Strain Fitness in Sphingobium sp. HT1-2 around GFF3027

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,100,040	+		GFF3025	0.89	-1.2
3,100,044	+		GFF3025	0.89	-0.5
3,100,053	-		GFF3025	0.89	-0.0
3,100,079	+				-0.8
3,100,079	+				+0.9
3,100,079	+				-0.5
3,100,079	+				+1.7
3,100,079	+				-1.0
3,100,079	+				+1.1
3,100,079	+				-1.5
3,100,079	+				-1.7
3,100,079	+				+1.4
3,100,079	+				+0.4
3,100,087	-				-1.2
3,100,087	-				+1.0
3,100,087	-				-0.2
3,100,087	-				-1.2
3,100,087	-				-0.4
3,100,087	-				-0.3
3,100,087	-				-0.5
3,100,087	-				+0.4
3,100,087	-				-1.2
3,100,087	-				-1.0
3,100,087	-				-1.8
3,100,087	-				+0.8
3,100,096	+				-0.6
3,100,096	+				+0.1
3,100,096	+				-0.4
3,100,096	+				-1.3
3,100,096	+				-0.2
3,100,096	+				-0.2
3,100,096	+				+0.8
3,100,096	+				-1.4
3,100,097	-				-0.1
3,100,104	-				+1.5
3,100,104	-				-1.4
3,100,104	-				-0.4
3,100,104	-				-0.7
3,100,104	-				-0.2
3,100,104	-				-1.1
3,100,129	+				+1.2
3,100,137	+				-0.4
3,100,137	-				-0.2
3,100,137	-				-0.7
3,100,137	-				+1.2
3,100,139	+				-1.9
3,100,139	-				+0.0
3,100,147	-				-0.6
3,100,151	-				-1.8
3,100,171	-				-0.3
3,100,171	-				+0.3
3,100,173	+				-0.4
3,100,173	+				+0.1
3,100,181	-				-1.7
3,100,181	-				-1.6
3,100,185	+				-0.0
3,100,185	+				-0.2
3,100,185	+				-0.4
3,100,185	+				-1.4
3,100,185	+				+1.0
3,100,185	+				-2.1
3,100,185	+				-0.9
3,100,185	+				-0.7
3,100,188	-				-2.4
3,100,188	-				+0.7
3,100,193	-				-1.2
3,100,206	+				-0.5
3,100,206	+				-1.0
3,100,206	+				-1.6
3,100,214	-				-1.5
3,100,242	+				+1.3
3,100,242	+				+0.4
3,100,242	+				+0.3
3,100,242	+				-1.5
3,100,247	+				+0.3
3,100,250	-				-0.7
3,100,250	-				+1.2
3,100,250	-				+0.4
3,100,250	-				-0.1
3,100,250	-				+0.1
3,100,250	-				+0.8
3,100,250	-				-0.3
3,100,250	-				-0.4
3,100,251	-				-1.0
3,100,260	-				-1.0
3,100,290	-				+1.1
3,100,296	-				-2.3
3,100,324	-		GFF3026	0.11	-1.9
3,100,326	+		GFF3026	0.12	+0.4
3,100,326	+		GFF3026	0.12	-0.5
3,100,381	+		GFF3026	0.19	+1.2
3,100,435	+		GFF3026	0.26	+0.4
3,100,435	+		GFF3026	0.26	-1.6
3,100,440	+		GFF3026	0.27	+0.8
3,100,443	-		GFF3026	0.27	-0.3
3,100,443	-		GFF3026	0.27	-0.4
3,100,443	-		GFF3026	0.27	-1.5
3,100,443	-		GFF3026	0.27	-0.5
3,100,449	+		GFF3026	0.28	-0.6
3,100,457	-		GFF3026	0.29	-0.4
3,100,457	-		GFF3026	0.29	-0.8
3,100,457	-		GFF3026	0.29	-0.2
3,100,457	-		GFF3026	0.29	-0.1
3,100,476	-		GFF3026	0.32	+0.0
3,100,479	+		GFF3026	0.32	+0.8
3,100,487	+		GFF3026	0.33	-0.1
3,100,487	-		GFF3026	0.33	+0.7
3,100,487	-		GFF3026	0.33	+0.7
3,100,500	+		GFF3026	0.35	-1.3
3,100,500	+		GFF3026	0.35	+0.7
3,100,505	+		GFF3026	0.35	+1.1
3,100,505	+		GFF3026	0.35	-0.2
3,100,505	+		GFF3026	0.35	+0.1
3,100,505	+		GFF3026	0.35	-0.7
3,100,505	+		GFF3026	0.35	-0.1
3,100,508	-		GFF3026	0.36	+0.5
3,100,513	-		GFF3026	0.37	-1.8
3,100,513	-		GFF3026	0.37	-0.5
3,100,513	-		GFF3026	0.37	-1.4
3,100,513	-		GFF3026	0.37	-0.4
3,100,513	-		GFF3026	0.37	+0.8
3,100,513	-		GFF3026	0.37	+0.1
3,100,513	-		GFF3026	0.37	-2.1
3,100,513	-		GFF3026	0.37	-0.4
3,100,513	-		GFF3026	0.37	+1.3
3,100,518	-		GFF3026	0.37	-0.3
3,100,518	-		GFF3026	0.37	-1.2
3,100,531	+		GFF3026	0.39	-1.1
3,100,537	-		GFF3026	0.40	+0.5
3,100,543	-		GFF3026	0.41	+0.1
3,100,570	+		GFF3026	0.44	-2.9
3,100,580	+		GFF3026	0.46	+0.6
3,100,580	-		GFF3026	0.46	-0.4
3,100,594	-		GFF3026	0.47	-0.3
3,100,629	+		GFF3026	0.52	+0.1
3,100,659	+		GFF3026	0.56	-2.6
3,100,659	+		GFF3026	0.56	-1.0
3,100,662	-		GFF3026	0.56	-0.8
3,100,678	+		GFF3026	0.59	-1.1
3,100,686	-		GFF3026	0.60	+1.7
3,100,686	-		GFF3026	0.60	+1.4
3,100,686	-		GFF3026	0.60	-0.6
3,100,686	-		GFF3026	0.60	+0.9
3,100,688	+		GFF3026	0.60	-0.1
3,100,696	-		GFF3026	0.61	-0.4
3,100,727	+		GFF3026	0.65	-0.5
3,100,732	+		GFF3026	0.66	-0.3
3,100,732	+		GFF3026	0.66	-0.6
3,100,732	+		GFF3026	0.66	-0.5
3,100,732	+		GFF3026	0.66	+0.3
3,100,732	+		GFF3026	0.66	-1.2
3,100,732	+		GFF3026	0.66	+0.1
3,100,735	-		GFF3026	0.66	+0.2
3,100,735	-		GFF3026	0.66	-0.9
3,100,735	-		GFF3026	0.66	-0.4
3,100,740	-		GFF3026	0.67	+0.5
3,100,740	-		GFF3026	0.67	-1.4
3,100,740	-		GFF3026	0.67	-1.6
3,100,742	+		GFF3026	0.67	+0.5
3,100,742	+		GFF3026	0.67	+0.3
3,100,742	+		GFF3026	0.67	-1.6
3,100,742	+		GFF3026	0.67	-2.1
3,100,750	-		GFF3026	0.68	-1.2
3,100,750	-		GFF3026	0.68	+0.5
3,100,750	-		GFF3026	0.68	+1.4
3,100,750	-		GFF3026	0.68	+0.0
3,100,773	+		GFF3026	0.71	-0.0
3,100,781	-		GFF3026	0.72	-1.8
3,100,787	-		GFF3026	0.73	-0.2
3,100,788	-		GFF3026	0.73	+0.4
3,100,798	-		GFF3026	0.75	+0.0
3,100,798	-		GFF3026	0.75	+1.3
3,100,800	+		GFF3026	0.75	-0.5
3,100,800	+		GFF3026	0.75	-2.0
3,100,803	+		GFF3026	0.75	+0.5
3,100,808	-		GFF3026	0.76	-1.0
3,100,808	-		GFF3026	0.76	+1.0
3,100,808	-		GFF3026	0.76	-1.7
3,100,808	-		GFF3026	0.76	+0.3
3,100,808	-		GFF3026	0.76	-0.5
3,100,834	+		GFF3026	0.80	-0.6
3,100,834	+		GFF3026	0.80	+0.3
3,100,834	+		GFF3026	0.80	+0.2
3,100,840	-		GFF3026	0.80	-0.5
3,100,841	-		GFF3026	0.80	-1.2
3,100,842	-		GFF3026	0.81	+1.3
3,100,842	-		GFF3026	0.81	-0.4
3,100,842	-		GFF3026	0.81	+1.0
3,100,859	+		GFF3026	0.83	+0.8
3,100,859	+		GFF3026	0.83	+1.1
3,100,859	+		GFF3026	0.83	-1.0
3,100,859	+		GFF3026	0.83	+0.1
3,100,859	+		GFF3026	0.83	+0.4
3,100,859	+		GFF3026	0.83	-0.7
3,100,867	-		GFF3026	0.84	-1.7
3,100,867	-		GFF3026	0.84	+0.3
3,100,867	-		GFF3026	0.84	-0.4
3,100,867	-		GFF3026	0.84	-0.4
3,100,867	-		GFF3026	0.84	+0.0
3,100,867	-		GFF3026	0.84	-0.6
3,100,874	+		GFF3026	0.85	-0.5
3,100,879	+		GFF3026	0.86	+0.8
3,100,879	+		GFF3026	0.86	-0.4
3,100,879	+		GFF3026	0.86	-0.0
3,100,884	+		GFF3026	0.86	-0.7
3,100,884	+		GFF3026	0.86	+0.9
3,100,884	+		GFF3026	0.86	+1.0
3,100,884	+		GFF3026	0.86	-1.2
3,100,887	-		GFF3026	0.87	-1.2
3,100,892	-		GFF3026	0.87	+0.4
3,100,892	-		GFF3026	0.87	+1.2
3,100,892	-		GFF3026	0.87	+0.4
3,100,892	-		GFF3026	0.87	+0.1
3,100,892	-		GFF3026	0.87	-0.2
3,100,892	-		GFF3026	0.87	-2.1
3,100,892	-		GFF3026	0.87	-0.2
3,100,906	+		GFF3026	0.89	-0.2
3,100,911	+		GFF3026	0.90	+0.4
3,100,925	+				+1.3
3,100,933	-				-0.5
3,100,933	-				+0.5
3,100,933	-				-1.3
3,100,933	-				+0.3
3,100,933	-				-3.0
3,100,945	+				+0.4
3,100,948	-				+1.6
3,100,950	+				+1.2
3,100,952	-				+1.1
3,100,962	+				+0.6
3,100,969	-				+0.3
3,100,981	+				-1.1
3,100,990	-				-1.2
3,101,004	+				-0.3
3,101,012	-				+0.8
3,101,017	+				+0.1
3,101,017	-				-0.9
3,101,026	+				-1.1
3,101,031	+				+2.1
3,101,031	+				+0.0
3,101,031	+				+0.6
3,101,031	+				+0.0
3,101,031	+				+0.7
3,101,031	+				-0.8
3,101,031	+				-0.5
3,101,031	+				-0.3
3,101,031	+				+1.1
3,101,031	+				-1.2
3,101,031	+				-0.3
3,101,031	+				-3.4
3,101,034	-				-1.9
3,101,039	-				-0.7
3,101,039	-				+0.5
3,101,039	-				-0.1
3,101,039	-				+0.2
3,101,039	-				+0.7
3,101,039	-				-0.3
3,101,039	-				+0.1
3,101,039	-				-0.1
3,101,039	-				+0.4
3,101,039	-				-0.3
3,101,039	-				-0.2
3,101,041	+				+0.4
3,101,044	-				+1.5
3,101,049	-				-0.9
3,101,049	-				-0.2
3,101,049	-				-0.8
3,101,049	-				-0.7
3,101,061	+				-0.7
3,101,062	+				+0.2
3,101,073	-				+0.1
3,101,076	+				-1.7
3,101,076	+				-1.3
3,101,078	+				+0.4
3,101,084	-				+0.9
3,101,085	-				+0.4
3,101,085	-				-1.0
3,101,086	-				-1.9
3,101,123	+				-0.6
3,101,123	+				-0.0
3,101,123	+				+0.2
3,101,123	+				-0.5
3,101,131	-				-0.7
3,101,131	-				+0.6
3,101,131	-				+1.9
3,101,149	+		GFF3027	0.11	+0.1
3,101,157	-		GFF3027	0.11	-0.6
3,101,183	-		GFF3027	0.14	-1.5
3,101,197	-		GFF3027	0.15	-0.9
3,101,198	+		GFF3027	0.15	-0.0
3,101,198	+		GFF3027	0.15	+0.1
3,101,198	-		GFF3027	0.15	+0.3
3,101,198	-		GFF3027	0.15	-0.6
3,101,247	+		GFF3027	0.20	-2.6
3,101,255	-		GFF3027	0.21	-0.2
3,101,272	+		GFF3027	0.22	-2.1
3,101,296	+		GFF3027	0.25	-1.9
3,101,303	+		GFF3027	0.25	-1.6
3,101,311	-		GFF3027	0.26	+0.6
3,101,315	+		GFF3027	0.26	-0.7
3,101,328	+		GFF3027	0.28	-0.7
3,101,342	-		GFF3027	0.29	-2.4
3,101,366	+		GFF3027	0.31	-0.5
3,101,374	-		GFF3027	0.32	+1.0
3,101,374	-		GFF3027	0.32	+0.4
3,101,374	-		GFF3027	0.32	-2.1
3,101,374	-		GFF3027	0.32	-0.1
3,101,374	-		GFF3027	0.32	+0.2
3,101,376	+		GFF3027	0.32	+0.5
3,101,384	-		GFF3027	0.33	-1.2
3,101,401	+		GFF3027	0.34	-1.9
3,101,401	+		GFF3027	0.34	-1.2
3,101,401	+		GFF3027	0.34	-0.2
3,101,407	+		GFF3027	0.35	-2.6
3,101,407	+		GFF3027	0.35	-2.1
3,101,409	-		GFF3027	0.35	-0.9
3,101,409	-		GFF3027	0.35	-0.6
3,101,409	-		GFF3027	0.35	+0.3
3,101,412	+		GFF3027	0.36	-0.1
3,101,412	+		GFF3027	0.36	-0.7
3,101,412	+		GFF3027	0.36	-0.9
3,101,412	+		GFF3027	0.36	-0.9
3,101,412	+		GFF3027	0.36	+0.0
3,101,415	-		GFF3027	0.36	-0.3
3,101,415	-		GFF3027	0.36	+0.2
3,101,415	-		GFF3027	0.36	+0.8
3,101,420	-		GFF3027	0.36	-0.7
3,101,420	-		GFF3027	0.36	-0.4
3,101,420	-		GFF3027	0.36	-0.3
3,101,420	-		GFF3027	0.36	-1.6
3,101,420	-		GFF3027	0.36	+0.1
3,101,420	-		GFF3027	0.36	-0.3
3,101,422	-		GFF3027	0.36	-1.3
3,101,424	+		GFF3027	0.37	-0.7
3,101,432	-		GFF3027	0.37	-1.8
3,101,439	-		GFF3027	0.38	-0.0
3,101,458	+		GFF3027	0.40	+0.7
3,101,458	+		GFF3027	0.40	-0.5
3,101,465	-		GFF3027	0.41	+0.2
3,101,485	+		GFF3027	0.42	+0.2
3,101,485	+		GFF3027	0.42	-2.9
3,101,485	+		GFF3027	0.42	-0.5
3,101,485	+		GFF3027	0.42	+0.1
3,101,485	+		GFF3027	0.42	-0.7
3,101,491	-		GFF3027	0.43	+1.7
3,101,493	-		GFF3027	0.43	+1.9
3,101,496	+		GFF3027	0.43	+1.2
3,101,496	+		GFF3027	0.43	+1.0
3,101,496	+		GFF3027	0.43	-0.7
3,101,498	+		GFF3027	0.44	+0.1
3,101,504	-		GFF3027	0.44	+0.0
3,101,504	-		GFF3027	0.44	-0.4
3,101,506	-		GFF3027	0.44	+0.3
3,101,523	+		GFF3027	0.46	+0.7
3,101,555	+		GFF3027	0.49	-1.2
3,101,555	+		GFF3027	0.49	-0.2
3,101,560	+		GFF3027	0.50	-1.7
3,101,563	-		GFF3027	0.50	+0.3
3,101,568	-		GFF3027	0.50	+1.1
3,101,568	-		GFF3027	0.50	-1.3
3,101,568	-		GFF3027	0.50	-2.1
3,101,621	-		GFF3027	0.55	-1.3
3,101,629	+		GFF3027	0.56	-0.5
3,101,639	-		GFF3027	0.57	-1.2
3,101,641	+		GFF3027	0.57	-0.9
3,101,641	+		GFF3027	0.57	-0.6
3,101,649	-		GFF3027	0.58	+0.9
3,101,649	-		GFF3027	0.58	-0.8
3,101,650	+		GFF3027	0.58	+0.8
3,101,651	+		GFF3027	0.58	-0.7
3,101,651	+		GFF3027	0.58	-1.1
3,101,651	+		GFF3027	0.58	-0.7
3,101,658	-		GFF3027	0.59	-0.7
3,101,659	-		GFF3027	0.59	+1.7
3,101,659	-		GFF3027	0.59	+0.8
3,101,659	-		GFF3027	0.59	-0.2
3,101,671	+		GFF3027	0.60	+0.8
3,101,677	+		GFF3027	0.61	+1.1
3,101,715	-		GFF3027	0.64	-0.3
3,101,721	-		GFF3027	0.65	-1.3
3,101,741	+		GFF3027	0.67	+0.2
3,101,741	+		GFF3027	0.67	-1.1
3,101,741	+		GFF3027	0.67	-1.7
3,101,741	+		GFF3027	0.67	-0.4
3,101,746	+		GFF3027	0.67	-1.3
3,101,746	+		GFF3027	0.67	+0.2
3,101,749	-		GFF3027	0.68	-0.7
3,101,749	-		GFF3027	0.68	-0.2
3,101,749	-		GFF3027	0.68	-0.2
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3,101,751	+		GFF3027	0.68	-2.4
3,101,751	+		GFF3027	0.68	-2.3
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3,101,800	+		GFF3027	0.72	+1.0
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3,101,926	+		GFF3027	0.84	-2.4
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3,101,939	-		GFF3027	0.86	-1.7
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3,101,939	-		GFF3027	0.86	+1.3
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3,101,952	+		GFF3027	0.87	+0.3
3,101,952	-		GFF3027	0.87	-0.8
3,101,962	-		GFF3027	0.88	-0.3
3,101,988	+				+0.3
3,101,988	+				-0.5
3,101,996	-				+0.5
3,101,996	-				-2.5
3,101,996	-				+0.2
3,102,003	-				-0.5
3,102,003	-				+0.1
3,102,004	-				+0.2
3,102,009	-				-1.2
3,102,009	-				-0.1
3,102,069	+				-1.4
3,102,069	+				+0.2
3,102,069	+				-1.3
3,102,111	-				-2.3
3,102,150	+				+1.4
3,102,150	+				+0.3
3,102,158	-				+1.0
3,102,158	-				+0.3
3,102,158	-				-1.2
3,102,158	-				+0.8
3,102,158	-				-1.7
3,102,158	-				+0.4
3,102,163	-				-2.8
3,102,167	+				+1.8
3,102,167	+				+0.8
3,102,174	-				+1.2
3,102,175	-				+0.7
3,102,175	-				-2.5
3,102,176	+				-1.4
3,102,176	+				-1.6
3,102,184	-				-1.2
3,102,184	-				+0.9
3,102,196	+				-0.5
3,102,204	-				+0.0
3,102,204	-				+0.1
3,102,204	-				+0.5
3,102,204	-				-1.6
3,102,205	+				+0.1
3,102,205	+				+0.8
3,102,205	+				+0.8
3,102,213	-				-0.5
3,102,239	+		GFF3028	0.10	-0.6
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3,102,369	-		GFF3028	0.19	-2.9
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