand, within GFF324 at 318.215 kb on - strand, within GFF324 at 318.219 kb on - strand, within GFF324 at 318.229 kb on - strand, within GFF324 at 318.229 kb on - strand, within GFF324 at 318.253 kb on + strand, within GFF324 at 318.253 kb on + strand, within GFF324 at 318.253 kb on + strand, within GFF324 at 318.261 kb on - strand, within GFF324 at 318.309 kb on - strand, within GFF324 at 318.317 kb on + strand, within GFF324 at 318.325 kb on - strand, within GFF324 at 318.335 kb on - strand, within GFF324 at 318.336 kb on + strand, within GFF324 at 318.346 kb on - strand, within GFF324 at 318.346 kb on - strand, within GFF324 at 318.355 kb on + strand, within GFF324 at 318.355 kb on + strand, within GFF324 at 318.356 kb on - strand, within GFF324 at 318.368 kb on + strand, within GFF324 at 318.409 kb on - strand, within GFF324 at 318.434 kb on - strand, within GFF324 at 318.434 kb on - strand, within GFF324 at 318.451 kb on + strand, within GFF324 at 318.459 kb on + strand, within GFF324 at 318.485 kb on + strand, within GFF324 at 318.491 kb on + strand, within GFF324 at 318.491 kb on + strand, within GFF324 at 318.491 kb on + strand, within GFF324 at 318.491 kb on + strand, within GFF324 at 318.499 kb on - strand, within GFF324 at 318.543 kb on - strand, within GFF324 at 318.550 kb on + strand, within GFF324 at 318.550 kb on + strand, within GFF324 at 318.550 kb on + strand, within GFF324 at 318.596 kb on - strand, within GFF324 at 318.596 kb on - strand, within GFF324 at 318.599 kb on + strand, within GFF324 at 318.602 kb on - strand, within GFF324 at 318.609 kb on + strand, within GFF324 at 318.619 kb on + strand, within GFF324 at 318.627 kb on + strand, within GFF324 at 318.627 kb on + strand, within GFF324
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 316,199 + -0.2 316,202 - +0.8 316,207 - -3.0 316,219 + +0.3 316,226 + -0.3 316,227 - -0.1 316,227 - +0.9 316,234 - -0.3 316,300 + -1.7 316,300 + -0.3 316,308 + +1.8 316,308 + +0.1 316,317 - +1.5 316,317 - -2.0 316,326 - -1.4 316,342 - -0.6 316,361 + -2.9 316,376 + +1.3 317,027 + -0.2 317,028 + -0.5 317,028 + +0.1 317,033 + -0.2 317,033 + -1.1 317,036 - +0.3 317,036 - -1.7 317,038 + +1.6 317,041 - -1.8 317,046 - -0.7 317,046 - -1.1 317,051 - -0.9 317,051 - -1.0 317,061 + +0.3 317,061 + +1.0 317,061 + -1.9 317,066 + -3.1 317,069 - -0.5 317,069 - +0.0 317,076 + -0.3 317,083 + -2.6 317,084 + +0.9 317,094 + -0.0 317,109 + +0.1 317,123 + +0.3 317,136 - +0.4 317,144 - -1.0 317,146 - -2.0 317,157 + -0.5 317,173 - -1.3 317,177 + +0.0 317,177 + +0.5 317,177 + -0.3 317,177 + +1.0 317,177 + -0.8 317,177 + -0.8 317,180 - +0.8 317,182 + +0.2 317,184 + +0.4 317,185 - -0.3 317,185 - -0.6 317,185 - -1.8 317,185 - +0.9 317,190 - -1.7 317,209 - -3.2 317,209 - -1.9 317,209 - -0.3 317,223 + +0.0 317,236 + -0.9 317,246 + GFF323 0.11 +0.2 317,249 - GFF323 0.12 -0.0 317,273 + GFF323 0.17 -1.0 317,273 + GFF323 0.17 +0.6 317,283 + GFF323 0.20 -1.1 317,283 + GFF323 0.20 -1.5 317,291 - GFF323 0.21 -0.1 317,299 + GFF323 0.23 +0.5 317,325 + GFF323 0.29 -2.3 317,326 + GFF323 0.29 -2.0 317,333 - GFF323 0.31 -1.6 317,357 - GFF323 0.37 -1.9 317,358 + GFF323 0.37 -0.6 317,358 + GFF323 0.37 +0.3 317,358 + GFF323 0.37 +1.1 317,358 + GFF323 0.37 +0.1 317,358 + GFF323 0.37 +0.2 317,358 + GFF323 0.37 -0.3 317,358 + GFF323 0.37 -0.1 317,366 - GFF323 0.39 -1.8 317,366 - GFF323 0.39 -1.2 317,366 - GFF323 0.39 +1.0 317,366 - GFF323 0.39 +0.2 317,366 - GFF323 0.39 +0.2 317,366 - GFF323 0.39 -1.3 317,366 - GFF323 0.39 -1.7 317,366 - GFF323 0.39 -0.0 317,383 + GFF323 0.42 -0.3 317,423 - GFF323 0.52 -0.6 317,440 + GFF323 0.55 +0.8 317,447 - GFF323 0.57 -0.1 317,447 - GFF323 0.57 +0.0 317,457 + GFF323 0.59 -1.9 317,457 + GFF323 0.59 -1.8 317,466 + GFF323 0.61 -0.3 317,474 - GFF323 0.63 +0.3 317,479 - GFF323 0.64 -0.4 317,489 + GFF323 0.67 +0.8 317,497 - GFF323 0.68 +0.3 317,534 - GFF323 0.77 -0.8 317,537 + GFF323 0.78 +0.2 317,545 - GFF323 0.79 -0.5 317,545 - GFF323 0.79 +0.3 317,555 + GFF323 0.82 +0.9 317,555 + GFF323 0.82 -1.7 317,555 + GFF323 0.82 -1.9 317,563 - GFF323 0.84 -1.0 317,563 - GFF323 0.84 +0.5 317,563 - GFF323 0.84 +0.9 317,564 + GFF323 0.84 +0.6 317,586 - GFF323 0.89 -1.1 317,591 + +1.2 317,591 + +1.0 317,591 + +0.7 317,591 + -3.1 317,591 + -1.3 317,591 + +0.6 317,591 + -0.8 317,591 + -0.6 317,599 - +0.6 317,599 - -0.8 317,599 - +0.2 317,599 - +0.4 317,599 - +0.9 317,649 + +0.4 317,649 + +0.2 317,649 + +0.4 317,671 + -1.2 317,671 + +1.1 317,671 + +0.4 317,671 + +0.9 317,671 + +0.6 317,671 + -0.3 317,679 - -0.2 317,692 - -0.6 317,692 - -1.5 317,700 + +0.0 317,700 + -1.2 317,700 + +0.4 317,700 + -0.3 317,700 + -0.2 317,708 - -0.0 317,708 - -0.3 317,708 - -0.6 317,708 - -0.0 317,708 - -0.8 317,708 - -0.3 317,708 - -1.2 317,708 - +0.4 317,708 - -1.7 317,732 - +0.2 317,732 - -2.8 317,734 - -1.3 317,773 + +0.6 317,775 + +0.0 317,783 + -0.1 317,783 + +1.1 317,796 - GFF324 0.10 +0.4 317,866 + GFF324 0.15 -0.9 317,874 - GFF324 0.15 -1.0 317,879 + GFF324 0.15 +0.4 317,889 - GFF324 0.16 -0.8 317,910 + GFF324 0.18 +0.1 317,910 + GFF324 0.18 -0.5 317,918 - GFF324 0.18 -1.6 317,918 - GFF324 0.18 +1.0 317,918 - GFF324 0.18 +0.3 317,918 - GFF324 0.18 -0.9 317,918 - GFF324 0.18 -1.5 317,919 + GFF324 0.18 -0.8 317,919 + GFF324 0.18 +0.4 317,919 + GFF324 0.18 -0.3 317,924 + GFF324 0.18 -0.3 317,927 - GFF324 0.19 +0.2 317,928 - GFF324 0.19 +0.9 317,938 + GFF324 0.19 -0.7 317,943 + GFF324 0.20 +1.2 317,944 + GFF324 0.20 -0.9 317,944 + GFF324 0.20 +0.5 317,967 - GFF324 0.21 -0.1 317,972 - GFF324 0.22 +1.0 317,988 - GFF324 0.23 +0.3 317,993 + GFF324 0.23 +0.2 317,999 - GFF324 0.23 +0.4 318,017 + GFF324 0.25 +0.2 318,037 + GFF324 0.26 +0.7 318,040 + GFF324 0.26 -1.5 318,040 + GFF324 0.26 -0.9 318,040 + GFF324 0.26 +0.4 318,040 + GFF324 0.26 -1.1 318,040 + GFF324 0.26 -1.0 318,048 - GFF324 0.27 +1.1 318,048 - GFF324 0.27 -0.5 318,048 - GFF324 0.27 -1.4 318,055 - GFF324 0.27 +0.1 318,060 + GFF324 0.27 -1.4 318,075 + GFF324 0.28 +0.3 318,078 - GFF324 0.28 -1.7 318,083 - GFF324 0.29 -0.5 318,083 - GFF324 0.29 +0.2 318,083 - GFF324 0.29 +0.5 318,151 - GFF324 0.33 -0.2 318,166 + GFF324 0.34 +0.1 318,166 + GFF324 0.34 -0.7 318,166 - GFF324 0.34 -0.5 318,192 - GFF324 0.36 -0.9 318,196 + GFF324 0.36 +0.3 318,206 + GFF324 0.37 -1.0 318,211 + GFF324 0.37 -2.1 318,215 - GFF324 0.37 -0.3 318,219 - GFF324 0.38 +0.5 318,229 - GFF324 0.38 +0.1 318,229 - GFF324 0.38 -1.7 318,253 + GFF324 0.40 +0.8 318,253 + GFF324 0.40 -1.5 318,253 + GFF324 0.40 +0.2 318,261 - GFF324 0.40 -0.1 318,309 - GFF324 0.44 +0.2 318,317 + GFF324 0.44 -0.1 318,325 - GFF324 0.45 +0.1 318,335 - GFF324 0.45 +0.1 318,336 + GFF324 0.45 -0.1 318,346 - GFF324 0.46 +0.4 318,346 - GFF324 0.46 +0.8 318,355 + GFF324 0.47 -0.2 318,355 + GFF324 0.47 -1.5 318,356 - GFF324 0.47 -1.1 318,368 + GFF324 0.47 -1.9 318,409 - GFF324 0.50 -0.1 318,434 - GFF324 0.52 -0.4 318,434 - GFF324 0.52 +0.5 318,451 + GFF324 0.53 -0.7 318,459 + GFF324 0.53 -1.8 318,485 + GFF324 0.55 +0.1 318,491 + GFF324 0.55 +1.4 318,491 + GFF324 0.55 +0.5 318,491 + GFF324 0.55 +0.5 318,491 + GFF324 0.55 -0.7 318,499 - GFF324 0.56 -2.3 318,543 - GFF324 0.59 +0.9 318,550 + GFF324 0.59 -0.4 318,550 + GFF324 0.59 +0.7 318,550 + GFF324 0.59 +0.5 318,596 - GFF324 0.62 +0.4 318,596 - GFF324 0.62 -0.2 318,599 + GFF324 0.63 -0.8 318,602 - GFF324 0.63 +1.2 318,609 + GFF324 0.63 -0.8 318,619 + GFF324 0.64 -0.6 318,627 + GFF324 0.64 -0.6 318,627 + GFF324 0.64 +0.0
Or see this region's nucleotide sequence