Strain Fitness in Sphingobium sp. HT1-2 around GFF2971

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,024,880	+		GFF2970	0.23	+0.9
3,024,880	+		GFF2970	0.23	-0.4
3,024,880	+		GFF2970	0.23	-0.1
3,024,880	-		GFF2970	0.23	-0.9
3,024,888	+		GFF2970	0.24	-0.7
3,024,888	+		GFF2970	0.24	-0.1
3,024,888	-		GFF2970	0.24	-0.3
3,024,888	-		GFF2970	0.24	+0.2
3,024,896	-		GFF2970	0.24	-0.4
3,024,898	-		GFF2970	0.25	-1.5
3,024,907	+		GFF2970	0.25	+0.2
3,024,907	+		GFF2970	0.25	-2.4
3,024,907	+		GFF2970	0.25	-0.4
3,024,910	-		GFF2970	0.25	+0.6
3,024,912	+		GFF2970	0.26	+0.4
3,024,912	+		GFF2970	0.26	+0.8
3,024,915	-		GFF2970	0.26	+0.1
3,024,920	-		GFF2970	0.26	-1.9
3,024,920	-		GFF2970	0.26	+0.9
3,024,929	-		GFF2970	0.27	+1.8
3,024,935	-		GFF2970	0.27	-1.0
3,024,948	-		GFF2970	0.28	-1.1
3,024,957	-		GFF2970	0.29	-0.5
3,024,982	+		GFF2970	0.31	-2.1
3,024,986	+		GFF2970	0.31	+0.5
3,024,986	+		GFF2970	0.31	-0.9
3,024,986	+		GFF2970	0.31	-0.4
3,024,986	+		GFF2970	0.31	+0.1
3,024,986	+		GFF2970	0.31	+1.2
3,024,987	+		GFF2970	0.31	-0.5
3,024,987	+		GFF2970	0.31	-1.4
3,024,994	-		GFF2970	0.32	+0.5
3,024,994	-		GFF2970	0.32	-0.7
3,024,994	-		GFF2970	0.32	-1.7
3,024,994	-		GFF2970	0.32	+0.3
3,025,027	-		GFF2970	0.34	-0.4
3,025,029	+		GFF2970	0.35	+0.0
3,025,029	+		GFF2970	0.35	-2.2
3,025,032	-		GFF2970	0.35	-0.3
3,025,047	-		GFF2970	0.36	-0.5
3,025,049	+		GFF2970	0.36	+0.5
3,025,049	+		GFF2970	0.36	-0.2
3,025,056	+		GFF2970	0.37	-0.8
3,025,056	+		GFF2970	0.37	-0.6
3,025,057	-		GFF2970	0.37	-0.5
3,025,057	-		GFF2970	0.37	+0.7
3,025,070	+		GFF2970	0.38	+0.6
3,025,070	+		GFF2970	0.38	+1.2
3,025,070	+		GFF2970	0.38	+0.0
3,025,070	+		GFF2970	0.38	+0.6
3,025,070	+		GFF2970	0.38	-2.0
3,025,074	-		GFF2970	0.38	-1.3
3,025,078	-		GFF2970	0.38	+0.2
3,025,078	-		GFF2970	0.38	-0.5
3,025,078	-		GFF2970	0.38	+0.3
3,025,078	-		GFF2970	0.38	+0.8
3,025,101	+		GFF2970	0.40	-1.1
3,025,104	-		GFF2970	0.40	+0.1
3,025,121	+		GFF2970	0.42	-0.2
3,025,122	-		GFF2970	0.42	-0.1
3,025,136	+		GFF2970	0.43	+0.7
3,025,155	+		GFF2970	0.44	-0.3
3,025,182	+		GFF2970	0.46	-1.4
3,025,182	+		GFF2970	0.46	-0.2
3,025,182	+		GFF2970	0.46	+0.5
3,025,182	+		GFF2970	0.46	-0.3
3,025,182	+		GFF2970	0.46	+0.7
3,025,182	+		GFF2970	0.46	+0.0
3,025,190	-		GFF2970	0.47	-0.1
3,025,190	-		GFF2970	0.47	+0.8
3,025,190	-		GFF2970	0.47	+0.2
3,025,197	+		GFF2970	0.48	-0.1
3,025,197	+		GFF2970	0.48	-0.8
3,025,204	-		GFF2970	0.48	-0.3
3,025,204	-		GFF2970	0.48	-3.4
3,025,205	-		GFF2970	0.48	-2.8
3,025,205	-		GFF2970	0.48	+1.5
3,025,206	+		GFF2970	0.48	-0.2
3,025,206	+		GFF2970	0.48	-0.0
3,025,206	+		GFF2970	0.48	-0.6
3,025,214	-		GFF2970	0.49	-0.8
3,025,228	+		GFF2970	0.50	-1.4
3,025,228	+		GFF2970	0.50	+1.3
3,025,236	-		GFF2970	0.51	-0.1
3,025,239	+		GFF2970	0.51	-0.7
3,025,242	-		GFF2970	0.51	-0.4
3,025,247	-		GFF2970	0.51	-1.3
3,025,247	-		GFF2970	0.51	-0.5
3,025,274	+		GFF2970	0.54	-0.5
3,025,274	+		GFF2970	0.54	-1.9
3,025,282	-		GFF2970	0.54	-1.5
3,025,282	-		GFF2970	0.54	+0.4
3,025,285	+		GFF2970	0.54	+0.7
3,025,288	-		GFF2970	0.55	-0.8
3,025,298	-		GFF2970	0.55	-0.6
3,025,300	+		GFF2970	0.56	+0.1
3,025,303	-		GFF2970	0.56	+0.5
3,025,303	-		GFF2970	0.56	+0.9
3,025,310	+		GFF2970	0.56	+0.3
3,025,310	+		GFF2970	0.56	+0.3
3,025,310	+		GFF2970	0.56	-0.5
3,025,310	+		GFF2970	0.56	-0.3
3,025,310	+		GFF2970	0.56	-1.3
3,025,310	+		GFF2970	0.56	-0.4
3,025,312	+		GFF2970	0.56	+0.5
3,025,313	-		GFF2970	0.57	-2.3
3,025,318	-		GFF2970	0.57	-0.8
3,025,318	-		GFF2970	0.57	-0.2
3,025,318	-		GFF2970	0.57	-0.9
3,025,318	-		GFF2970	0.57	-0.1
3,025,318	-		GFF2970	0.57	+0.4
3,025,318	-		GFF2970	0.57	-0.6
3,025,318	-		GFF2970	0.57	-0.1
3,025,319	+		GFF2970	0.57	+0.8
3,025,319	+		GFF2970	0.57	-1.2
3,025,319	+		GFF2970	0.57	+0.2
3,025,319	+		GFF2970	0.57	-2.1
3,025,327	-		GFF2970	0.58	-0.5
3,025,332	-		GFF2970	0.58	+0.6
3,025,336	+		GFF2970	0.58	+0.2
3,025,351	-		GFF2970	0.59	+0.3
3,025,351	-		GFF2970	0.59	+0.6
3,025,351	-		GFF2970	0.59	-0.8
3,025,359	-		GFF2970	0.60	-1.1
3,025,364	-		GFF2970	0.60	+1.7
3,025,366	+		GFF2970	0.61	-0.1
3,025,366	+		GFF2970	0.61	-0.2
3,025,366	+		GFF2970	0.61	+0.0
3,025,366	+		GFF2970	0.61	-0.7
3,025,374	-		GFF2970	0.61	+0.5
3,025,374	-		GFF2970	0.61	-1.1
3,025,374	-		GFF2970	0.61	-0.4
3,025,374	-		GFF2970	0.61	-0.3
3,025,374	-		GFF2970	0.61	+1.0
3,025,374	-		GFF2970	0.61	-1.4
3,025,374	-		GFF2970	0.61	-1.1
3,025,389	+		GFF2970	0.62	-1.3
3,025,389	+		GFF2970	0.62	-0.1
3,025,394	+		GFF2970	0.63	-1.1
3,025,397	-		GFF2970	0.63	-0.1
3,025,397	-		GFF2970	0.63	-0.9
3,025,397	-		GFF2970	0.63	+1.3
3,025,411	+		GFF2970	0.64	-1.6
3,025,411	-		GFF2970	0.64	+1.1
3,025,413	+		GFF2970	0.64	-1.2
3,025,421	-		GFF2970	0.65	-1.3
3,025,435	+		GFF2970	0.66	-0.5
3,025,435	+		GFF2970	0.66	+0.9
3,025,435	+		GFF2970	0.66	-0.3
3,025,438	-		GFF2970	0.66	-0.3
3,025,443	-		GFF2970	0.67	-0.7
3,025,444	+		GFF2970	0.67	-1.9
3,025,453	-		GFF2970	0.67	+0.3
3,025,454	-		GFF2970	0.67	-0.4
3,025,454	-		GFF2970	0.67	+2.6
3,025,495	+		GFF2970	0.71	-1.0
3,025,501	+		GFF2970	0.71	+0.5
3,025,503	-		GFF2970	0.71	+0.9
3,025,519	-		GFF2970	0.72	+0.0
3,025,538	+		GFF2970	0.74	-0.1
3,025,543	+		GFF2970	0.74	-1.6
3,025,546	-		GFF2970	0.75	-1.0
3,025,548	+		GFF2970	0.75	+1.3
3,025,548	+		GFF2970	0.75	-0.9
3,025,556	-		GFF2970	0.75	+0.6
3,025,556	-		GFF2970	0.75	+0.1
3,025,556	-		GFF2970	0.75	-0.1
3,025,556	-		GFF2970	0.75	+0.2
3,025,556	-		GFF2970	0.75	-0.1
3,025,556	-		GFF2970	0.75	+0.8
3,025,610	+		GFF2970	0.79	-2.5
3,025,610	+		GFF2970	0.79	-0.3
3,025,610	+		GFF2970	0.79	-1.8
3,025,618	-		GFF2970	0.80	-1.6
3,025,632	+		GFF2970	0.81	-0.7
3,025,632	+		GFF2970	0.81	-0.4
3,025,640	-		GFF2970	0.82	-0.5
3,025,640	-		GFF2970	0.82	+1.0
3,025,640	-		GFF2970	0.82	+0.7
3,025,647	+		GFF2970	0.82	-0.8
3,025,655	-		GFF2970	0.83	-1.7
3,025,663	-		GFF2970	0.84	-0.1
3,025,663	-		GFF2970	0.84	+0.8
3,025,663	-		GFF2970	0.84	+0.9
3,025,665	-		GFF2970	0.84	-1.0
3,025,684	+		GFF2970	0.85	-1.5
3,025,692	-		GFF2970	0.86	-0.7
3,025,703	+		GFF2970	0.87	-0.7
3,025,703	+		GFF2970	0.87	+0.4
3,025,703	+		GFF2970	0.87	-1.1
3,025,707	+		GFF2970	0.87	+0.7
3,025,707	+		GFF2970	0.87	-1.0
3,025,711	-		GFF2970	0.87	+0.5
3,025,715	-		GFF2970	0.88	+0.4
3,025,720	-		GFF2970	0.88	+0.5
3,025,740	+		GFF2970	0.90	-0.6
3,025,749	-				-1.6
3,025,749	-				+0.2
3,025,759	+				-0.3
3,025,767	-				-2.0
3,025,767	-				+0.4
3,025,767	-				+0.0
3,025,767	-				-0.8
3,025,768	+				+0.2
3,025,778	+				+0.5
3,025,779	+				+1.0
3,025,786	-				-0.3
3,025,786	-				-2.0
3,025,796	+				+0.1
3,025,805	+				+0.3
3,025,816	-				-1.0
3,025,827	-				-1.4
3,025,833	-				-2.4
3,025,833	-				-0.8
3,025,833	-				+0.9
3,025,838	+				-0.3
3,025,854	+				-1.6
3,025,860	+				+0.6
3,025,862	-				+0.3
3,025,862	-				+1.1
3,025,876	+				-0.5
3,025,885	+				-0.7
3,025,900	+				-1.1
3,025,908	-				+0.8
3,025,908	-				+0.9
3,025,921	+				+0.6
3,025,939	-				+0.9
3,025,941	+				-1.1
3,025,941	+				-0.4
3,025,949	-				-0.8
3,025,949	-				+0.9
3,025,949	-				-0.2
3,025,951	+		GFF2971	0.10	-1.0
3,025,956	+		GFF2971	0.11	-1.7
3,025,961	+		GFF2971	0.11	-1.3
3,025,969	-		GFF2971	0.12	-0.7
3,025,969	-		GFF2971	0.12	-1.2
3,026,028	+		GFF2971	0.20	-0.4
3,026,057	+		GFF2971	0.23	-1.1
3,026,076	+		GFF2971	0.26	-1.7
3,026,077	+		GFF2971	0.26	-0.7
3,026,077	+		GFF2971	0.26	-1.2
3,026,084	-		GFF2971	0.27	-0.3
3,026,085	-		GFF2971	0.27	-0.4
3,026,085	-		GFF2971	0.27	+0.1
3,026,085	-		GFF2971	0.27	-1.4
3,026,110	+		GFF2971	0.30	+0.6
3,026,110	+		GFF2971	0.30	-2.3
3,026,118	-		GFF2971	0.31	-0.6
3,026,118	-		GFF2971	0.31	-0.3
3,026,177	+		GFF2971	0.39	-0.2
3,026,200	-		GFF2971	0.42	+0.8
3,026,211	+		GFF2971	0.43	-1.1
3,026,211	+		GFF2971	0.43	+0.3
3,026,219	-		GFF2971	0.44	+0.6
3,026,236	+		GFF2971	0.46	+0.2
3,026,240	+		GFF2971	0.47	-0.5
3,026,240	-		GFF2971	0.47	+0.7
3,026,248	-		GFF2971	0.48	-0.8
3,026,248	-		GFF2971	0.48	-0.8
3,026,248	-		GFF2971	0.48	-1.1
3,026,254	-		GFF2971	0.48	+0.7
3,026,255	-		GFF2971	0.49	-0.2
3,026,255	-		GFF2971	0.49	-0.4
3,026,265	+		GFF2971	0.50	-0.6
3,026,273	-		GFF2971	0.51	-1.3
3,026,286	+		GFF2971	0.52	-0.0
3,026,286	+		GFF2971	0.52	-0.3
3,026,294	-		GFF2971	0.53	-0.9
3,026,305	+		GFF2971	0.55	-1.4
3,026,305	+		GFF2971	0.55	-0.9
3,026,305	+		GFF2971	0.55	+0.3
3,026,313	-		GFF2971	0.56	-1.4
3,026,315	-		GFF2971	0.56	+0.4
3,026,333	+		GFF2971	0.58	-2.0
3,026,341	-		GFF2971	0.59	-0.5
3,026,341	-		GFF2971	0.59	-0.1
3,026,341	-		GFF2971	0.59	-1.6
3,026,341	-		GFF2971	0.59	+0.1
3,026,344	+		GFF2971	0.60	+0.8
3,026,353	+		GFF2971	0.61	+1.3
3,026,354	+		GFF2971	0.61	+0.5
3,026,354	+		GFF2971	0.61	-2.3
3,026,361	-		GFF2971	0.62	+0.5
3,026,362	-		GFF2971	0.62	-1.5
3,026,362	-		GFF2971	0.62	-1.4
3,026,397	+		GFF2971	0.67	-0.6
3,026,405	-		GFF2971	0.68	-0.1
3,026,405	-		GFF2971	0.68	-0.1
3,026,405	-		GFF2971	0.68	-0.1
3,026,405	-		GFF2971	0.68	-0.6
3,026,454	-		GFF2971	0.74	+0.2
3,026,462	-		GFF2971	0.75	-0.7
3,026,467	-		GFF2971	0.75	+0.2
3,026,467	-		GFF2971	0.75	+0.8
3,026,503	+		GFF2971	0.80	+1.1
3,026,513	+		GFF2971	0.81	-0.4
3,026,513	+		GFF2971	0.81	+0.9
3,026,515	+		GFF2971	0.81	+0.4
3,026,518	+		GFF2971	0.82	+0.2
3,026,519	+		GFF2971	0.82	-1.2
3,026,523	+		GFF2971	0.83	+0.4
3,026,523	+		GFF2971	0.83	+0.8
3,026,523	+		GFF2971	0.83	+0.4
3,026,523	+		GFF2971	0.83	-0.7
3,026,526	-		GFF2971	0.83	-0.8
3,026,529	+		GFF2971	0.83	-0.8
3,026,529	+		GFF2971	0.83	-0.3
3,026,529	+		GFF2971	0.83	-1.5
3,026,529	+		GFF2971	0.83	+0.2
3,026,531	-		GFF2971	0.84	-0.6
3,026,531	-		GFF2971	0.84	-1.0
3,026,531	-		GFF2971	0.84	+0.3
3,026,537	-		GFF2971	0.84	+0.5
3,026,537	-		GFF2971	0.84	-0.8
3,026,537	-		GFF2971	0.84	-0.3
3,026,537	-		GFF2971	0.84	+0.5
3,026,537	-		GFF2971	0.84	-1.6
3,026,552	-		GFF2971	0.86	-0.8
3,026,558	+		GFF2971	0.87	+0.5
3,026,558	+		GFF2971	0.87	-1.4
3,026,558	-		GFF2971	0.87	-2.1
3,026,559	-		GFF2971	0.87	-0.3
3,026,563	+		GFF2971	0.88	+0.1
3,026,563	+		GFF2971	0.88	-1.1
3,026,563	+		GFF2971	0.88	-0.3
3,026,563	+		GFF2971	0.88	+0.4
3,026,563	+		GFF2971	0.88	-1.4
3,026,563	+		GFF2971	0.88	-1.4
3,026,563	+		GFF2971	0.88	-1.4
3,026,563	+		GFF2971	0.88	+0.1
3,026,563	+		GFF2971	0.88	+0.3
3,026,563	+		GFF2971	0.88	+0.4
3,026,563	+		GFF2971	0.88	-1.5
3,026,563	+		GFF2971	0.88	-0.2
3,026,563	+		GFF2971	0.88	-0.3
3,026,563	+		GFF2971	0.88	+0.0
3,026,563	+		GFF2971	0.88	+1.4
3,026,566	-		GFF2971	0.88	+0.3
3,026,571	-		GFF2971	0.89	-0.6
3,026,571	-		GFF2971	0.89	+0.6
3,026,571	-		GFF2971	0.89	-0.8
3,026,571	-		GFF2971	0.89	+0.5
3,026,571	-		GFF2971	0.89	-1.7
3,026,571	-		GFF2971	0.89	+0.1
3,026,571	-		GFF2971	0.89	+0.4
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3,026,571	-		GFF2971	0.89	-1.6
3,026,590	+				+0.4
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3,026,836	+		GFF2972	0.27	+0.5
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3,026,951	+				-0.2
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3,027,446	-		GFF2974	0.39	-1.3
3,027,450	-		GFF2974	0.39	-1.9