Strain Fitness in Sphingobium sp. HT1-2 around GFF2985

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,038,784	-		GFF2984	0.52	+0.4
3,038,791	+		GFF2984	0.52	+0.4
3,038,791	+		GFF2984	0.52	+2.0
3,038,791	+		GFF2984	0.52	-1.2
3,038,791	+		GFF2984	0.52	+0.4
3,038,791	+		GFF2984	0.52	-1.2
3,038,791	+		GFF2984	0.52	+0.5
3,038,791	+		GFF2984	0.52	-0.8
3,038,791	+		GFF2984	0.52	+0.2
3,038,791	+		GFF2984	0.52	-1.0
3,038,792	+		GFF2984	0.52	-1.5
3,038,792	+		GFF2984	0.52	+0.4
3,038,792	+		GFF2984	0.52	-0.4
3,038,799	-		GFF2984	0.53	-0.5
3,038,799	-		GFF2984	0.53	-0.6
3,038,799	-		GFF2984	0.53	-0.9
3,038,799	-		GFF2984	0.53	+0.7
3,038,799	-		GFF2984	0.53	+0.3
3,038,799	-		GFF2984	0.53	+0.1
3,038,799	-		GFF2984	0.53	-1.3
3,038,799	-		GFF2984	0.53	+0.5
3,038,806	+		GFF2984	0.53	+0.0
3,038,806	+		GFF2984	0.53	+1.0
3,038,806	+		GFF2984	0.53	-0.3
3,038,815	+		GFF2984	0.54	+0.4
3,038,823	-		GFF2984	0.54	-1.0
3,038,832	+		GFF2984	0.54	-1.6
3,038,839	+		GFF2984	0.55	-2.3
3,038,848	+		GFF2984	0.55	+0.5
3,038,856	-		GFF2984	0.56	+0.1
3,038,890	+		GFF2984	0.57	-1.6
3,038,890	+		GFF2984	0.57	+0.2
3,038,890	+		GFF2984	0.57	-0.0
3,038,890	+		GFF2984	0.57	-2.6
3,038,898	-		GFF2984	0.58	-0.5
3,038,903	-		GFF2984	0.58	-1.3
3,038,922	+		GFF2984	0.59	+0.3
3,038,927	+		GFF2984	0.59	-0.1
3,038,927	+		GFF2984	0.59	-1.0
3,038,947	-		GFF2984	0.60	+0.2
3,038,947	-		GFF2984	0.60	-1.6
3,038,959	+		GFF2984	0.61	-1.2
3,038,962	-		GFF2984	0.61	-0.4
3,038,982	-		GFF2984	0.62	-0.6
3,038,989	-		GFF2984	0.62	-0.9
3,039,015	+		GFF2984	0.63	-1.0
3,039,015	+		GFF2984	0.63	-0.4
3,039,023	-		GFF2984	0.64	+0.2
3,039,043	+		GFF2984	0.65	+1.1
3,039,046	-		GFF2984	0.65	-0.6
3,039,068	-		GFF2984	0.66	+0.2
3,039,084	+		GFF2984	0.67	-1.7
3,039,084	-		GFF2984	0.67	+2.0
3,039,096	+		GFF2984	0.67	+0.0
3,039,114	-		GFF2984	0.68	-0.6
3,039,116	+		GFF2984	0.68	-1.8
3,039,118	+		GFF2984	0.68	-0.9
3,039,118	+		GFF2984	0.68	-1.4
3,039,118	+		GFF2984	0.68	-2.4
3,039,126	-		GFF2984	0.69	+0.1
3,039,126	-		GFF2984	0.69	-0.2
3,039,126	-		GFF2984	0.69	+1.1
3,039,126	-		GFF2984	0.69	-0.1
3,039,126	-		GFF2984	0.69	-0.5
3,039,128	-		GFF2984	0.69	+1.0
3,039,191	-		GFF2984	0.72	+1.3
3,039,200	+		GFF2984	0.72	-0.4
3,039,210	-		GFF2984	0.73	-1.9
3,039,212	+		GFF2984	0.73	-3.0
3,039,215	-		GFF2984	0.73	-2.1
3,039,217	+		GFF2984	0.73	-0.8
3,039,220	-		GFF2984	0.73	-0.5
3,039,220	-		GFF2984	0.73	-2.7
3,039,225	-		GFF2984	0.74	-0.6
3,039,232	+		GFF2984	0.74	+0.1
3,039,238	-		GFF2984	0.74	+0.1
3,039,240	-		GFF2984	0.74	-0.6
3,039,240	-		GFF2984	0.74	-0.9
3,039,240	-		GFF2984	0.74	-0.1
3,039,261	-		GFF2984	0.75	-0.9
3,039,277	+		GFF2984	0.76	-2.4
3,039,284	+		GFF2984	0.76	-1.8
3,039,289	+		GFF2984	0.77	+0.2
3,039,289	+		GFF2984	0.77	-0.2
3,039,292	-		GFF2984	0.77	-1.0
3,039,308	-		GFF2984	0.78	-0.7
3,039,324	+		GFF2984	0.78	-0.5
3,039,324	-		GFF2984	0.78	-1.5
3,039,324	-		GFF2984	0.78	-0.3
3,039,324	-		GFF2984	0.78	+0.8
3,039,324	-		GFF2984	0.78	+0.1
3,039,330	+		GFF2984	0.79	-0.9
3,039,364	+		GFF2984	0.80	+1.1
3,039,372	-		GFF2984	0.81	-1.5
3,039,376	+		GFF2984	0.81	-1.2
3,039,377	-		GFF2984	0.81	+0.0
3,039,390	+		GFF2984	0.82	-1.3
3,039,398	-		GFF2984	0.82	-1.0
3,039,417	+		GFF2984	0.83	+0.7
3,039,417	+		GFF2984	0.83	+0.3
3,039,439	+		GFF2984	0.84	+1.4
3,039,439	+		GFF2984	0.84	-0.5
3,039,439	+		GFF2984	0.84	+0.3
3,039,446	-		GFF2984	0.84	+0.5
3,039,447	-		GFF2984	0.84	-1.5
3,039,458	+		GFF2984	0.85	+1.1
3,039,494	-		GFF2984	0.87	-0.7
3,039,494	-		GFF2984	0.87	+0.4
3,039,494	-		GFF2984	0.87	-1.5
3,039,500	-		GFF2984	0.87	+0.3
3,039,512	+		GFF2984	0.88	+0.5
3,039,512	+		GFF2984	0.88	+0.1
3,039,512	+		GFF2984	0.88	-0.5
3,039,512	+		GFF2984	0.88	+0.2
3,039,512	+		GFF2984	0.88	+0.4
3,039,518	-		GFF2984	0.88	+1.5
3,039,520	-		GFF2984	0.88	-0.5
3,039,520	-		GFF2984	0.88	-0.6
3,039,520	-		GFF2984	0.88	-0.6
3,039,520	-		GFF2984	0.88	+0.1
3,039,528	+		GFF2984	0.88	-2.1
3,039,528	+		GFF2984	0.88	-0.3
3,039,541	+		GFF2984	0.89	-2.3
3,039,549	-		GFF2984	0.89	-1.9
3,039,560	+		GFF2984	0.90	-0.3
3,039,594	+				-0.1
3,039,602	-				-0.0
3,039,605	+				+0.5
3,039,613	-				-1.2
3,039,629	-				+0.3
3,039,645	+				-0.7
3,039,645	+				+0.3
3,039,650	+				-0.8
3,039,664	-				-1.7
3,039,675	-				-0.2
3,039,682	+				-1.4
3,039,683	+				+0.7
3,039,683	+				-1.4
3,039,688	+				-0.3
3,039,691	-				-0.5
3,039,697	+				-2.4
3,039,701	-				-0.4
3,039,719	-				-0.3
3,039,727	-				-0.4
3,039,734	+				-0.1
3,039,734	+				+0.3
3,039,742	-				-0.3
3,039,748	+				-0.1
3,039,757	-				-1.0
3,039,759	+				-1.6
3,039,768	-				-0.1
3,039,778	-				-0.4
3,039,806	+				-0.7
3,039,806	+				-1.4
3,039,807	+				-0.7
3,039,808	+				-1.3
3,039,808	+				-0.4
3,039,813	+				-0.7
3,039,813	+				-1.0
3,039,813	+				-1.8
3,039,813	+				+0.2
3,039,814	-				-0.4
3,039,814	-				-0.8
3,039,818	+				-1.3
3,039,818	+				+0.5
3,039,818	+				-0.8
3,039,820	+				+0.6
3,039,821	-				-1.8
3,039,825	+				-0.2
3,039,828	-				-0.2
3,039,830	+				-1.5
3,039,830	+				-1.3
3,039,830	+				-0.3
3,039,838	+				-0.6
3,039,838	-				+0.4
3,039,838	-				+0.5
3,039,849	+		GFF2985	0.12	-1.3
3,039,856	-		GFF2985	0.13	-0.2
3,039,863	-		GFF2985	0.14	-1.0
3,039,872	+		GFF2985	0.16	-0.1
3,039,880	-		GFF2985	0.17	+0.9
3,039,884	-		GFF2985	0.18	-0.2
3,039,885	-		GFF2985	0.18	-0.5
3,039,899	+		GFF2985	0.20	+0.1
3,039,899	+		GFF2985	0.20	+0.4
3,039,899	-		GFF2985	0.20	+0.3
3,039,900	+		GFF2985	0.20	-1.0
3,039,900	+		GFF2985	0.20	+0.3
3,039,901	-		GFF2985	0.20	+0.4
3,039,920	+		GFF2985	0.24	-2.1
3,039,928	-		GFF2985	0.25	-0.2
3,039,938	+		GFF2985	0.27	-1.6
3,039,938	+		GFF2985	0.27	-0.9
3,039,941	+		GFF2985	0.27	-0.2
3,039,960	+		GFF2985	0.30	+0.3
3,039,960	+		GFF2985	0.30	-0.6
3,039,963	-		GFF2985	0.31	-0.9
3,039,965	+		GFF2985	0.31	-0.5
3,039,968	-		GFF2985	0.32	-1.8
3,039,968	-		GFF2985	0.32	-0.5
3,039,968	-		GFF2985	0.32	-0.9
3,039,973	-		GFF2985	0.33	-1.2
3,039,973	-		GFF2985	0.33	+0.3
3,040,016	+		GFF2985	0.40	-0.1
3,040,016	+		GFF2985	0.40	-1.5
3,040,016	+		GFF2985	0.40	-1.2
3,040,016	+		GFF2985	0.40	-0.4
3,040,016	+		GFF2985	0.40	+1.1
3,040,019	-		GFF2985	0.40	-1.3
3,040,019	-		GFF2985	0.40	-1.3
3,040,025	-		GFF2985	0.41	-1.4
3,040,027	+		GFF2985	0.42	-1.0
3,040,031	+		GFF2985	0.42	-1.4
3,040,035	-		GFF2985	0.43	+0.0
3,040,048	+		GFF2985	0.45	-1.4
3,040,063	+		GFF2985	0.48	-0.1
3,040,063	+		GFF2985	0.48	-1.2
3,040,071	-		GFF2985	0.49	-2.3
3,040,071	-		GFF2985	0.49	+1.0
3,040,075	-		GFF2985	0.50	+0.1
3,040,082	+		GFF2985	0.51	+0.3
3,040,082	+		GFF2985	0.51	-0.5
3,040,090	-		GFF2985	0.52	-0.3
3,040,090	-		GFF2985	0.52	+0.6
3,040,102	-		GFF2985	0.54	+0.3
3,040,102	-		GFF2985	0.54	-2.4
3,040,102	-		GFF2985	0.54	-1.1
3,040,111	+		GFF2985	0.56	+0.3
3,040,111	+		GFF2985	0.56	+0.6
3,040,111	+		GFF2985	0.56	+0.2
3,040,111	-		GFF2985	0.56	-0.5
3,040,126	-		GFF2985	0.59	+1.2
3,040,143	+		GFF2985	0.61	-1.5
3,040,143	+		GFF2985	0.61	+1.3
3,040,143	-		GFF2985	0.61	-0.4
3,040,153	+		GFF2985	0.63	+1.6
3,040,153	+		GFF2985	0.63	+1.4
3,040,153	+		GFF2985	0.63	+0.3
3,040,158	+		GFF2985	0.64	+0.9
3,040,161	-		GFF2985	0.64	+1.3
3,040,161	-		GFF2985	0.64	-0.3
3,040,183	+		GFF2985	0.68	-0.4
3,040,235	-		GFF2985	0.77	+0.3
3,040,240	-		GFF2985	0.78	-2.8
3,040,258	+		GFF2985	0.81	-0.1
3,040,258	+		GFF2985	0.81	+0.1
3,040,259	+		GFF2985	0.81	-1.4
3,040,263	+		GFF2985	0.82	-1.9
3,040,266	-		GFF2985	0.82	+0.9
3,040,266	-		GFF2985	0.82	-0.6
3,040,266	-		GFF2985	0.82	-1.3
3,040,266	-		GFF2985	0.82	+0.9
3,040,268	-		GFF2985	0.83	-0.2
3,040,270	+		GFF2985	0.83	-1.7
3,040,275	+		GFF2985	0.84	+0.4
3,040,278	-		GFF2985	0.84	-1.1
3,040,282	+		GFF2985	0.85	-0.1
3,040,283	-		GFF2985	0.85	-1.3
3,040,284	+		GFF2985	0.85	-1.8
3,040,284	+		GFF2985	0.85	+0.6
3,040,284	+		GFF2985	0.85	+0.9
3,040,284	+		GFF2985	0.85	-2.0
3,040,292	-		GFF2985	0.87	+0.4
3,040,294	-		GFF2985	0.87	+1.5
3,040,307	-		GFF2985	0.89	-0.6
3,040,307	-		GFF2985	0.89	+0.5
3,040,307	-		GFF2985	0.89	+1.4
3,040,317	-				+0.1
3,040,340	+				+0.9
3,040,369	-				-0.7
3,040,376	-				-0.8
3,040,378	+				-0.5
3,040,386	-				+0.7
3,040,386	-				+0.3
3,040,386	-				-0.4
3,040,386	-				-0.6
3,040,386	-				-1.6
3,040,386	-				-0.2
3,040,390	+				-0.2
3,040,397	+				-1.5
3,040,397	+				+0.7
3,040,405	-				-1.6
3,040,420	+				-0.6
3,040,458	+				+0.5
3,040,460	-				-0.5
3,040,464	+				-0.7
3,040,468	+				-1.0
3,040,468	+				+0.7
3,040,469	+				+1.1
3,040,469	+				-0.8
3,040,474	+				-0.5
3,040,477	-				+0.9
3,040,479	+				-1.4
3,040,497	-				+0.6
3,040,520	-				-0.6
3,040,536	+				-1.2
3,040,540	+				-1.7
3,040,541	+				+0.9
3,040,546	+				-0.3
3,040,546	+				+0.6
3,040,548	+				+0.9
3,040,548	+				-0.3
3,040,548	+				+1.0
3,040,548	+				-1.1
3,040,548	-				-0.2
3,040,556	-				-2.1
3,040,558	+				+0.3
3,040,558	+				+0.2
3,040,558	+				-0.4
3,040,558	+				-0.7
3,040,571	+				+1.7
3,040,571	+				+1.7
3,040,576	+				-1.5
3,040,577	+				+1.0
3,040,577	+				+0.3
3,040,579	-				+0.3
3,040,599	-				-1.9
3,040,608	+				+0.0
3,040,608	-				-0.3
3,040,608	-				+0.7
3,040,616	+				-1.3
3,040,621	+				-0.2
3,040,621	+				-0.3
3,040,621	+				-0.1
3,040,623	+				-0.2
3,040,624	-				-1.7
3,040,629	+				+0.4
3,040,629	+				-2.0
3,040,629	+				-1.4
3,040,629	-				-2.6
3,040,629	-				-0.2
3,040,637	-		GFF2986	0.10	+0.1
3,040,669	+		GFF2986	0.11	+0.1
3,040,669	+		GFF2986	0.11	+0.7
3,040,670	+		GFF2986	0.11	-0.1
3,040,676	-		GFF2986	0.12	-0.4
3,040,676	-		GFF2986	0.12	+1.1
3,040,685	+		GFF2986	0.12	+0.0
3,040,692	-		GFF2986	0.12	+1.4
3,040,694	+		GFF2986	0.12	-0.3
3,040,697	+		GFF2986	0.12	-0.6
3,040,702	+		GFF2986	0.13	-1.4
3,040,704	+		GFF2986	0.13	-0.1
3,040,711	+		GFF2986	0.13	-0.2
3,040,712	-		GFF2986	0.13	+0.4
3,040,712	-		GFF2986	0.13	-0.4
3,040,717	-		GFF2986	0.13	-0.6
3,040,726	+		GFF2986	0.13	-0.8
3,040,735	-		GFF2986	0.14	-0.8
3,040,767	+		GFF2986	0.15	+0.6
3,040,810	-		GFF2986	0.17	-1.9
3,040,828	-		GFF2986	0.17	-1.3
3,040,837	-		GFF2986	0.18	-1.0
3,040,839	+		GFF2986	0.18	-1.5
3,040,839	-		GFF2986	0.18	+0.1
3,040,859	+		GFF2986	0.18	-0.9
3,040,895	+		GFF2986	0.20	-0.3
3,040,903	-		GFF2986	0.20	-0.4
3,040,903	-		GFF2986	0.20	+0.5
3,040,930	+		GFF2986	0.21	+0.7
3,040,930	+		GFF2986	0.21	-0.5
3,040,938	-		GFF2986	0.21	+1.3
3,040,945	+		GFF2986	0.22	+0.2
3,040,945	+		GFF2986	0.22	-1.6
3,040,945	+		GFF2986	0.22	-0.8
3,040,945	+		GFF2986	0.22	-0.3
3,040,945	+		GFF2986	0.22	-1.5
3,040,945	+		GFF2986	0.22	-1.1
3,040,945	+		GFF2986	0.22	+0.6
3,040,945	+		GFF2986	0.22	+1.6
3,040,945	+		GFF2986	0.22	-0.9
3,040,945	+		GFF2986	0.22	+1.0
3,040,945	+		GFF2986	0.22	+1.7
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