Strain Fitness in Sphingobium sp. HT1-2 around GFF3208

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,263,123	+				+1.0
3,263,131	+				+1.4
3,263,145	-				-0.0
3,263,153	-				-0.0
3,263,176	+				+1.4
3,263,181	+				+0.4
3,263,181	+				-1.2
3,263,184	-				-0.0
3,263,184	-				+1.2
3,263,184	-				-0.2
3,263,184	-				+0.9
3,263,186	+				-0.1
3,263,188	+				-0.8
3,263,189	-				+0.5
3,263,194	-				+0.7
3,263,194	-				+0.0
3,263,194	-				-1.0
3,263,195	-				+0.7
3,263,195	-				+0.7
3,263,217	+		GFF3206	0.10	+0.4
3,263,252	-		GFF3206	0.16	-1.6
3,263,281	-		GFF3206	0.20	-1.3
3,263,294	+		GFF3206	0.22	+1.9
3,263,294	+		GFF3206	0.22	+0.3
3,263,294	+		GFF3206	0.22	-0.5
3,263,302	+		GFF3206	0.23	+0.1
3,263,302	-		GFF3206	0.23	-1.2
3,263,302	-		GFF3206	0.23	-0.0
3,263,331	+		GFF3206	0.27	-0.3
3,263,332	-		GFF3206	0.27	-1.7
3,263,336	-		GFF3206	0.28	+0.6
3,263,338	+		GFF3206	0.28	-0.5
3,263,338	+		GFF3206	0.28	-1.1
3,263,344	+		GFF3206	0.29	-2.2
3,263,353	+		GFF3206	0.31	+0.9
3,263,355	+		GFF3206	0.31	-1.6
3,263,361	-		GFF3206	0.32	-0.6
3,263,367	+		GFF3206	0.33	+0.5
3,263,372	+		GFF3206	0.33	-1.1
3,263,375	-		GFF3206	0.34	+0.5
3,263,375	-		GFF3206	0.34	-1.3
3,263,375	-		GFF3206	0.34	-1.3
3,263,398	+		GFF3206	0.37	+0.5
3,263,398	+		GFF3206	0.37	+0.4
3,263,398	+		GFF3206	0.37	+0.7
3,263,403	+		GFF3206	0.38	+0.8
3,263,406	-		GFF3206	0.38	-0.3
3,263,438	-		GFF3206	0.43	+1.2
3,263,440	+		GFF3206	0.43	-2.4
3,263,443	-		GFF3206	0.44	-1.8
3,263,448	-		GFF3206	0.45	+0.7
3,263,451	+		GFF3206	0.45	-0.8
3,263,459	-		GFF3206	0.46	-0.7
3,263,495	+		GFF3206	0.52	-1.2
3,263,495	+		GFF3206	0.52	+0.1
3,263,528	+		GFF3206	0.56	-0.3
3,263,531	-		GFF3206	0.57	-0.7
3,263,533	+		GFF3206	0.57	+0.2
3,263,550	+		GFF3206	0.60	-1.8
3,263,550	+		GFF3206	0.60	+0.5
3,263,552	-		GFF3206	0.60	-0.1
3,263,555	+		GFF3206	0.60	+0.1
3,263,558	-		GFF3206	0.61	-0.9
3,263,558	-		GFF3206	0.61	+0.3
3,263,560	+		GFF3206	0.61	-0.1
3,263,568	-		GFF3206	0.62	-1.1
3,263,568	-		GFF3206	0.62	-0.0
3,263,572	+		GFF3206	0.63	+0.5
3,263,577	+		GFF3206	0.64	-1.5
3,263,577	+		GFF3206	0.64	+2.1
3,263,577	+		GFF3206	0.64	+0.8
3,263,577	+		GFF3206	0.64	-0.9
3,263,577	+		GFF3206	0.64	-0.5
3,263,585	-		GFF3206	0.65	-0.8
3,263,585	-		GFF3206	0.65	+0.6
3,263,585	-		GFF3206	0.65	-0.3
3,263,585	-		GFF3206	0.65	-1.2
3,263,597	+		GFF3206	0.67	-1.2
3,263,597	+		GFF3206	0.67	-0.3
3,263,597	+		GFF3206	0.67	+0.5
3,263,597	+		GFF3206	0.67	+0.5
3,263,597	+		GFF3206	0.67	+0.7
3,263,605	-		GFF3206	0.68	+0.3
3,263,605	-		GFF3206	0.68	+0.2
3,263,605	-		GFF3206	0.68	-0.3
3,263,605	-		GFF3206	0.68	+0.3
3,263,605	-		GFF3206	0.68	-0.0
3,263,605	-		GFF3206	0.68	+1.1
3,263,605	-		GFF3206	0.68	-0.1
3,263,605	-		GFF3206	0.68	-0.4
3,263,605	-		GFF3206	0.68	-1.4
3,263,623	+		GFF3206	0.71	+0.5
3,263,626	+		GFF3206	0.71	-1.3
3,263,639	-		GFF3206	0.73	-1.3
3,263,654	+		GFF3206	0.75	-0.7
3,263,654	+		GFF3206	0.75	-2.3
3,263,654	+		GFF3206	0.75	-2.1
3,263,654	+		GFF3206	0.75	-0.3
3,263,654	+		GFF3206	0.75	+0.4
3,263,662	-		GFF3206	0.76	-0.7
3,263,662	-		GFF3206	0.76	-2.2
3,263,662	-		GFF3206	0.76	-1.2
3,263,662	-		GFF3206	0.76	-0.1
3,263,662	-		GFF3206	0.76	-0.2
3,263,662	-		GFF3206	0.76	-1.2
3,263,665	+		GFF3206	0.77	+0.6
3,263,697	-		GFF3206	0.81	+0.8
3,263,723	+		GFF3206	0.85	-1.0
3,263,731	-		GFF3206	0.87	-0.5
3,263,752	+		GFF3206	0.90	-1.5
3,263,759	-				+0.5
3,263,761	+				-0.3
3,263,762	+				-0.1
3,263,762	+				+0.3
3,263,765	-				+1.1
3,263,765	-				-1.2
3,263,765	-				-0.9
3,263,765	-				+0.2
3,263,767	+				+0.4
3,263,770	-				-0.3
3,263,771	+				-0.1
3,263,771	+				-0.8
3,263,771	+				-1.5
3,263,771	+				-0.4
3,263,771	+				-1.8
3,263,777	-				-0.2
3,263,779	-				-0.1
3,263,779	-				-1.5
3,263,784	+				-0.4
3,263,794	+				-1.1
3,263,802	-				-0.7
3,263,802	-				-3.1
3,263,819	+				-1.2
3,263,827	-				+0.5
3,263,827	-				-3.0
3,263,829	+				-1.8
3,263,831	+				-0.9
3,263,837	-				+0.8
3,263,837	-				-0.9
3,263,842	+				-0.9
3,263,859	+				+0.4
3,263,867	-				+0.1
3,263,867	-				-0.9
3,263,882	-		GFF3207	0.19	+1.9
3,263,882	-		GFF3207	0.19	-1.2
3,263,882	-		GFF3207	0.19	+0.4
3,263,883	+		GFF3207	0.20	-1.5
3,263,899	+		GFF3207	0.30	-3.4
3,263,899	+		GFF3207	0.30	-0.3
3,263,901	-		GFF3207	0.31	+0.0
3,263,907	-		GFF3207	0.35	+0.6
3,263,912	-		GFF3207	0.38	+0.1
3,263,921	+		GFF3207	0.43	-0.5
3,263,931	+		GFF3207	0.49	+0.2
3,263,931	+		GFF3207	0.49	+0.1
3,263,931	+		GFF3207	0.49	-1.9
3,263,931	+		GFF3207	0.49	+0.8
3,263,931	+		GFF3207	0.49	-1.9
3,263,931	+		GFF3207	0.49	-1.0
3,263,931	+		GFF3207	0.49	-0.4
3,263,931	+		GFF3207	0.49	-0.8
3,263,931	+		GFF3207	0.49	-0.2
3,263,939	-		GFF3207	0.54	+0.2
3,263,939	-		GFF3207	0.54	-0.4
3,263,939	-		GFF3207	0.54	+0.2
3,263,939	-		GFF3207	0.54	-2.9
3,263,939	-		GFF3207	0.54	-0.6
3,263,939	-		GFF3207	0.54	+1.0
3,263,939	-		GFF3207	0.54	+0.7
3,263,939	-		GFF3207	0.54	-0.4
3,263,939	-		GFF3207	0.54	+0.2
3,263,939	-		GFF3207	0.54	+0.9
3,263,939	-		GFF3207	0.54	-2.1
3,263,939	-		GFF3207	0.54	-0.5
3,263,939	-		GFF3207	0.54	-1.8
3,263,939	-		GFF3207	0.54	+0.9
3,263,939	-		GFF3207	0.54	-0.3
3,263,939	-		GFF3207	0.54	+0.9
3,263,939	-		GFF3207	0.54	+0.4
3,263,947	-		GFF3207	0.59	+0.4
3,263,947	-		GFF3207	0.59	-0.3
3,263,947	-		GFF3207	0.59	-1.1
3,263,949	+		GFF3207	0.60	+0.3
3,263,949	+		GFF3207	0.60	-0.0
3,263,954	+		GFF3207	0.64	-1.2
3,263,954	+		GFF3207	0.64	-1.7
3,263,954	+		GFF3207	0.64	+0.3
3,263,954	+		GFF3207	0.64	+0.8
3,263,962	-		GFF3207	0.69	-0.5
3,264,043	+				-0.2
3,264,051	-				-0.3
3,264,071	-				+1.3
3,264,075	+				-1.6
3,264,076	-				-2.5
3,264,083	-				+0.2
3,264,090	+				-1.0
3,264,090	+				+0.8
3,264,097	+				+1.8
3,264,154	+				+0.9
3,264,154	+				+0.0
3,264,162	-				-0.8
3,264,162	-				+0.9
3,264,204	-				-2.0
3,264,226	+		GFF3208	0.12	-0.7
3,264,277	+		GFF3208	0.16	-0.7
3,264,277	+		GFF3208	0.16	-0.3
3,264,277	+		GFF3208	0.16	+0.8
3,264,282	+		GFF3208	0.17	+2.0
3,264,285	-		GFF3208	0.17	-1.1
3,264,295	-		GFF3208	0.18	-0.6
3,264,309	+		GFF3208	0.19	+0.8
3,264,309	-		GFF3208	0.19	+0.5
3,264,323	+		GFF3208	0.20	+1.6
3,264,323	+		GFF3208	0.20	-0.4
3,264,323	+		GFF3208	0.20	+0.3
3,264,323	+		GFF3208	0.20	+0.4
3,264,323	+		GFF3208	0.20	+0.2
3,264,323	+		GFF3208	0.20	-0.5
3,264,323	+		GFF3208	0.20	-0.8
3,264,323	+		GFF3208	0.20	-0.9
3,264,323	-		GFF3208	0.20	+0.5
3,264,331	-		GFF3208	0.21	-0.9
3,264,331	-		GFF3208	0.21	+0.2
3,264,331	-		GFF3208	0.21	-0.4
3,264,344	-		GFF3208	0.22	+0.6
3,264,357	+		GFF3208	0.23	+0.6
3,264,357	-		GFF3208	0.23	+0.5
3,264,358	+		GFF3208	0.24	-0.3
3,264,361	-		GFF3208	0.24	-0.5
3,264,362	+		GFF3208	0.24	-1.3
3,264,362	+		GFF3208	0.24	-1.2
3,264,362	+		GFF3208	0.24	+0.9
3,264,362	+		GFF3208	0.24	-0.2
3,264,362	+		GFF3208	0.24	+0.1
3,264,370	-		GFF3208	0.25	+0.5
3,264,388	+		GFF3208	0.26	-1.0
3,264,398	+		GFF3208	0.27	+0.2
3,264,398	+		GFF3208	0.27	-0.4
3,264,398	+		GFF3208	0.27	+0.6
3,264,398	+		GFF3208	0.27	-0.8
3,264,398	+		GFF3208	0.27	+0.4
3,264,398	+		GFF3208	0.27	-0.0
3,264,400	+		GFF3208	0.27	-0.7
3,264,406	-		GFF3208	0.28	+1.3
3,264,406	-		GFF3208	0.28	-2.7
3,264,406	-		GFF3208	0.28	+1.0
3,264,406	-		GFF3208	0.28	+0.9
3,264,406	-		GFF3208	0.28	+0.3
3,264,423	+		GFF3208	0.29	+0.8
3,264,441	+		GFF3208	0.31	+0.8
3,264,447	+		GFF3208	0.31	+0.4
3,264,449	-		GFF3208	0.32	-0.9
3,264,451	+		GFF3208	0.32	+0.2
3,264,454	-		GFF3208	0.32	+0.8
3,264,462	+		GFF3208	0.33	-1.6
3,264,479	+		GFF3208	0.34	+1.1
3,264,486	-		GFF3208	0.35	+1.0
3,264,495	+		GFF3208	0.36	+1.0
3,264,495	+		GFF3208	0.36	+0.1
3,264,497	-		GFF3208	0.36	-1.4
3,264,503	-		GFF3208	0.36	-0.1
3,264,503	-		GFF3208	0.36	-0.4
3,264,503	-		GFF3208	0.36	-0.1
3,264,513	+		GFF3208	0.37	+0.5
3,264,513	+		GFF3208	0.37	-0.8
3,264,516	+		GFF3208	0.38	-0.1
3,264,516	+		GFF3208	0.38	-0.7
3,264,521	-		GFF3208	0.38	+0.0
3,264,524	-		GFF3208	0.38	+1.2
3,264,531	-		GFF3208	0.39	+0.5
3,264,533	+		GFF3208	0.39	-1.8
3,264,533	+		GFF3208	0.39	+0.2
3,264,536	+		GFF3208	0.39	-2.0
3,264,541	-		GFF3208	0.40	-0.4
3,264,541	-		GFF3208	0.40	+0.7
3,264,572	+		GFF3208	0.43	-0.5
3,264,572	+		GFF3208	0.43	+1.1
3,264,577	+		GFF3208	0.43	+0.3
3,264,580	-		GFF3208	0.43	-0.8
3,264,657	-		GFF3208	0.50	-0.6
3,264,689	-		GFF3208	0.53	+0.1
3,264,689	-		GFF3208	0.53	-0.2
3,264,689	-		GFF3208	0.53	+0.8
3,264,689	-		GFF3208	0.53	-2.6
3,264,720	-		GFF3208	0.56	-0.6
3,264,730	+		GFF3208	0.57	-0.0
3,264,730	+		GFF3208	0.57	-0.2
3,264,737	-		GFF3208	0.57	+0.1
3,264,738	+		GFF3208	0.57	-0.7
3,264,738	+		GFF3208	0.57	-1.0
3,264,741	+		GFF3208	0.58	+0.2
3,264,743	+		GFF3208	0.58	+0.1
3,264,743	+		GFF3208	0.58	+0.4
3,264,750	+		GFF3208	0.58	-1.2
3,264,751	-		GFF3208	0.58	-0.9
3,264,751	-		GFF3208	0.58	+0.0
3,264,757	+		GFF3208	0.59	-1.3
3,264,757	+		GFF3208	0.59	+0.8
3,264,758	-		GFF3208	0.59	+0.3
3,264,759	+		GFF3208	0.59	-0.9
3,264,759	+		GFF3208	0.59	+0.3
3,264,759	+		GFF3208	0.59	+0.2
3,264,759	+		GFF3208	0.59	-1.8
3,264,759	+		GFF3208	0.59	+0.3
3,264,759	+		GFF3208	0.59	+0.2
3,264,759	+		GFF3208	0.59	+0.1
3,264,759	+		GFF3208	0.59	-1.6
3,264,759	+		GFF3208	0.59	-0.7
3,264,766	+		GFF3208	0.60	+0.8
3,264,766	-		GFF3208	0.60	-0.4
3,264,767	-		GFF3208	0.60	+1.0
3,264,767	-		GFF3208	0.60	-1.2
3,264,767	-		GFF3208	0.60	+0.5
3,264,767	-		GFF3208	0.60	+0.2
3,264,767	-		GFF3208	0.60	-0.5
3,264,767	-		GFF3208	0.60	-1.8
3,264,767	-		GFF3208	0.60	-0.1
3,264,769	-		GFF3208	0.60	+1.0
3,264,772	-		GFF3208	0.60	+1.3
3,264,774	-		GFF3208	0.61	+1.3
3,264,774	-		GFF3208	0.61	-0.4
3,264,783	+		GFF3208	0.61	+1.5
3,264,783	+		GFF3208	0.61	+1.1
3,264,783	+		GFF3208	0.61	-0.2
3,264,784	-		GFF3208	0.61	+1.5
3,264,784	-		GFF3208	0.61	-1.5
3,264,784	-		GFF3208	0.61	+0.3
3,264,784	-		GFF3208	0.61	-1.8
3,264,791	-		GFF3208	0.62	+0.6
3,264,795	+		GFF3208	0.62	+0.8
3,264,800	+		GFF3208	0.63	+0.8
3,264,800	+		GFF3208	0.63	-0.5
3,264,800	+		GFF3208	0.63	+0.4
3,264,800	+		GFF3208	0.63	-1.2
3,264,800	+		GFF3208	0.63	+0.2
3,264,800	+		GFF3208	0.63	-1.6
3,264,800	+		GFF3208	0.63	+0.4
3,264,803	-		GFF3208	0.63	-1.3
3,264,803	-		GFF3208	0.63	+0.6
3,264,803	-		GFF3208	0.63	-0.8
3,264,808	-		GFF3208	0.64	-0.6
3,264,808	-		GFF3208	0.64	-1.8
3,264,808	-		GFF3208	0.64	-0.6
3,264,808	-		GFF3208	0.64	+0.4
3,264,831	+		GFF3208	0.66	+0.2
3,264,831	+		GFF3208	0.66	-0.8
3,264,833	+		GFF3208	0.66	+0.2
3,264,839	-		GFF3208	0.66	+0.5
3,264,842	+		GFF3208	0.67	+0.7
3,264,914	+		GFF3208	0.73	-1.3
3,264,914	+		GFF3208	0.73	+0.4
3,264,922	-		GFF3208	0.74	+0.9
3,264,922	-		GFF3208	0.74	+0.7
3,264,922	-		GFF3208	0.74	+1.2
3,264,922	-		GFF3208	0.74	+0.8
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