Strain Fitness in Sphingobium sp. HT1-2 around GFF3217

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,272,421	+				+0.3
3,272,431	+				-0.4
3,272,439	-				-0.9
3,272,455	+				+0.8
3,272,486	-				+0.0
3,272,498	-				+0.0
3,272,757	+				-1.2
3,272,797	-				-2.4
3,272,801	+				-0.6
3,272,805	+				+0.5
3,272,813	-				-0.4
3,272,814	+				-0.9
3,272,814	+				+1.2
3,272,837	+				+0.1
3,272,863	+		GFF3216	0.14	-2.2
3,272,905	+		GFF3216	0.21	-0.6
3,272,905	+		GFF3216	0.21	-1.4
3,272,913	-		GFF3216	0.23	-0.1
3,272,913	-		GFF3216	0.23	-1.2
3,272,915	-		GFF3216	0.23	-1.0
3,272,988	-		GFF3216	0.35	-0.6
3,272,993	-		GFF3216	0.36	-0.7
3,273,019	-		GFF3216	0.41	+1.8
3,273,024	-		GFF3216	0.41	-0.4
3,273,040	+		GFF3216	0.44	+0.2
3,273,040	+		GFF3216	0.44	+0.2
3,273,040	+		GFF3216	0.44	+0.7
3,273,041	+		GFF3216	0.44	-1.2
3,273,041	+		GFF3216	0.44	-0.4
3,273,049	-		GFF3216	0.46	+1.7
3,273,049	-		GFF3216	0.46	-0.7
3,273,051	+		GFF3216	0.46	+1.1
3,273,051	+		GFF3216	0.46	-0.5
3,273,059	-		GFF3216	0.47	-0.6
3,273,059	-		GFF3216	0.47	+0.8
3,273,098	+		GFF3216	0.54	-0.0
3,273,101	-		GFF3216	0.55	-0.7
3,273,111	-		GFF3216	0.56	+0.4
3,273,117	+		GFF3216	0.57	-0.7
3,273,117	+		GFF3216	0.57	-0.4
3,273,122	+		GFF3216	0.58	-0.4
3,273,126	+		GFF3216	0.59	+0.4
3,273,131	+		GFF3216	0.60	-2.1
3,273,134	+		GFF3216	0.60	+0.4
3,273,136	+		GFF3216	0.61	+0.9
3,273,162	-		GFF3216	0.65	-0.5
3,273,201	+		GFF3216	0.72	-1.4
3,273,206	+		GFF3216	0.72	+0.6
3,273,206	+		GFF3216	0.72	-0.2
3,273,206	+		GFF3216	0.72	+0.5
3,273,206	+		GFF3216	0.72	-0.5
3,273,209	-		GFF3216	0.73	+0.3
3,273,211	+		GFF3216	0.73	+0.6
3,273,211	+		GFF3216	0.73	+0.4
3,273,211	+		GFF3216	0.73	+1.6
3,273,211	+		GFF3216	0.73	+1.6
3,273,214	-		GFF3216	0.74	+0.2
3,273,214	-		GFF3216	0.74	+0.3
3,273,214	-		GFF3216	0.74	+0.2
3,273,214	-		GFF3216	0.74	-1.8
3,273,214	-		GFF3216	0.74	+1.0
3,273,219	-		GFF3216	0.75	+1.0
3,273,219	-		GFF3216	0.75	-1.8
3,273,233	+		GFF3216	0.77	-1.5
3,273,233	+		GFF3216	0.77	-0.6
3,273,233	+		GFF3216	0.77	-2.0
3,273,233	+		GFF3216	0.77	+1.4
3,273,233	+		GFF3216	0.77	-1.3
3,273,233	+		GFF3216	0.77	+1.1
3,273,233	+		GFF3216	0.77	-1.0
3,273,233	+		GFF3216	0.77	-0.4
3,273,233	+		GFF3216	0.77	+0.3
3,273,233	+		GFF3216	0.77	-0.3
3,273,233	+		GFF3216	0.77	-0.1
3,273,233	+		GFF3216	0.77	-1.1
3,273,233	+		GFF3216	0.77	-0.4
3,273,233	+		GFF3216	0.77	-0.9
3,273,241	-		GFF3216	0.78	-0.8
3,273,241	-		GFF3216	0.78	-1.7
3,273,241	-		GFF3216	0.78	-0.9
3,273,241	-		GFF3216	0.78	-0.4
3,273,241	-		GFF3216	0.78	-2.3
3,273,241	-		GFF3216	0.78	-1.1
3,273,241	-		GFF3216	0.78	-0.2
3,273,241	-		GFF3216	0.78	+0.1
3,273,241	-		GFF3216	0.78	-1.4
3,273,241	-		GFF3216	0.78	+0.5
3,273,241	-		GFF3216	0.78	-0.7
3,273,241	-		GFF3216	0.78	-0.6
3,273,246	+		GFF3216	0.79	+0.9
3,273,256	+		GFF3216	0.81	+0.9
3,273,256	+		GFF3216	0.81	-0.9
3,273,256	+		GFF3216	0.81	+0.1
3,273,266	+		GFF3216	0.83	-0.8
3,273,266	+		GFF3216	0.83	-1.4
3,273,266	+		GFF3216	0.83	+1.5
3,273,272	-		GFF3216	0.84	+1.0
3,273,276	+		GFF3216	0.84	+0.3
3,273,276	+		GFF3216	0.84	-0.8
3,273,284	-		GFF3216	0.86	-1.1
3,273,284	-		GFF3216	0.86	+0.2
3,273,322	+				-0.1
3,273,322	+				-1.7
3,273,322	+				-0.9
3,273,322	+				+1.2
3,273,322	+				-0.1
3,273,330	-				-1.6
3,273,330	-				-1.9
3,273,330	-				-0.5
3,273,330	-				-0.7
3,273,330	-				+1.2
3,273,330	-				+0.9
3,273,330	-				+0.9
3,273,334	+				+1.2
3,273,339	+				-0.2
3,273,341	+				-0.4
3,273,341	+				+0.2
3,273,341	+				-0.4
3,273,342	-				+0.6
3,273,347	-				-1.5
3,273,347	-				+0.6
3,273,349	-				+0.4
3,273,349	-				-0.1
3,273,349	-				-0.1
3,273,380	-				-0.4
3,273,399	+				+0.1
3,273,410	-				+0.6
3,273,447	+				+0.6
3,273,447	+				+0.1
3,273,457	+				-1.2
3,273,457	+				-0.4
3,273,514	+				+0.6
3,273,537	+		GFF3217	0.12	-0.2
3,273,537	+		GFF3217	0.12	-1.2
3,273,545	-		GFF3217	0.13	-0.5
3,273,545	-		GFF3217	0.13	-0.4
3,273,555	-		GFF3217	0.14	+0.2
3,273,559	-		GFF3217	0.14	-1.8
3,273,567	-		GFF3217	0.15	+0.2
3,273,588	+		GFF3217	0.17	-0.2
3,273,604	+		GFF3217	0.19	+1.1
3,273,612	-		GFF3217	0.20	-0.4
3,273,659	+		GFF3217	0.24	-0.7
3,273,721	-		GFF3217	0.31	-0.9
3,273,733	+		GFF3217	0.32	-1.7
3,273,733	+		GFF3217	0.32	-1.6
3,273,736	-		GFF3217	0.32	-1.7
3,273,741	-		GFF3217	0.33	+1.5
3,273,741	-		GFF3217	0.33	-0.6
3,273,741	-		GFF3217	0.33	-1.7
3,273,741	-		GFF3217	0.33	+0.2
3,273,797	+		GFF3217	0.38	-1.2
3,273,813	+		GFF3217	0.40	+0.2
3,273,818	+		GFF3217	0.41	+0.4
3,273,831	+		GFF3217	0.42	-0.1
3,273,895	-		GFF3217	0.48	-1.2
3,273,906	+		GFF3217	0.49	+0.4
3,273,906	+		GFF3217	0.49	+0.1
3,273,913	-		GFF3217	0.50	-0.9
3,273,965	-		GFF3217	0.55	-1.2
3,273,970	-		GFF3217	0.56	-2.4
3,274,019	-		GFF3217	0.61	+0.2
3,274,020	+		GFF3217	0.61	+0.5
3,274,030	+		GFF3217	0.62	+0.4
3,274,038	-		GFF3217	0.63	+1.7
3,274,052	+		GFF3217	0.64	-1.2
3,274,067	+		GFF3217	0.66	+0.8
3,274,122	+		GFF3217	0.71	-0.4
3,274,198	+		GFF3217	0.79	-0.6
3,274,271	-		GFF3217	0.86	-1.2
3,274,322	-				-2.3
3,274,379	+				-0.4
3,274,379	+				-1.3
3,274,393	-				-0.1
3,274,401	+				-0.4
3,274,401	+				-0.0
3,274,401	+				+0.6
3,274,409	-				-0.7
3,274,423	+		GFF3218	0.14	-1.9
3,274,431	-		GFF3218	0.18	-0.4
3,274,443	+		GFF3218	0.24	-0.5
3,274,474	-		GFF3218	0.40	-0.1
3,274,474	-		GFF3218	0.40	-3.0
3,274,489	+		GFF3218	0.48	-0.9
3,274,489	-		GFF3218	0.48	-1.0
3,274,504	+		GFF3218	0.55	-0.4
3,274,507	-		GFF3218	0.57	+1.1
3,274,507	-		GFF3218	0.57	-0.8
3,274,509	+		GFF3218	0.58	-0.7
3,274,512	-		GFF3218	0.59	+0.3
3,274,514	+		GFF3218	0.61	+0.4
3,274,519	-		GFF3218	0.63	-1.4
3,274,524	-		GFF3218	0.66	+0.4
3,274,538	+		GFF3218	0.73	-1.0
3,274,546	-		GFF3218	0.77	-0.9
3,274,591	+				+0.9
3,274,772	+				+0.5
3,274,772	+				+0.9
3,274,774	-				-0.7
3,274,780	-				+0.7
3,274,780	-				-0.1
3,274,780	-				+0.6
3,274,782	+				-3.1
3,274,785	-				+0.4
3,274,792	+				+1.8
3,274,795	-				-1.1
3,274,800	+				-1.5
3,274,800	+				-1.5
3,274,807	+				+0.1
3,274,813	-				+1.3
3,274,817	+				-0.8
3,274,817	+				+0.4
3,274,827	+				+0.6
3,274,827	+				-0.5
3,274,853	-				-0.4
3,274,857	+				-1.4
3,274,860	-				+0.7
3,274,860	-				+0.2
3,274,864	-				+0.2
3,274,872	-				-1.3
3,274,884	-				+1.1
3,274,913	+		GFF3220	0.10	-0.6
3,274,917	+		GFF3220	0.11	-2.0
3,274,921	-		GFF3220	0.11	-1.2
3,274,922	+		GFF3220	0.11	-0.0
3,274,922	+		GFF3220	0.11	-1.6
3,274,922	+		GFF3220	0.11	-0.4
3,274,922	+		GFF3220	0.11	+0.4
3,274,922	+		GFF3220	0.11	-3.2
3,274,923	+		GFF3220	0.11	+0.6
3,274,923	+		GFF3220	0.11	-1.9
3,274,923	-		GFF3220	0.11	+0.3
3,274,923	-		GFF3220	0.11	+0.8
3,274,923	-		GFF3220	0.11	-0.2
3,274,923	-		GFF3220	0.11	+0.6
3,274,925	+		GFF3220	0.11	-0.9
3,274,925	-		GFF3220	0.11	-1.1
3,274,925	-		GFF3220	0.11	-2.1
3,274,930	-		GFF3220	0.12	+0.2
3,274,930	-		GFF3220	0.12	-1.8
3,274,930	-		GFF3220	0.12	-2.4
3,274,930	-		GFF3220	0.12	-0.8
3,274,930	-		GFF3220	0.12	-0.5
3,274,930	-		GFF3220	0.12	-0.1
3,274,930	-		GFF3220	0.12	+1.0
3,274,930	-		GFF3220	0.12	+0.2
3,274,930	-		GFF3220	0.12	-0.1
3,274,930	-		GFF3220	0.12	+0.6
3,274,931	-		GFF3220	0.12	-0.5
3,274,931	-		GFF3220	0.12	-2.4
3,274,931	-		GFF3220	0.12	-0.1
3,274,932	+		GFF3220	0.12	-2.3
3,274,932	+		GFF3220	0.12	-1.4
3,274,932	+		GFF3220	0.12	+0.2
3,274,935	-		GFF3220	0.12	+0.8
3,274,940	-		GFF3220	0.13	-0.5
3,274,940	-		GFF3220	0.13	-1.3
3,274,947	+		GFF3220	0.13	+0.2
3,274,951	+		GFF3220	0.14	-0.3
3,274,955	-		GFF3220	0.14	+0.6
3,274,961	+		GFF3220	0.15	-0.8
3,274,961	+		GFF3220	0.15	+1.1
3,274,961	+		GFF3220	0.15	+1.4
3,274,961	+		GFF3220	0.15	+0.3
3,274,969	-		GFF3220	0.15	-0.2
3,274,990	+		GFF3220	0.17	+0.6
3,274,992	+		GFF3220	0.17	+0.2
3,274,998	-		GFF3220	0.18	-0.5
3,274,998	-		GFF3220	0.18	+0.8
3,274,998	-		GFF3220	0.18	-0.4
3,275,000	-		GFF3220	0.18	-1.2
3,275,005	-		GFF3220	0.18	+0.3
3,275,013	-		GFF3220	0.19	+0.8
3,275,019	+		GFF3220	0.20	-0.1
3,275,019	+		GFF3220	0.20	-0.9
3,275,019	+		GFF3220	0.20	+0.4
3,275,027	-		GFF3220	0.20	-0.0
3,275,027	-		GFF3220	0.20	-0.9
3,275,027	-		GFF3220	0.20	-1.8
3,275,027	-		GFF3220	0.20	+0.2
3,275,038	+		GFF3220	0.21	-0.8
3,275,038	+		GFF3220	0.21	-1.3
3,275,046	-		GFF3220	0.22	-0.1
3,275,047	+		GFF3220	0.22	+0.6
3,275,056	-		GFF3220	0.23	-0.0
3,275,067	-		GFF3220	0.24	-0.1
3,275,100	+		GFF3220	0.27	-1.5
3,275,100	+		GFF3220	0.27	-0.0
3,275,100	+		GFF3220	0.27	-1.5
3,275,103	+		GFF3220	0.27	-1.7
3,275,103	+		GFF3220	0.27	-2.0
3,275,108	-		GFF3220	0.27	-0.4
3,275,139	+		GFF3220	0.30	+1.1
3,275,140	+		GFF3220	0.30	+0.0
3,275,140	+		GFF3220	0.30	-0.3
3,275,140	+		GFF3220	0.30	-1.3
3,275,140	+		GFF3220	0.30	-2.0
3,275,140	+		GFF3220	0.30	+0.7
3,275,140	+		GFF3220	0.30	+0.2
3,275,148	-		GFF3220	0.31	+1.2
3,275,148	-		GFF3220	0.31	+0.2
3,275,148	-		GFF3220	0.31	+0.1
3,275,148	-		GFF3220	0.31	-0.2
3,275,148	-		GFF3220	0.31	-0.4
3,275,148	-		GFF3220	0.31	-1.5
3,275,148	-		GFF3220	0.31	-1.2
3,275,148	-		GFF3220	0.31	+0.5
3,275,158	-		GFF3220	0.32	-0.8
3,275,162	-		GFF3220	0.32	-0.5
3,275,164	+		GFF3220	0.32	+0.4
3,275,164	+		GFF3220	0.32	+0.1
3,275,172	-		GFF3220	0.33	-0.3
3,275,172	-		GFF3220	0.33	-1.1
3,275,172	-		GFF3220	0.33	-1.2
3,275,210	-		GFF3220	0.36	-0.9
3,275,210	-		GFF3220	0.36	+0.2
3,275,215	+		GFF3220	0.37	+0.6
3,275,216	+		GFF3220	0.37	-0.8
3,275,223	+		GFF3220	0.38	+0.5
3,275,223	+		GFF3220	0.38	+1.0
3,275,224	-		GFF3220	0.38	+0.4
3,275,229	-		GFF3220	0.38	+0.1
3,275,231	+		GFF3220	0.38	-1.6
3,275,231	+		GFF3220	0.38	-0.6
3,275,231	+		GFF3220	0.38	+0.1
3,275,231	+		GFF3220	0.38	+0.0
3,275,231	-		GFF3220	0.38	-0.4
3,275,239	-		GFF3220	0.39	+1.3
3,275,239	-		GFF3220	0.39	+1.1
3,275,239	-		GFF3220	0.39	+0.4
3,275,250	+		GFF3220	0.40	+0.4
3,275,250	+		GFF3220	0.40	-0.9
3,275,251	-		GFF3220	0.40	+0.6
3,275,256	-		GFF3220	0.40	-0.7
3,275,256	-		GFF3220	0.40	-0.2
3,275,275	+		GFF3220	0.42	-0.4
3,275,275	+		GFF3220	0.42	+1.0
3,275,275	+		GFF3220	0.42	-1.4
3,275,275	+		GFF3220	0.42	-0.1
3,275,275	+		GFF3220	0.42	-0.7
3,275,275	+		GFF3220	0.42	-0.5
3,275,283	-		GFF3220	0.43	-1.5
3,275,283	-		GFF3220	0.43	+0.6
3,275,283	-		GFF3220	0.43	-1.0
3,275,307	-		GFF3220	0.45	-0.9
3,275,316	+		GFF3220	0.46	+1.2
3,275,330	+		GFF3220	0.47	-1.5
3,275,330	+		GFF3220	0.47	-0.5
3,275,330	+		GFF3220	0.47	-0.5
3,275,330	+		GFF3220	0.47	-1.3
3,275,330	+		GFF3220	0.47	-1.7
3,275,330	+		GFF3220	0.47	-0.7
3,275,330	+		GFF3220	0.47	-0.2
3,275,330	+		GFF3220	0.47	-1.1
3,275,330	+		GFF3220	0.47	-1.2
3,275,330	+		GFF3220	0.47	+0.5
3,275,330	+		GFF3220	0.47	-0.6
3,275,330	+		GFF3220	0.47	-1.2
3,275,330	+		GFF3220	0.47	-0.6
3,275,330	+		GFF3220	0.47	-0.3
3,275,330	+		GFF3220	0.47	-1.2
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