Strain Fitness in Sphingobium sp. HT1-2 around GFF2935

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,006,053	+				-1.2
3,006,054	+				+0.5
3,006,055	+				-0.2
3,006,055	+				+1.4
3,006,057	+				-0.4
3,006,063	-				-0.8
3,006,063	-				+0.3
3,006,063	-				+1.4
3,006,063	-				+0.3
3,006,070	+				-1.5
3,006,070	+				+0.1
3,006,122	+				+0.3
3,006,130	-				+0.7
3,006,135	-				+0.3
3,006,158	+				+0.3
3,006,165	-				-0.4
3,006,166	-				-0.3
3,006,166	-				+0.3
3,006,189	+				+0.1
3,006,197	-		GFF2933	0.11	-0.7
3,006,240	+		GFF2933	0.17	-0.3
3,006,253	-		GFF2933	0.19	-1.5
3,006,253	-		GFF2933	0.19	+0.1
3,006,262	+		GFF2933	0.20	+0.8
3,006,263	+		GFF2933	0.21	-1.4
3,006,263	+		GFF2933	0.21	+1.5
3,006,263	-		GFF2933	0.21	+0.2
3,006,270	-		GFF2933	0.22	-0.2
3,006,287	-		GFF2933	0.24	-1.7
3,006,288	+		GFF2933	0.24	-2.9
3,006,288	+		GFF2933	0.24	-1.4
3,006,290	+		GFF2933	0.25	-0.4
3,006,290	+		GFF2933	0.25	-1.6
3,006,290	+		GFF2933	0.25	-0.6
3,006,290	+		GFF2933	0.25	-0.0
3,006,290	+		GFF2933	0.25	-0.1
3,006,290	+		GFF2933	0.25	-1.1
3,006,290	+		GFF2933	0.25	+1.6
3,006,290	+		GFF2933	0.25	-0.0
3,006,290	+		GFF2933	0.25	-0.5
3,006,290	+		GFF2933	0.25	-1.0
3,006,296	-		GFF2933	0.25	-1.1
3,006,298	-		GFF2933	0.26	+0.3
3,006,298	-		GFF2933	0.26	-1.9
3,006,298	-		GFF2933	0.26	-2.5
3,006,298	-		GFF2933	0.26	-0.6
3,006,298	-		GFF2933	0.26	-0.3
3,006,298	-		GFF2933	0.26	+0.4
3,006,298	-		GFF2933	0.26	+0.6
3,006,312	+		GFF2933	0.28	-0.8
3,006,314	+		GFF2933	0.28	-2.0
3,006,319	-		GFF2933	0.29	+1.1
3,006,327	+		GFF2933	0.30	-0.6
3,006,327	+		GFF2933	0.30	+0.1
3,006,327	+		GFF2933	0.30	+0.1
3,006,335	-		GFF2933	0.31	-0.3
3,006,356	-		GFF2933	0.34	-1.1
3,006,383	+		GFF2933	0.38	+0.4
3,006,391	-		GFF2933	0.40	-0.1
3,006,394	-		GFF2933	0.40	-1.4
3,006,420	+		GFF2933	0.44	+0.7
3,006,425	-		GFF2933	0.45	+0.4
3,006,444	+		GFF2933	0.47	-0.4
3,006,489	-		GFF2933	0.54	-3.0
3,006,507	-		GFF2933	0.57	-0.8
3,006,531	-		GFF2933	0.60	-0.6
3,006,597	+		GFF2933	0.70	-1.5
3,006,602	+		GFF2933	0.71	-0.1
3,006,623	+		GFF2933	0.74	+1.4
3,006,666	-		GFF2933	0.80	-0.2
3,006,676	-		GFF2933	0.82	-1.5
3,006,677	+		GFF2933	0.82	-2.1
3,006,683	+		GFF2933	0.83	+1.4
3,006,683	+		GFF2933	0.83	-1.0
3,006,691	-		GFF2933	0.84	+0.2
3,006,691	-		GFF2933	0.84	-0.6
3,006,691	-		GFF2933	0.84	-0.5
3,006,717	+		GFF2933	0.88	-0.6
3,006,727	+		GFF2933	0.89	+0.4
3,006,735	-				-0.9
3,006,735	-				-1.0
3,006,735	-				-0.5
3,006,736	+				+0.8
3,006,736	+				-0.1
3,006,741	+				-1.8
3,006,742	+				+0.2
3,006,744	-				-0.3
3,006,752	+				-0.6
3,006,770	-				+0.8
3,006,771	+				+0.1
3,006,771	+				+0.3
3,006,779	+				-1.1
3,006,779	+				-0.8
3,006,779	+				-1.8
3,006,799	+				+0.6
3,006,805	+				+1.4
3,006,828	+				+1.6
3,006,828	+				-2.4
3,006,828	-				-0.3
3,006,833	+				-0.0
3,006,841	-		GFF2934	0.11	-0.9
3,006,862	+		GFF2934	0.20	+0.4
3,006,862	+		GFF2934	0.20	-1.1
3,006,862	+		GFF2934	0.20	-1.7
3,006,901	-		GFF2934	0.37	-1.5
3,006,903	+		GFF2934	0.38	+0.4
3,006,909	+		GFF2934	0.40	-0.5
3,006,911	+		GFF2934	0.41	+1.1
3,006,929	-		GFF2934	0.49	-0.3
3,006,974	+		GFF2934	0.68	-0.6
3,006,980	+		GFF2934	0.70	-0.3
3,006,982	-		GFF2934	0.71	-1.4
3,007,007	-		GFF2934	0.81	-0.4
3,007,030	-				-1.6
3,007,039	+				-0.5
3,007,045	+				+0.1
3,007,047	-				-1.4
3,007,052	+				-0.6
3,007,052	+				-0.4
3,007,055	+				-1.2
3,007,082	+				+0.8
3,007,082	+				+1.5
3,007,082	+				-0.0
3,007,090	-				+0.6
3,007,093	+				+0.5
3,007,101	-				-1.8
3,007,117	+				-0.3
3,007,162	+				-1.0
3,007,162	+				-0.2
3,007,178	+				+0.4
3,007,182	-				-2.1
3,007,231	+		GFF2935	0.12	+1.1
3,007,254	+		GFF2935	0.13	+0.6
3,007,254	+		GFF2935	0.13	-0.3
3,007,254	+		GFF2935	0.13	+1.3
3,007,262	-		GFF2935	0.14	-0.3
3,007,262	-		GFF2935	0.14	+0.2
3,007,262	-		GFF2935	0.14	+0.4
3,007,262	-		GFF2935	0.14	-0.3
3,007,271	+		GFF2935	0.14	-0.3
3,007,300	+		GFF2935	0.16	-1.0
3,007,300	+		GFF2935	0.16	-1.2
3,007,300	+		GFF2935	0.16	+0.2
3,007,300	+		GFF2935	0.16	-0.5
3,007,305	+		GFF2935	0.16	-0.4
3,007,308	-		GFF2935	0.16	-0.3
3,007,308	-		GFF2935	0.16	-0.2
3,007,308	-		GFF2935	0.16	+0.3
3,007,308	-		GFF2935	0.16	-0.5
3,007,308	-		GFF2935	0.16	-0.7
3,007,318	-		GFF2935	0.17	-0.9
3,007,352	+		GFF2935	0.19	+0.3
3,007,360	-		GFF2935	0.20	-2.2
3,007,371	+		GFF2935	0.21	+0.6
3,007,371	+		GFF2935	0.21	+0.4
3,007,379	-		GFF2935	0.21	-0.5
3,007,384	+		GFF2935	0.21	-0.7
3,007,384	+		GFF2935	0.21	+0.4
3,007,384	+		GFF2935	0.21	-0.5
3,007,384	+		GFF2935	0.21	-1.4
3,007,394	+		GFF2935	0.22	+0.7
3,007,400	+		GFF2935	0.22	+0.8
3,007,426	-		GFF2935	0.24	-2.7
3,007,436	-		GFF2935	0.25	-0.6
3,007,468	+		GFF2935	0.27	+0.2
3,007,517	+		GFF2935	0.30	-0.2
3,007,517	+		GFF2935	0.30	+1.0
3,007,522	+		GFF2935	0.30	+0.6
3,007,522	+		GFF2935	0.30	+0.5
3,007,522	+		GFF2935	0.30	-1.4
3,007,522	+		GFF2935	0.30	+0.8
3,007,527	+		GFF2935	0.31	-0.7
3,007,530	-		GFF2935	0.31	+0.8
3,007,530	-		GFF2935	0.31	-1.9
3,007,530	-		GFF2935	0.31	-2.6
3,007,572	+		GFF2935	0.33	+0.4
3,007,575	+		GFF2935	0.34	-1.6
3,007,598	-		GFF2935	0.35	+0.2
3,007,603	+		GFF2935	0.35	-0.1
3,007,611	-		GFF2935	0.36	-1.0
3,007,611	-		GFF2935	0.36	-0.0
3,007,613	+		GFF2935	0.36	+0.2
3,007,613	+		GFF2935	0.36	+1.6
3,007,616	-		GFF2935	0.36	+0.2
3,007,618	+		GFF2935	0.36	+0.8
3,007,640	+		GFF2935	0.38	-0.9
3,007,645	+		GFF2935	0.38	+0.9
3,007,645	+		GFF2935	0.38	-2.0
3,007,645	+		GFF2935	0.38	+0.4
3,007,653	+		GFF2935	0.39	-0.0
3,007,653	-		GFF2935	0.39	-1.8
3,007,655	+		GFF2935	0.39	-1.1
3,007,658	-		GFF2935	0.39	-1.8
3,007,658	-		GFF2935	0.39	+0.6
3,007,663	+		GFF2935	0.39	-1.0
3,007,663	-		GFF2935	0.39	+0.6
3,007,678	-		GFF2935	0.40	-1.2
3,007,678	-		GFF2935	0.40	-1.7
3,007,678	-		GFF2935	0.40	-1.3
3,007,694	+		GFF2935	0.41	-0.2
3,007,702	-		GFF2935	0.42	+1.2
3,007,702	-		GFF2935	0.42	-0.0
3,007,702	-		GFF2935	0.42	-0.5
3,007,717	+		GFF2935	0.43	-2.0
3,007,717	+		GFF2935	0.43	-0.2
3,007,717	+		GFF2935	0.43	-1.8
3,007,717	+		GFF2935	0.43	-0.8
3,007,717	+		GFF2935	0.43	-0.9
3,007,717	+		GFF2935	0.43	-0.3
3,007,725	-		GFF2935	0.43	-0.6
3,007,732	+		GFF2935	0.44	-0.8
3,007,736	-		GFF2935	0.44	+0.3
3,007,736	-		GFF2935	0.44	-0.6
3,007,751	+		GFF2935	0.45	-0.5
3,007,782	+		GFF2935	0.47	+0.4
3,007,790	+		GFF2935	0.47	+0.8
3,007,790	+		GFF2935	0.47	-0.0
3,007,790	+		GFF2935	0.47	+0.8
3,007,790	+		GFF2935	0.47	-0.8
3,007,790	+		GFF2935	0.47	+1.5
3,007,798	-		GFF2935	0.48	+1.6
3,007,798	-		GFF2935	0.48	-1.2
3,007,800	+		GFF2935	0.48	+0.1
3,007,808	-		GFF2935	0.49	-0.3
3,007,808	-		GFF2935	0.49	-1.5
3,007,808	-		GFF2935	0.49	-0.9
3,007,808	-		GFF2935	0.49	+0.1
3,007,833	+		GFF2935	0.50	-1.9
3,007,833	+		GFF2935	0.50	-0.3
3,007,841	-		GFF2935	0.51	-1.2
3,007,843	+		GFF2935	0.51	-0.7
3,007,843	+		GFF2935	0.51	-0.8
3,007,843	+		GFF2935	0.51	-0.5
3,007,843	+		GFF2935	0.51	+1.3
3,007,848	+		GFF2935	0.51	-2.4
3,007,848	+		GFF2935	0.51	+0.9
3,007,851	-		GFF2935	0.51	+1.1
3,007,851	-		GFF2935	0.51	+1.7
3,007,851	-		GFF2935	0.51	-1.2
3,007,851	-		GFF2935	0.51	+1.0
3,007,851	-		GFF2935	0.51	-0.7
3,007,851	-		GFF2935	0.51	+0.4
3,007,851	-		GFF2935	0.51	-1.9
3,007,851	-		GFF2935	0.51	-0.0
3,007,853	+		GFF2935	0.52	-0.9
3,007,856	-		GFF2935	0.52	-2.5
3,007,856	-		GFF2935	0.52	-0.2
3,007,870	+		GFF2935	0.53	-0.7
3,007,872	-		GFF2935	0.53	-0.9
3,007,889	+		GFF2935	0.54	+0.2
3,007,889	+		GFF2935	0.54	+0.8
3,007,889	+		GFF2935	0.54	-1.6
3,007,897	-		GFF2935	0.54	-0.5
3,007,897	-		GFF2935	0.54	-0.5
3,007,934	-		GFF2935	0.57	-2.1
3,007,971	-		GFF2935	0.59	+1.3
3,007,995	+		GFF2935	0.61	-2.3
3,008,005	+		GFF2935	0.61	-1.0
3,008,010	+		GFF2935	0.62	+1.1
3,008,012	-		GFF2935	0.62	-0.4
3,008,013	-		GFF2935	0.62	-0.9
3,008,086	+		GFF2935	0.67	+0.5
3,008,133	-		GFF2935	0.70	-1.9
3,008,151	+		GFF2935	0.71	+1.1
3,008,151	-		GFF2935	0.71	-0.9
3,008,155	+		GFF2935	0.71	+0.4
3,008,155	+		GFF2935	0.71	+0.1
3,008,155	+		GFF2935	0.71	+1.2
3,008,155	+		GFF2935	0.71	-1.9
3,008,155	+		GFF2935	0.71	+0.2
3,008,159	-		GFF2935	0.71	-1.0
3,008,163	-		GFF2935	0.71	-0.7
3,008,163	-		GFF2935	0.71	-1.7
3,008,163	-		GFF2935	0.71	+0.8
3,008,163	-		GFF2935	0.71	+0.6
3,008,163	-		GFF2935	0.71	+0.7
3,008,163	-		GFF2935	0.71	-1.3
3,008,179	+		GFF2935	0.73	-2.2
3,008,187	-		GFF2935	0.73	-1.5
3,008,194	+		GFF2935	0.73	-1.8
3,008,194	+		GFF2935	0.73	-0.0
3,008,194	+		GFF2935	0.73	-0.2
3,008,194	+		GFF2935	0.73	+0.3
3,008,194	+		GFF2935	0.73	+0.3
3,008,194	+		GFF2935	0.73	+0.6
3,008,202	-		GFF2935	0.74	+0.4
3,008,202	-		GFF2935	0.74	-0.4
3,008,202	-		GFF2935	0.74	+0.3
3,008,204	+		GFF2935	0.74	+1.2
3,008,204	+		GFF2935	0.74	+0.7
3,008,213	+		GFF2935	0.75	-0.2
3,008,214	+		GFF2935	0.75	-0.1
3,008,214	+		GFF2935	0.75	+0.8
3,008,238	+		GFF2935	0.76	-0.4
3,008,243	+		GFF2935	0.77	+0.1
3,008,243	+		GFF2935	0.77	+0.6
3,008,243	+		GFF2935	0.77	-1.4
3,008,246	-		GFF2935	0.77	-1.7
3,008,270	+		GFF2935	0.78	+0.8
3,008,270	+		GFF2935	0.78	-0.2
3,008,275	+		GFF2935	0.79	-0.4
3,008,275	+		GFF2935	0.79	+0.8
3,008,278	-		GFF2935	0.79	-0.2
3,008,278	-		GFF2935	0.79	+1.1
3,008,278	-		GFF2935	0.79	+0.8
3,008,278	-		GFF2935	0.79	+1.2
3,008,278	-		GFF2935	0.79	+0.2
3,008,278	-		GFF2935	0.79	-1.1
3,008,278	-		GFF2935	0.79	-2.4
3,008,280	+		GFF2935	0.79	+0.8
3,008,283	-		GFF2935	0.79	-0.4
3,008,283	-		GFF2935	0.79	+0.6
3,008,283	-		GFF2935	0.79	+0.8
3,008,283	-		GFF2935	0.79	-0.6
3,008,293	+		GFF2935	0.80	+0.2
3,008,293	+		GFF2935	0.80	-1.2
3,008,293	-		GFF2935	0.80	-0.1
3,008,299	+		GFF2935	0.80	-0.6
3,008,306	+		GFF2935	0.81	-1.9
3,008,307	-		GFF2935	0.81	-0.4
3,008,313	-		GFF2935	0.81	+0.1
3,008,314	-		GFF2935	0.81	-1.1
3,008,325	+		GFF2935	0.82	+0.6
3,008,344	-		GFF2935	0.83	-1.6
3,008,353	+		GFF2935	0.84	-0.3
3,008,355	+		GFF2935	0.84	+1.4
3,008,392	+		GFF2935	0.86	+1.7
3,008,392	+		GFF2935	0.86	+0.3
3,008,392	+		GFF2935	0.86	+0.3
3,008,392	+		GFF2935	0.86	+0.6
3,008,392	+		GFF2935	0.86	+0.7
3,008,400	-		GFF2935	0.87	-0.6
3,008,400	-		GFF2935	0.87	+0.4
3,008,429	+		GFF2935	0.89	+0.2
3,008,461	-				+0.5
3,008,476	-				-0.6
3,008,477	-				-0.1
3,008,485	+				-0.4
3,008,490	+				+0.1
3,008,490	+				-0.3
3,008,491	-				-0.6
3,008,500	+				-0.2
3,008,510	+				-1.6
3,008,529	+				-2.7
3,008,556	+				+0.8
3,008,563	-				-1.4
3,008,590	-				-1.8
3,008,590	-				-0.4
3,008,590	-				-0.5
3,008,590	-				+0.2
3,008,590	-				-0.4
3,008,598	-				+0.5
3,008,603	+				-0.3
3,008,603	+				-0.5
3,008,603	+				-2.4
3,008,603	+				-0.2
3,008,603	+				-0.1
3,008,603	+				-1.8
3,008,605	+				-1.8
3,008,611	-				-0.4
3,008,611	-				+1.1
3,008,611	-				+0.1
3,008,613	+				-2.2
3,008,618	+				-0.1
3,008,618	+				-0.2
3,008,671	-		GFF2936	0.19	-1.4
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3,008,941	-				+0.7
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3,008,952	+				+0.0
3,008,952	+				-1.2
3,008,952	+				-0.2
3,008,952	+				-0.3
3,008,952	+				+1.3
3,008,952	+				+0.1
3,008,952	+				-0.6
3,008,960	-				-1.7
3,008,960	-				+0.8
3,008,960	-				-0.1
3,008,960	-				-1.4
3,008,960	-				-0.2
3,008,960	-				-0.2
3,008,963	+				-0.8
3,008,965	-				-0.4
3,008,974	+				+1.0
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3,008,982	+				-0.5
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3,009,575	-				+0.8
3,009,576	+				-0.2
3,009,576	+				-0.3
3,009,593	+				+1.3