Strain Fitness in Sphingobium sp. HT1-2 around GFF3019

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,084,903	+		GFF3017	0.80	-1.1
3,084,908	+		GFF3017	0.80	-1.4
3,084,908	+		GFF3017	0.80	+0.6
3,084,908	+		GFF3017	0.80	-0.6
3,084,908	+		GFF3017	0.80	+0.2
3,084,908	+		GFF3017	0.80	-1.4
3,084,908	+		GFF3017	0.80	-0.6
3,084,908	+		GFF3017	0.80	-0.9
3,084,908	+		GFF3017	0.80	-1.2
3,084,908	+		GFF3017	0.80	-0.6
3,084,908	+		GFF3017	0.80	-0.4
3,084,908	+		GFF3017	0.80	-0.9
3,084,908	+		GFF3017	0.80	-0.7
3,084,908	+		GFF3017	0.80	+0.8
3,084,908	+		GFF3017	0.80	-1.3
3,084,908	+		GFF3017	0.80	+0.1
3,084,908	+		GFF3017	0.80	+0.6
3,084,908	+		GFF3017	0.80	+0.4
3,084,908	+		GFF3017	0.80	+1.0
3,084,916	-		GFF3017	0.81	-0.4
3,084,916	-		GFF3017	0.81	-0.2
3,084,916	-		GFF3017	0.81	-1.8
3,084,916	-		GFF3017	0.81	-1.3
3,084,916	-		GFF3017	0.81	+0.8
3,084,916	-		GFF3017	0.81	-0.3
3,084,916	-		GFF3017	0.81	-0.1
3,084,916	-		GFF3017	0.81	-2.3
3,084,916	-		GFF3017	0.81	+0.1
3,084,916	-		GFF3017	0.81	-0.3
3,084,916	-		GFF3017	0.81	+1.3
3,084,959	+		GFF3017	0.83	-0.2
3,084,964	+		GFF3017	0.84	-0.6
3,084,973	+		GFF3017	0.84	-0.4
3,084,981	-		GFF3017	0.85	+0.1
3,084,981	-		GFF3017	0.85	-0.2
3,084,981	-		GFF3017	0.85	+0.0
3,084,991	-		GFF3017	0.86	-0.6
3,085,013	+		GFF3017	0.87	-0.1
3,085,019	+		GFF3017	0.88	+0.9
3,085,019	+		GFF3017	0.88	+0.6
3,085,022	-		GFF3017	0.88	-0.1
3,085,027	-		GFF3017	0.88	-2.3
3,085,056	+				+0.3
3,085,056	+				+1.2
3,085,056	+				-1.0
3,085,056	+				-1.5
3,085,064	-				+0.8
3,085,064	-				-0.8
3,085,064	-				-1.7
3,085,065	+				-0.9
3,085,080	+				-0.5
3,085,080	+				-0.8
3,085,088	+				+0.3
3,085,088	-				+0.1
3,085,090	+				-0.5
3,085,114	+				+1.0
3,085,114	+				-1.0
3,085,122	-				+0.4
3,085,153	-				+0.6
3,085,155	-				-0.2
3,085,157	+				-1.0
3,085,157	+				+1.3
3,085,164	+				-0.4
3,085,165	-				+0.9
3,085,175	-				-2.3
3,085,177	-				+1.3
3,085,177	-				-0.9
3,085,187	-				-0.8
3,085,189	+				-2.3
3,085,189	+				+0.0
3,085,191	+				-0.6
3,085,191	+				-1.5
3,085,191	+				+0.6
3,085,191	+				-0.2
3,085,191	+				-1.2
3,085,197	-				-1.0
3,085,199	-				-0.3
3,085,199	-				+0.4
3,085,199	-				-1.0
3,085,201	+				-2.1
3,085,204	-				-2.3
3,085,204	-				+0.1
3,085,206	+				-0.8
3,085,222	-				+0.2
3,085,265	+				+0.6
3,085,265	+				-1.6
3,085,265	+				-2.1
3,085,265	+				-1.2
3,085,265	+				+1.1
3,085,275	-				+1.4
3,085,295	+				+0.8
3,085,295	+				+0.3
3,085,297	+				-0.8
3,085,303	-				+0.9
3,085,307	+				+0.8
3,085,307	+				-1.5
3,085,307	+				-0.1
3,085,313	-				+0.1
3,085,315	-				+0.0
3,085,322	+				+1.0
3,085,335	+		GFF3018	0.10	+1.1
3,085,337	+		GFF3018	0.11	+1.2
3,085,343	-		GFF3018	0.12	+0.9
3,085,349	+		GFF3018	0.12	-0.5
3,085,363	-		GFF3018	0.15	+0.1
3,085,412	+		GFF3018	0.22	-1.3
3,085,414	+		GFF3018	0.23	-2.1
3,085,414	+		GFF3018	0.23	+0.8
3,085,420	-		GFF3018	0.24	-1.6
3,085,420	-		GFF3018	0.24	+0.2
3,085,420	-		GFF3018	0.24	+0.3
3,085,422	-		GFF3018	0.24	-0.4
3,085,427	-		GFF3018	0.25	+1.1
3,085,436	+		GFF3018	0.26	-1.6
3,085,436	+		GFF3018	0.26	-2.6
3,085,436	+		GFF3018	0.26	+0.7
3,085,436	+		GFF3018	0.26	+0.4
3,085,436	+		GFF3018	0.26	-1.3
3,085,444	-		GFF3018	0.27	-2.0
3,085,444	-		GFF3018	0.27	-0.2
3,085,444	-		GFF3018	0.27	+0.9
3,085,446	+		GFF3018	0.28	+0.4
3,085,446	+		GFF3018	0.28	+0.4
3,085,446	+		GFF3018	0.28	-0.1
3,085,454	-		GFF3018	0.29	-0.3
3,085,454	-		GFF3018	0.29	-1.4
3,085,454	-		GFF3018	0.29	-0.5
3,085,454	-		GFF3018	0.29	-0.4
3,085,454	-		GFF3018	0.29	+0.2
3,085,454	-		GFF3018	0.29	-0.4
3,085,454	-		GFF3018	0.29	-0.5
3,085,454	-		GFF3018	0.29	+0.2
3,085,460	-		GFF3018	0.30	-0.0
3,085,462	+		GFF3018	0.30	-0.8
3,085,465	+		GFF3018	0.31	-0.7
3,085,485	-		GFF3018	0.34	-2.6
3,085,512	+		GFF3018	0.38	-1.2
3,085,512	+		GFF3018	0.38	-0.2
3,085,512	+		GFF3018	0.38	-0.4
3,085,512	+		GFF3018	0.38	-0.5
3,085,520	-		GFF3018	0.39	+0.2
3,085,520	-		GFF3018	0.39	-1.9
3,085,520	-		GFF3018	0.39	-1.8
3,085,520	-		GFF3018	0.39	+1.3
3,085,520	-		GFF3018	0.39	-1.9
3,085,520	-		GFF3018	0.39	+0.7
3,085,531	+		GFF3018	0.41	+0.3
3,085,540	+		GFF3018	0.43	-1.8
3,085,540	+		GFF3018	0.43	-0.2
3,085,548	-		GFF3018	0.44	-0.7
3,085,548	-		GFF3018	0.44	-0.4
3,085,559	-		GFF3018	0.46	-0.2
3,085,566	-		GFF3018	0.47	+1.0
3,085,566	-		GFF3018	0.47	+0.7
3,085,587	-		GFF3018	0.50	-0.4
3,085,640	-		GFF3018	0.58	+0.4
3,085,651	+		GFF3018	0.60	+0.9
3,085,651	+		GFF3018	0.60	+0.7
3,085,654	-		GFF3018	0.61	-1.4
3,085,659	-		GFF3018	0.61	+0.9
3,085,667	+		GFF3018	0.63	+0.0
3,085,677	-		GFF3018	0.64	-1.7
3,085,761	+		GFF3018	0.78	+0.3
3,085,761	+		GFF3018	0.78	-0.8
3,085,765	+		GFF3018	0.78	-0.7
3,085,768	-		GFF3018	0.79	-0.9
3,085,769	-		GFF3018	0.79	-0.1
3,085,769	-		GFF3018	0.79	+0.7
3,085,821	+		GFF3018	0.87	-0.3
3,085,846	-				-0.5
3,085,856	-				-2.5
3,085,865	+				+0.3
3,085,869	+				-0.8
3,085,877	-				-0.2
3,085,878	-				+0.5
3,085,878	-				+0.2
3,085,878	-				+1.3
3,085,884	+				+0.9
3,085,887	-				-1.5
3,085,894	+				+0.0
3,085,894	+				-0.6
3,085,897	-				+1.0
3,085,920	+				+0.8
3,085,925	+				-1.8
3,085,925	+				-1.1
3,085,925	+				-0.6
3,085,933	-				-1.4
3,085,933	-				-0.2
3,085,933	-				-0.7
3,085,933	-				-2.5
3,085,933	-				-0.5
3,085,933	-				-0.9
3,085,936	+				+0.1
3,085,954	-				+0.3
3,085,956	+				+0.6
3,085,959	-				-1.3
3,085,961	+				-0.3
3,085,961	+				-2.1
3,085,961	+				-2.0
3,085,969	-				+0.0
3,085,971	+				-0.2
3,085,971	+				+1.4
3,085,981	+				-0.7
3,085,989	-				+0.7
3,085,989	-				-0.3
3,086,001	+				+1.3
3,086,001	+				+0.3
3,086,001	+				-1.7
3,086,007	-				-0.4
3,086,009	-				-1.0
3,086,018	+				-0.1
3,086,018	+				-0.1
3,086,018	+				-0.6
3,086,018	+				-2.1
3,086,019	+				+0.3
3,086,019	+				-0.3
3,086,019	+				+1.1
3,086,026	-				-1.2
3,086,026	-				-1.1
3,086,026	-				+1.2
3,086,026	-				+1.3
3,086,026	-				-1.2
3,086,026	-				-3.0
3,086,027	-				-0.9
3,086,027	-				-1.2
3,086,027	-				+0.0
3,086,028	+				-0.2
3,086,031	-				-2.4
3,086,036	-				-0.3
3,086,092	+		GFF3019	0.11	+1.3
3,086,117	+		GFF3019	0.13	+0.8
3,086,156	+		GFF3019	0.15	-0.7
3,086,156	+		GFF3019	0.15	+0.2
3,086,174	-		GFF3019	0.16	-2.7
3,086,185	+		GFF3019	0.17	+0.2
3,086,193	-		GFF3019	0.17	-0.5
3,086,195	+		GFF3019	0.17	-0.3
3,086,200	+		GFF3019	0.18	-2.4
3,086,208	-		GFF3019	0.18	-1.7
3,086,213	+		GFF3019	0.18	-0.8
3,086,213	-		GFF3019	0.18	-0.4
3,086,218	+		GFF3019	0.19	+0.6
3,086,218	+		GFF3019	0.19	-0.4
3,086,218	+		GFF3019	0.19	-0.1
3,086,219	+		GFF3019	0.19	+1.0
3,086,226	-		GFF3019	0.19	+0.1
3,086,226	-		GFF3019	0.19	+0.2
3,086,285	+		GFF3019	0.23	-0.9
3,086,317	-		GFF3019	0.25	+0.7
3,086,328	+		GFF3019	0.25	+1.6
3,086,330	+		GFF3019	0.25	-1.0
3,086,330	+		GFF3019	0.25	+0.1
3,086,330	+		GFF3019	0.25	-1.3
3,086,336	-		GFF3019	0.26	-2.1
3,086,336	-		GFF3019	0.26	+1.0
3,086,338	-		GFF3019	0.26	+0.9
3,086,357	+		GFF3019	0.27	+0.0
3,086,370	-		GFF3019	0.28	-0.2
3,086,404	+		GFF3019	0.30	+0.4
3,086,404	+		GFF3019	0.30	+0.4
3,086,404	+		GFF3019	0.30	+1.3
3,086,404	+		GFF3019	0.30	-0.9
3,086,409	+		GFF3019	0.30	-2.3
3,086,409	+		GFF3019	0.30	+0.4
3,086,412	-		GFF3019	0.30	+0.0
3,086,414	+		GFF3019	0.30	-3.6
3,086,414	+		GFF3019	0.30	-0.5
3,086,414	+		GFF3019	0.30	-0.1
3,086,417	-		GFF3019	0.31	+0.1
3,086,417	-		GFF3019	0.31	+0.0
3,086,417	-		GFF3019	0.31	-0.7
3,086,417	-		GFF3019	0.31	-0.1
3,086,429	+		GFF3019	0.31	-2.9
3,086,440	+		GFF3019	0.32	-0.1
3,086,440	+		GFF3019	0.32	-2.4
3,086,450	+		GFF3019	0.33	-1.5
3,086,460	+		GFF3019	0.33	-0.9
3,086,478	-		GFF3019	0.34	-0.5
3,086,526	+		GFF3019	0.37	-0.2
3,086,526	+		GFF3019	0.37	+0.8
3,086,536	-		GFF3019	0.38	-1.6
3,086,552	+		GFF3019	0.39	+0.7
3,086,554	-		GFF3019	0.39	-0.7
3,086,555	-		GFF3019	0.39	-2.8
3,086,560	-		GFF3019	0.39	-0.1
3,086,574	-		GFF3019	0.40	+1.3
3,086,576	+		GFF3019	0.40	-2.3
3,086,576	+		GFF3019	0.40	-1.3
3,086,586	+		GFF3019	0.41	-0.3
3,086,599	+		GFF3019	0.41	+0.6
3,086,604	+		GFF3019	0.42	-0.7
3,086,604	+		GFF3019	0.42	+0.6
3,086,604	+		GFF3019	0.42	+0.6
3,086,604	+		GFF3019	0.42	-1.4
3,086,607	-		GFF3019	0.42	-0.6
3,086,612	-		GFF3019	0.42	-0.1
3,086,612	-		GFF3019	0.42	-1.6
3,086,612	-		GFF3019	0.42	-1.2
3,086,617	+		GFF3019	0.42	-1.4
3,086,617	+		GFF3019	0.42	+0.5
3,086,617	+		GFF3019	0.42	+0.3
3,086,617	+		GFF3019	0.42	+0.2
3,086,617	+		GFF3019	0.42	-0.0
3,086,618	-		GFF3019	0.43	-1.5
3,086,624	-		GFF3019	0.43	-0.5
3,086,625	-		GFF3019	0.43	+0.1
3,086,625	-		GFF3019	0.43	-0.6
3,086,625	-		GFF3019	0.43	-0.5
3,086,625	-		GFF3019	0.43	+0.0
3,086,625	-		GFF3019	0.43	-0.9
3,086,627	+		GFF3019	0.43	-0.6
3,086,627	+		GFF3019	0.43	-0.3
3,086,627	+		GFF3019	0.43	-1.6
3,086,627	+		GFF3019	0.43	-2.9
3,086,627	+		GFF3019	0.43	-0.1
3,086,627	+		GFF3019	0.43	-1.5
3,086,627	+		GFF3019	0.43	-0.2
3,086,627	+		GFF3019	0.43	-3.0
3,086,627	+		GFF3019	0.43	+0.3
3,086,627	+		GFF3019	0.43	+1.0
3,086,627	+		GFF3019	0.43	-2.5
3,086,627	+		GFF3019	0.43	-1.3
3,086,627	+		GFF3019	0.43	+0.2
3,086,627	+		GFF3019	0.43	-1.5
3,086,627	+		GFF3019	0.43	-0.7
3,086,627	+		GFF3019	0.43	+1.2
3,086,627	+		GFF3019	0.43	-2.2
3,086,627	+		GFF3019	0.43	-0.5
3,086,627	+		GFF3019	0.43	-1.2
3,086,627	+		GFF3019	0.43	-1.8
3,086,634	+		GFF3019	0.43	+0.4
3,086,635	-		GFF3019	0.44	-0.3
3,086,635	-		GFF3019	0.44	+0.8
3,086,635	-		GFF3019	0.44	-0.3
3,086,635	-		GFF3019	0.44	+1.3
3,086,635	-		GFF3019	0.44	-0.9
3,086,635	-		GFF3019	0.44	+0.2
3,086,635	-		GFF3019	0.44	+0.3
3,086,635	-		GFF3019	0.44	+0.6
3,086,635	-		GFF3019	0.44	+0.7
3,086,635	-		GFF3019	0.44	-0.3
3,086,635	-		GFF3019	0.44	+0.0
3,086,635	-		GFF3019	0.44	-0.2
3,086,635	-		GFF3019	0.44	+1.1
3,086,635	-		GFF3019	0.44	-1.2
3,086,635	-		GFF3019	0.44	-1.6
3,086,635	-		GFF3019	0.44	+0.5
3,086,635	-		GFF3019	0.44	+0.7
3,086,635	-		GFF3019	0.44	+0.9
3,086,635	-		GFF3019	0.44	+0.0
3,086,635	-		GFF3019	0.44	-0.7
3,086,635	-		GFF3019	0.44	-0.4
3,086,635	-		GFF3019	0.44	-2.3
3,086,635	-		GFF3019	0.44	+0.1
3,086,635	-		GFF3019	0.44	-1.3
3,086,635	-		GFF3019	0.44	-0.7
3,086,635	-		GFF3019	0.44	+0.2
3,086,639	+		GFF3019	0.44	-1.6
3,086,640	+		GFF3019	0.44	-1.2
3,086,640	+		GFF3019	0.44	+0.7
3,086,641	-		GFF3019	0.44	-0.3
3,086,642	-		GFF3019	0.44	+0.2
3,086,645	+		GFF3019	0.44	-1.3
3,086,645	+		GFF3019	0.44	-1.2
3,086,646	+		GFF3019	0.44	-0.8
3,086,646	+		GFF3019	0.44	+0.9
3,086,648	-		GFF3019	0.44	-2.4
3,086,648	-		GFF3019	0.44	-2.4
3,086,648	-		GFF3019	0.44	-1.9
3,086,648	-		GFF3019	0.44	-0.8
3,086,648	-		GFF3019	0.44	-0.7
3,086,648	-		GFF3019	0.44	+0.4
3,086,648	-		GFF3019	0.44	-2.3
3,086,653	+		GFF3019	0.45	-2.3
3,086,653	+		GFF3019	0.45	-2.6
3,086,653	-		GFF3019	0.45	-0.8
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3,086,682	-		GFF3019	0.46	-0.8
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3,086,759	+		GFF3019	0.51	-2.4
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3,086,767	-		GFF3019	0.51	-0.6
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3,086,815	+		GFF3019	0.54	+0.9
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3,086,839	+		GFF3019	0.56	+0.7
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3,086,915	-		GFF3019	0.60	+0.0
3,086,920	+		GFF3019	0.60	-0.1
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3,087,017	-		GFF3019	0.66	-3.1
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3,087,250	+		GFF3019	0.80	-1.8
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3,087,290	+		GFF3019	0.82	-1.7
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3,087,374	+		GFF3019	0.87	-0.1
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3,087,389	+		GFF3019	0.88	+1.1
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3,087,389	+		GFF3019	0.88	-0.1
3,087,389	+		GFF3019	0.88	-1.4
3,087,389	+		GFF3019	0.88	+0.4
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3,087,397	-		GFF3019	0.89	-0.5
3,087,397	-		GFF3019	0.89	-1.5
3,087,397	-		GFF3019	0.89	+0.3
3,087,397	-		GFF3019	0.89	+1.2
3,087,410	-		GFF3019	0.90	+0.9
3,087,428	+				-1.7
3,087,437	-				-0.4
3,087,443	+				-0.5
3,087,481	+				-0.7
3,087,522	+				+0.4
3,087,533	+				+0.6
3,087,536	-				-0.4
3,087,552	+				-0.3
3,087,560	-				+0.8
3,087,560	-				-0.3
3,087,572	+				+0.2
3,087,572	-				-0.1
3,087,585	-				-0.7
3,087,590	+				-0.8
3,087,597	+				+0.2
3,087,612	+				+0.7
3,087,632	+				-0.4
3,087,654	-				-1.3
3,087,664	+				-0.3
3,087,664	-				+0.8
3,087,666	+				-0.4
3,087,666	+				-1.4
3,087,666	+				+0.1
3,087,666	+				+1.0
3,087,666	+				-0.6
3,087,666	+				+0.2
3,087,666	+				-1.2
3,087,666	+				-0.9
3,087,666	+				-2.9
3,087,666	+				+0.2
3,087,666	+				-1.0
3,087,666	+				+0.8
3,087,666	+				+1.0
3,087,666	+				-2.3
3,087,666	+				+0.5
3,087,666	+				+0.6
3,087,672	-				-0.5
3,087,674	-				-2.0
3,087,674	-				+0.2
3,087,674	-				-0.3
3,087,674	-				+0.3
3,087,674	-				-1.0
3,087,674	-				+0.1
3,087,674	-				-0.5
3,087,674	-				+0.7
3,087,674	-				+0.3
3,087,674	-				+0.2
3,087,674	-				+1.0
3,087,709	-				-1.7
3,087,711	+				+0.0
3,087,722	+				-0.5
3,087,722	+				-0.4
3,087,722	+				-1.7
3,087,722	+				+0.9
3,087,722	+				+0.3
3,087,727	+				+0.3
3,087,730	-				-1.0
3,087,730	-				-1.5
3,087,732	+				+1.4
3,087,732	+				+1.4
3,087,760	+				-0.6
3,087,768	-				-2.5
3,087,808	+				-0.8
3,087,813	+				+0.2
3,087,821	-				+0.9
3,087,845	-				+0.9
3,087,845	-				-0.1
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3,087,846	+				+0.5
3,087,852	+				-1.0
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3,087,977	-		GFF3020	0.15	+1.4
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3,087,986	+		GFF3020	0.15	+1.3
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3,088,333	+		GFF3020	0.30	+1.1
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