Strain Fitness in Sphingobium sp. HT1-2 around GFF3176

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,240,158	+		GFF3175	0.23	-3.0
3,240,165	+		GFF3175	0.23	+1.0
3,240,173	-		GFF3175	0.24	-0.2
3,240,197	+		GFF3175	0.26	-1.2
3,240,197	+		GFF3175	0.26	-0.5
3,240,197	+		GFF3175	0.26	+1.8
3,240,205	-		GFF3175	0.27	-2.1
3,240,205	-		GFF3175	0.27	-0.7
3,240,211	-		GFF3175	0.27	+1.4
3,240,215	-		GFF3175	0.27	+0.1
3,240,219	+		GFF3175	0.28	+0.7
3,240,219	+		GFF3175	0.28	+0.2
3,240,219	+		GFF3175	0.28	-0.7
3,240,219	+		GFF3175	0.28	+1.1
3,240,219	+		GFF3175	0.28	-0.3
3,240,219	+		GFF3175	0.28	+1.2
3,240,219	+		GFF3175	0.28	-0.3
3,240,222	-		GFF3175	0.28	-2.0
3,240,222	-		GFF3175	0.28	+0.2
3,240,222	-		GFF3175	0.28	-0.0
3,240,222	-		GFF3175	0.28	+0.4
3,240,227	-		GFF3175	0.28	-0.0
3,240,227	-		GFF3175	0.28	+2.1
3,240,233	+		GFF3175	0.29	+0.1
3,240,233	-		GFF3175	0.29	+0.5
3,240,241	-		GFF3175	0.30	+0.0
3,240,241	-		GFF3175	0.30	-0.7
3,240,286	+		GFF3175	0.33	-0.3
3,240,294	-		GFF3175	0.34	+0.5
3,240,294	-		GFF3175	0.34	+0.2
3,240,301	+		GFF3175	0.35	-0.6
3,240,330	-		GFF3175	0.37	-0.5
3,240,335	+		GFF3175	0.37	-0.6
3,240,353	-		GFF3175	0.39	-0.5
3,240,356	+		GFF3175	0.39	+0.5
3,240,370	-		GFF3175	0.40	+1.7
3,240,378	-		GFF3175	0.41	-0.9
3,240,389	+		GFF3175	0.42	-1.0
3,240,426	-		GFF3175	0.45	-1.3
3,240,434	+		GFF3175	0.46	-0.1
3,240,442	-		GFF3175	0.46	-1.6
3,240,442	-		GFF3175	0.46	-1.3
3,240,442	-		GFF3175	0.46	-0.0
3,240,442	-		GFF3175	0.46	+0.9
3,240,442	-		GFF3175	0.46	-1.8
3,240,465	-		GFF3175	0.48	+0.1
3,240,491	+		GFF3175	0.50	-0.2
3,240,501	+		GFF3175	0.51	+1.8
3,240,539	+		GFF3175	0.54	-0.1
3,240,539	+		GFF3175	0.54	-1.8
3,240,547	+		GFF3175	0.55	+0.8
3,240,547	-		GFF3175	0.55	+1.1
3,240,547	-		GFF3175	0.55	-1.1
3,240,548	-		GFF3175	0.55	-1.8
3,240,548	-		GFF3175	0.55	+0.2
3,240,555	-		GFF3175	0.56	-1.5
3,240,555	-		GFF3175	0.56	+0.2
3,240,557	+		GFF3175	0.56	-0.3
3,240,576	-		GFF3175	0.57	+0.9
3,240,600	+		GFF3175	0.59	+1.2
3,240,624	+		GFF3175	0.61	+0.7
3,240,627	-		GFF3175	0.62	-0.1
3,240,632	-		GFF3175	0.62	-0.2
3,240,635	+		GFF3175	0.62	+0.4
3,240,654	-		GFF3175	0.64	-0.5
3,240,664	+		GFF3175	0.65	+0.1
3,240,664	+		GFF3175	0.65	+0.8
3,240,667	-		GFF3175	0.65	+1.1
3,240,685	-		GFF3175	0.66	-1.3
3,240,694	+		GFF3175	0.67	-0.8
3,240,696	+		GFF3175	0.67	+0.9
3,240,707	-		GFF3175	0.68	-1.0
3,240,717	-		GFF3175	0.69	-0.1
3,240,732	+		GFF3175	0.70	+0.6
3,240,737	+		GFF3175	0.71	-0.2
3,240,737	+		GFF3175	0.71	+2.0
3,240,747	+		GFF3175	0.72	-1.1
3,240,794	+		GFF3175	0.75	+0.4
3,240,794	+		GFF3175	0.75	-2.4
3,240,802	-		GFF3175	0.76	-0.1
3,240,813	+		GFF3175	0.77	+0.9
3,240,813	+		GFF3175	0.77	-0.3
3,240,814	-		GFF3175	0.77	+0.6
3,240,816	+		GFF3175	0.77	+1.3
3,240,816	-		GFF3175	0.77	-0.6
3,240,847	+		GFF3175	0.80	+0.5
3,240,853	-		GFF3175	0.80	-0.7
3,240,853	-		GFF3175	0.80	+0.3
3,240,860	+		GFF3175	0.81	+1.2
3,240,860	+		GFF3175	0.81	+1.5
3,240,875	+		GFF3175	0.82	-1.1
3,240,890	+		GFF3175	0.83	+0.9
3,240,898	-		GFF3175	0.84	-1.9
3,240,898	-		GFF3175	0.84	+0.5
3,240,898	-		GFF3175	0.84	+0.7
3,240,900	+		GFF3175	0.84	-0.8
3,240,903	-		GFF3175	0.84	-0.3
3,240,903	-		GFF3175	0.84	-1.0
3,240,903	-		GFF3175	0.84	+0.8
3,240,914	+		GFF3175	0.85	-2.1
3,240,929	+		GFF3175	0.87	-1.3
3,240,937	+		GFF3175	0.87	+0.2
3,240,937	-		GFF3175	0.87	-1.3
3,240,937	-		GFF3175	0.87	+0.3
3,240,942	-		GFF3175	0.88	-0.9
3,240,944	+		GFF3175	0.88	-1.9
3,240,945	-		GFF3175	0.88	-0.1
3,240,947	-		GFF3175	0.88	-0.3
3,240,981	+				-0.8
3,240,981	+				+0.5
3,240,981	+				-0.7
3,240,985	-				+0.6
3,240,986	+				+0.5
3,240,989	-				+1.2
3,240,999	-				-0.2
3,241,009	-				+0.5
3,241,016	+				-0.3
3,241,024	-				-0.3
3,241,045	+				-0.0
3,241,045	+				+0.7
3,241,047	+				+0.8
3,241,047	+				-1.6
3,241,053	-				-1.2
3,241,053	-				+0.2
3,241,053	-				+0.2
3,241,053	-				-0.1
3,241,053	-				+0.4
3,241,055	-				+0.4
3,241,055	-				-0.1
3,241,065	-				-1.3
3,241,070	+				-0.3
3,241,070	+				+1.5
3,241,070	+				-1.2
3,241,078	-				+0.7
3,241,078	-				-0.3
3,241,088	-				+0.3
3,241,109	-				-1.1
3,241,109	-				+0.5
3,241,126	+				+0.2
3,241,144	-				+1.8
3,241,146	-				+0.3
3,241,157	-				+0.1
3,241,169	+				-1.3
3,241,169	+				-0.3
3,241,169	+				+0.7
3,241,169	+				+0.7
3,241,169	+				-1.2
3,241,169	+				-0.8
3,241,169	+				-0.6
3,241,169	+				+0.3
3,241,169	+				+0.5
3,241,169	+				+0.9
3,241,169	+				-1.2
3,241,169	+				+0.2
3,241,169	+				+0.4
3,241,169	+				+0.1
3,241,169	+				-0.5
3,241,169	+				-0.5
3,241,169	+				-0.6
3,241,169	+				-0.2
3,241,169	+				+0.4
3,241,169	+				-1.4
3,241,169	+				-0.0
3,241,169	+				-0.2
3,241,169	+				+0.4
3,241,169	+				+0.1
3,241,170	+				+0.2
3,241,177	-		GFF3176	0.11	+0.3
3,241,177	-		GFF3176	0.11	+0.8
3,241,177	-		GFF3176	0.11	+0.1
3,241,177	-		GFF3176	0.11	+0.5
3,241,177	-		GFF3176	0.11	+0.7
3,241,177	-		GFF3176	0.11	-0.5
3,241,177	-		GFF3176	0.11	-2.3
3,241,177	-		GFF3176	0.11	+0.8
3,241,177	-		GFF3176	0.11	-0.1
3,241,177	-		GFF3176	0.11	-1.5
3,241,177	-		GFF3176	0.11	+0.7
3,241,177	-		GFF3176	0.11	-0.8
3,241,177	-		GFF3176	0.11	+0.7
3,241,177	-		GFF3176	0.11	-0.0
3,241,177	-		GFF3176	0.11	+0.2
3,241,177	-		GFF3176	0.11	-2.3
3,241,177	-		GFF3176	0.11	+0.2
3,241,177	-		GFF3176	0.11	+0.2
3,241,183	+		GFF3176	0.13	+0.2
3,241,183	+		GFF3176	0.13	-1.7
3,241,191	-		GFF3176	0.16	+0.0
3,241,201	-		GFF3176	0.19	-0.8
3,241,220	+		GFF3176	0.24	-2.2
3,241,220	-		GFF3176	0.24	-1.5
3,241,233	-		GFF3176	0.28	-1.2
3,241,235	+		GFF3176	0.29	+0.6
3,241,258	-		GFF3176	0.36	+0.2
3,241,292	+		GFF3176	0.46	+0.7
3,241,359	+		GFF3176	0.67	+0.7
3,241,367	-		GFF3176	0.69	+0.4
3,241,376	-		GFF3176	0.72	+0.7
3,241,432	-		GFF3176	0.89	-1.1
3,241,437	-				-0.4
3,241,483	-				-0.5
3,241,495	+				-0.2
3,241,503	-				-1.8
3,241,516	-				+0.5
3,241,542	+		GFF3177	0.13	-2.0
3,241,542	+		GFF3177	0.13	+0.6
3,241,550	-		GFF3177	0.14	+0.7
3,241,559	+		GFF3177	0.16	+1.7
3,241,592	+		GFF3177	0.22	-0.5
3,241,600	-		GFF3177	0.23	-1.7
3,241,600	-		GFF3177	0.23	-1.1
3,241,600	-		GFF3177	0.23	-0.3
3,241,600	-		GFF3177	0.23	+1.2
3,241,611	+		GFF3177	0.25	-1.3
3,241,612	-		GFF3177	0.26	-0.2
3,241,619	+		GFF3177	0.27	-0.6
3,241,627	-		GFF3177	0.28	-0.5
3,241,659	+		GFF3177	0.34	-0.8
3,241,671	-		GFF3177	0.36	-0.3
3,241,677	-		GFF3177	0.38	-0.0
3,241,717	+		GFF3177	0.45	+0.7
3,241,717	+		GFF3177	0.45	-1.2
3,241,724	+		GFF3177	0.46	-1.0
3,241,725	-		GFF3177	0.46	+1.3
3,241,725	-		GFF3177	0.46	+0.7
3,241,739	+		GFF3177	0.49	+0.2
3,241,742	-		GFF3177	0.49	-0.3
3,241,760	+		GFF3177	0.53	-0.3
3,241,780	+		GFF3177	0.56	-1.2
3,241,785	-		GFF3177	0.57	+0.4
3,241,823	-		GFF3177	0.64	-0.2
3,241,887	+		GFF3177	0.76	-0.7
3,241,888	-		GFF3177	0.76	+0.9
3,241,890	-		GFF3177	0.77	+1.7
3,241,895	+		GFF3177	0.77	-0.0
3,241,898	-		GFF3177	0.78	+0.2
3,241,905	+		GFF3177	0.79	+0.5
3,241,928	+		GFF3177	0.84	+0.4
3,241,967	-				+0.5
3,241,976	+				-0.7
3,241,986	-				+0.8
3,241,995	+				+0.4
3,241,995	+				+0.4
3,241,998	+				+0.0
3,242,003	-				+0.2
3,242,010	-				+1.4
3,242,016	+				+0.0
3,242,024	-				-1.5
3,242,024	-				-1.2
3,242,053	+		GFF3178	0.11	-1.5
3,242,070	+		GFF3178	0.17	+0.2
3,242,070	+		GFF3178	0.17	-1.8
3,242,070	+		GFF3178	0.17	+0.8
3,242,070	+		GFF3178	0.17	-1.3
3,242,070	+		GFF3178	0.17	-0.3
3,242,070	+		GFF3178	0.17	-0.2
3,242,078	-		GFF3178	0.19	-1.6
3,242,088	+		GFF3178	0.22	+1.2
3,242,088	+		GFF3178	0.22	+0.3
3,242,101	-		GFF3178	0.27	-1.8
3,242,185	-		GFF3178	0.54	+0.8
3,242,203	+		GFF3178	0.59	-0.0
3,242,203	+		GFF3178	0.59	+0.1
3,242,211	-		GFF3178	0.62	-1.5
3,242,246	+		GFF3178	0.73	-1.7
3,242,256	+		GFF3178	0.76	+1.2
3,242,263	+		GFF3178	0.79	-0.5
3,242,268	+		GFF3178	0.80	-1.2
3,242,268	+		GFF3178	0.80	+0.8
3,242,276	-		GFF3178	0.83	+0.0
3,242,276	-		GFF3178	0.83	+0.8
3,242,284	+		GFF3178	0.85	-1.6
3,242,289	+		GFF3178	0.87	-1.2
3,242,291	+		GFF3178	0.88	-2.1
3,242,292	-		GFF3178	0.88	-0.4
3,242,294	+		GFF3178	0.88	+1.0
3,242,297	-		GFF3178	0.89	+0.2
3,242,297	-		GFF3178	0.89	-0.8
3,242,335	+				-1.8
3,242,337	+				-0.5
3,242,344	-				-0.6
3,242,361	+				-0.2
3,242,361	+				-0.8
3,242,368	-				+0.5
3,242,414	+				+0.5
3,242,419	+				-1.2
3,242,419	+				+0.8
3,242,419	+				-2.2
3,242,419	+				-0.8
3,242,419	+				-0.6
3,242,419	+				-0.6
3,242,421	-				-0.8
3,242,427	-				-0.7
3,242,427	-				+0.8
3,242,427	-				+1.3
3,242,427	-				+0.6
3,242,427	-				-1.3
3,242,427	-				-0.7
3,242,427	-				-0.3