Strain Fitness in Sphingobium sp. HT1-2 around GFF2930

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,002,160	+		GFF2929	0.18	-0.9
3,002,160	+		GFF2929	0.18	-1.0
3,002,160	+		GFF2929	0.18	-2.0
3,002,160	+		GFF2929	0.18	-1.2
3,002,160	+		GFF2929	0.18	-1.5
3,002,165	+		GFF2929	0.18	-0.7
3,002,165	+		GFF2929	0.18	-0.8
3,002,168	-		GFF2929	0.19	-1.3
3,002,168	-		GFF2929	0.19	-2.1
3,002,168	-		GFF2929	0.19	+0.2
3,002,168	-		GFF2929	0.19	-0.2
3,002,168	-		GFF2929	0.19	-0.9
3,002,168	-		GFF2929	0.19	-1.8
3,002,168	-		GFF2929	0.19	-0.1
3,002,168	-		GFF2929	0.19	+1.2
3,002,168	-		GFF2929	0.19	-0.7
3,002,168	-		GFF2929	0.19	+0.7
3,002,168	-		GFF2929	0.19	-1.2
3,002,170	+		GFF2929	0.19	-1.0
3,002,173	-		GFF2929	0.19	+0.1
3,002,183	+		GFF2929	0.20	-0.7
3,002,190	+		GFF2929	0.21	+0.3
3,002,231	+		GFF2929	0.26	+1.6
3,002,231	+		GFF2929	0.26	-0.6
3,002,231	+		GFF2929	0.26	-0.3
3,002,231	+		GFF2929	0.26	+0.9
3,002,231	+		GFF2929	0.26	-0.1
3,002,231	+		GFF2929	0.26	+0.5
3,002,231	+		GFF2929	0.26	-1.2
3,002,231	+		GFF2929	0.26	-0.7
3,002,231	+		GFF2929	0.26	+0.8
3,002,231	+		GFF2929	0.26	-0.5
3,002,236	+		GFF2929	0.26	-1.6
3,002,239	-		GFF2929	0.26	+0.2
3,002,239	-		GFF2929	0.26	-2.1
3,002,239	-		GFF2929	0.26	-0.0
3,002,239	-		GFF2929	0.26	-1.4
3,002,240	+		GFF2929	0.27	+0.5
3,002,240	+		GFF2929	0.27	-0.4
3,002,240	+		GFF2929	0.27	+0.3
3,002,248	-		GFF2929	0.27	+1.9
3,002,263	+		GFF2929	0.29	-0.0
3,002,268	+		GFF2929	0.30	+0.4
3,002,271	-		GFF2929	0.30	-0.9
3,002,276	-		GFF2929	0.30	+0.2
3,002,298	-		GFF2929	0.33	-1.6
3,002,299	+		GFF2929	0.33	-0.2
3,002,299	+		GFF2929	0.33	+0.1
3,002,331	+		GFF2929	0.37	-1.6
3,002,331	+		GFF2929	0.37	-0.3
3,002,331	+		GFF2929	0.37	-1.5
3,002,339	-		GFF2929	0.37	-2.3
3,002,339	-		GFF2929	0.37	-1.8
3,002,339	-		GFF2929	0.37	-0.3
3,002,346	+		GFF2929	0.38	-1.8
3,002,354	-		GFF2929	0.39	+0.3
3,002,354	-		GFF2929	0.39	-0.4
3,002,370	+		GFF2929	0.41	-0.6
3,002,400	+		GFF2929	0.44	-1.3
3,002,400	+		GFF2929	0.44	-0.0
3,002,416	-		GFF2929	0.46	+0.4
3,002,426	+		GFF2929	0.47	+0.4
3,002,434	+		GFF2929	0.48	+0.1
3,002,442	-		GFF2929	0.49	+0.4
3,002,454	+		GFF2929	0.50	+0.1
3,002,454	+		GFF2929	0.50	-1.5
3,002,466	+		GFF2929	0.51	-0.7
3,002,471	+		GFF2929	0.52	-1.6
3,002,472	+		GFF2929	0.52	-0.3
3,002,481	+		GFF2929	0.53	+0.6
3,002,481	+		GFF2929	0.53	-0.8
3,002,481	+		GFF2929	0.53	-2.4
3,002,481	+		GFF2929	0.53	+0.1
3,002,481	+		GFF2929	0.53	+0.1
3,002,482	-		GFF2929	0.53	+0.0
3,002,491	+		GFF2929	0.54	+0.2
3,002,491	-		GFF2929	0.54	+0.8
3,002,516	+		GFF2929	0.57	-1.1
3,002,629	+		GFF2929	0.69	+0.8
3,002,632	+		GFF2929	0.69	+1.4
3,002,639	+		GFF2929	0.70	-1.6
3,002,639	+		GFF2929	0.70	-1.8
3,002,639	+		GFF2929	0.70	-1.7
3,002,639	+		GFF2929	0.70	-0.6
3,002,647	-		GFF2929	0.71	-0.6
3,002,647	-		GFF2929	0.71	-0.6
3,002,658	-		GFF2929	0.72	-2.1
3,002,672	-		GFF2929	0.74	+0.0
3,002,682	-		GFF2929	0.75	+0.6
3,002,682	-		GFF2929	0.75	+0.4
3,002,731	-		GFF2929	0.80	-0.2
3,002,731	-		GFF2929	0.80	+1.4
3,002,733	+		GFF2929	0.80	+0.8
3,002,748	-		GFF2929	0.82	+0.1
3,002,771	+		GFF2929	0.85	+0.4
3,002,784	-		GFF2929	0.86	-1.1
3,002,813	-		GFF2929	0.89	+0.7
3,002,831	-				+0.9
3,002,877	-				-0.9
3,002,887	-				-0.2
3,002,900	-				-1.6
3,002,920	+				-1.9
3,002,992	-				+1.1
3,002,992	-				+1.0
3,002,995	-				-0.1
3,003,028	+				+0.9
3,003,028	+				+0.5
3,003,028	+				+0.9
3,003,028	+				-2.2
3,003,028	+				-0.4
3,003,028	+				+0.9
3,003,028	+				-1.5
3,003,028	+				+0.1
3,003,028	+				-0.3
3,003,036	-				-0.3
3,003,036	-				-0.7
3,003,036	-				-0.5
3,003,036	-				-0.0
3,003,036	-				+1.1
3,003,036	-				-0.3
3,003,036	-				+1.4
3,003,036	-				-0.3
3,003,069	+				-1.8
3,003,077	-				-0.6
3,003,117	-				+0.4
3,003,165	-				-0.6
3,003,172	+				-1.8
3,003,172	+				-0.6
3,003,172	+				-0.6
3,003,172	+				+0.3
3,003,182	+				-1.9
3,003,182	+				+0.5
3,003,190	-				+0.2
3,003,190	-				+0.1
3,003,190	-				+0.2
3,003,190	-				-0.2
3,003,190	-				-0.9
3,003,238	+				-0.6
3,003,243	+				-0.7
3,003,251	-		GFF2930	0.10	-0.5
3,003,251	-		GFF2930	0.10	+0.6
3,003,256	-		GFF2930	0.11	+0.1
3,003,256	-		GFF2930	0.11	-1.1
3,003,256	-		GFF2930	0.11	-1.4
3,003,256	-		GFF2930	0.11	-0.9
3,003,283	+		GFF2930	0.14	+0.6
3,003,283	+		GFF2930	0.14	-2.0
3,003,283	-		GFF2930	0.14	-2.0
3,003,291	-		GFF2930	0.15	-0.6
3,003,325	+		GFF2930	0.19	+0.2
3,003,325	+		GFF2930	0.19	-0.5
3,003,333	-		GFF2930	0.20	-0.3
3,003,333	-		GFF2930	0.20	-1.1
3,003,363	-		GFF2930	0.23	-0.4
3,003,364	-		GFF2930	0.23	+0.6
3,003,389	-		GFF2930	0.26	-1.1
3,003,428	+		GFF2930	0.30	-0.7
3,003,428	+		GFF2930	0.30	+1.4
3,003,428	+		GFF2930	0.30	+0.2
3,003,428	+		GFF2930	0.30	-0.7
3,003,428	+		GFF2930	0.30	-0.6
3,003,428	+		GFF2930	0.30	+0.4
3,003,428	+		GFF2930	0.30	-0.9
3,003,428	+		GFF2930	0.30	+0.2
3,003,433	+		GFF2930	0.31	-0.7
3,003,436	-		GFF2930	0.31	-2.0
3,003,436	-		GFF2930	0.31	+1.9
3,003,436	-		GFF2930	0.31	-0.6
3,003,436	-		GFF2930	0.31	+1.8
3,003,436	-		GFF2930	0.31	-0.7
3,003,436	-		GFF2930	0.31	-1.9
3,003,436	-		GFF2930	0.31	-1.3
3,003,441	-		GFF2930	0.32	-0.4
3,003,459	+		GFF2930	0.34	+0.4
3,003,460	+		GFF2930	0.34	+0.5
3,003,460	+		GFF2930	0.34	+0.4
3,003,460	+		GFF2930	0.34	+0.9
3,003,468	-		GFF2930	0.35	-0.1
3,003,486	+		GFF2930	0.37	+0.2
3,003,486	+		GFF2930	0.37	-0.2
3,003,502	+		GFF2930	0.38	-0.8
3,003,517	+		GFF2930	0.40	-1.8
3,003,517	+		GFF2930	0.40	-0.4
3,003,523	+		GFF2930	0.41	+0.2
3,003,525	-		GFF2930	0.41	-2.2
3,003,542	+		GFF2930	0.43	-1.0
3,003,550	-		GFF2930	0.44	+0.7
3,003,550	-		GFF2930	0.44	-1.0
3,003,552	+		GFF2930	0.44	+0.5
3,003,552	+		GFF2930	0.44	-1.6
3,003,560	-		GFF2930	0.45	+0.4
3,003,560	-		GFF2930	0.45	-0.0
3,003,577	+		GFF2930	0.47	-0.4
3,003,585	-		GFF2930	0.48	-1.2
3,003,600	+		GFF2930	0.49	+1.0
3,003,605	+		GFF2930	0.50	-0.1
3,003,605	+		GFF2930	0.50	-1.8
3,003,608	-		GFF2930	0.50	-0.8
3,003,642	-		GFF2930	0.54	+0.2
3,003,643	+		GFF2930	0.54	+0.8
3,003,644	+		GFF2930	0.54	-0.8
3,003,646	+		GFF2930	0.55	-0.4
3,003,646	+		GFF2930	0.55	+0.6
3,003,651	+		GFF2930	0.55	+0.1
3,003,651	+		GFF2930	0.55	+0.5
3,003,652	-		GFF2930	0.55	-0.2
3,003,654	-		GFF2930	0.56	+0.2
3,003,654	-		GFF2930	0.56	-0.7
3,003,659	-		GFF2930	0.56	+0.4
3,003,659	-		GFF2930	0.56	-1.6
3,003,659	-		GFF2930	0.56	+0.1
3,003,659	-		GFF2930	0.56	-1.5
3,003,682	-		GFF2930	0.59	-0.2
3,003,705	-		GFF2930	0.61	-1.4
3,003,710	+		GFF2930	0.62	-0.3
3,003,726	+		GFF2930	0.64	+0.4
3,003,736	+		GFF2930	0.65	+0.2
3,003,742	+		GFF2930	0.65	+0.0
3,003,742	+		GFF2930	0.65	+1.5
3,003,742	+		GFF2930	0.65	-0.8
3,003,742	+		GFF2930	0.65	+0.5
3,003,750	-		GFF2930	0.66	-0.1
3,003,750	-		GFF2930	0.66	-1.0
3,003,750	-		GFF2930	0.66	-0.0
3,003,750	-		GFF2930	0.66	-0.8
3,003,752	+		GFF2930	0.67	-0.7
3,003,757	+		GFF2930	0.67	-1.0
3,003,757	+		GFF2930	0.67	-0.6
3,003,757	+		GFF2930	0.67	-0.5
3,003,757	+		GFF2930	0.67	+0.9
3,003,757	+		GFF2930	0.67	-1.3
3,003,757	+		GFF2930	0.67	-1.3
3,003,758	+		GFF2930	0.67	+0.5
3,003,765	-		GFF2930	0.68	+0.3
3,003,765	-		GFF2930	0.68	+0.3
3,003,765	-		GFF2930	0.68	-0.4
3,003,766	-		GFF2930	0.68	+0.9
3,003,770	-		GFF2930	0.69	-1.2
3,003,777	-		GFF2930	0.69	+0.6
3,003,787	+		GFF2930	0.70	-2.0
3,003,787	+		GFF2930	0.70	-0.5
3,003,787	+		GFF2930	0.70	-0.2
3,003,787	+		GFF2930	0.70	-1.4
3,003,794	-		GFF2930	0.71	-1.0
3,003,795	-		GFF2930	0.71	+0.2
3,003,801	-		GFF2930	0.72	-0.6
3,003,801	-		GFF2930	0.72	-1.3
3,003,815	+		GFF2930	0.74	-1.5
3,003,815	+		GFF2930	0.74	-0.5
3,003,820	+		GFF2930	0.74	-0.7
3,003,825	+		GFF2930	0.75	+0.8
3,003,828	-		GFF2930	0.75	+1.7
3,003,828	-		GFF2930	0.75	-0.2
3,003,830	+		GFF2930	0.75	+1.0
3,003,843	-		GFF2930	0.77	-0.2
3,003,849	-		GFF2930	0.77	+0.7
3,003,851	-		GFF2930	0.78	-0.4
3,003,851	-		GFF2930	0.78	-0.3
3,003,858	-		GFF2930	0.78	-1.3
3,003,915	-		GFF2930	0.85	-1.6
3,003,923	+		GFF2930	0.86	-0.6
3,003,923	+		GFF2930	0.86	+0.3
3,003,931	-		GFF2930	0.87	+0.8
3,003,931	-		GFF2930	0.87	-1.8
3,003,931	-		GFF2930	0.87	-0.5
3,003,931	-		GFF2930	0.87	+0.4
3,003,931	-		GFF2930	0.87	-0.8
3,003,931	-		GFF2930	0.87	-2.6
3,003,941	+		GFF2930	0.88	+0.9
3,003,946	+		GFF2930	0.88	-1.0
3,003,962	-				+0.4
3,003,974	-				-1.9
3,004,003	-				-0.6
3,004,003	-				+0.3
3,004,007	+				-0.4
3,004,024	+				+0.9
3,004,027	-				-0.5
3,004,032	-				-0.4
3,004,032	-				-0.1
3,004,057	-				-0.7
3,004,075	+				+0.1
3,004,083	+		GFF2931	0.10	-0.4
3,004,091	-		GFF2931	0.12	-1.4
3,004,096	+		GFF2931	0.14	-1.7
3,004,105	+		GFF2931	0.16	+0.1
3,004,119	+		GFF2931	0.20	-0.8
3,004,124	+		GFF2931	0.22	-1.2
3,004,137	-		GFF2931	0.25	-0.1
3,004,139	+		GFF2931	0.26	+0.2
3,004,162	+		GFF2931	0.32	+0.4
3,004,162	+		GFF2931	0.32	+0.4
3,004,170	-		GFF2931	0.34	-0.6
3,004,170	-		GFF2931	0.34	+0.9
3,004,172	+		GFF2931	0.35	+0.7
3,004,172	+		GFF2931	0.35	-0.3
3,004,187	+		GFF2931	0.39	-1.3
3,004,195	-		GFF2931	0.41	+0.9
3,004,207	+		GFF2931	0.45	-0.7
3,004,215	-		GFF2931	0.47	-0.4
3,004,215	-		GFF2931	0.47	-1.1
3,004,215	-		GFF2931	0.47	+0.7
3,004,293	+		GFF2931	0.69	-0.7
3,004,297	-		GFF2931	0.70	+1.1
3,004,301	-		GFF2931	0.71	-1.2
3,004,303	+		GFF2931	0.71	-0.7
3,004,316	+		GFF2931	0.75	+0.2
3,004,338	+		GFF2931	0.81	+1.1
3,004,349	+		GFF2931	0.84	+0.4
3,004,349	+		GFF2931	0.84	-0.8
3,004,349	+		GFF2931	0.84	-1.9
3,004,349	+		GFF2931	0.84	-1.2
3,004,349	+		GFF2931	0.84	+0.4
3,004,359	+		GFF2931	0.87	-0.3
3,004,359	+		GFF2931	0.87	+0.0
3,004,361	+		GFF2931	0.88	-0.9
3,004,366	+		GFF2931	0.89	-1.4
3,004,366	+		GFF2931	0.89	-1.2
3,004,366	+		GFF2931	0.89	-1.3
3,004,366	+		GFF2931	0.89	-0.3
3,004,366	+		GFF2931	0.89	+1.3
3,004,367	-		GFF2931	0.89	+0.1
3,004,374	-				+0.6
3,004,385	-				-0.1
3,004,402	+				-0.2
3,004,402	+				-0.8
3,004,407	+				-0.6
3,004,410	-				+1.7
3,004,465	+				-0.9
3,004,465	+				-1.2
3,004,478	-				-0.4
3,004,478	-				+1.0
3,004,480	+				-0.3
3,004,480	+				-0.0
3,004,480	+				-1.7
3,004,480	+				-0.4
3,004,488	-				-0.5
3,004,519	-				+0.6
3,004,520	+				+0.2
3,004,521	-				-0.2
3,004,546	+				-1.3
3,004,552	+				-2.2
3,004,552	+				-0.5
3,004,552	+				-0.0
3,004,552	+				+0.3
3,004,552	+				-1.7
3,004,552	+				-0.9
3,004,560	-				+0.8
3,004,560	-				-0.5
3,004,560	-				-1.0
3,004,560	-				-0.4
3,004,560	-				-0.5
3,004,560	-				-0.5
3,004,572	+		GFF2932	0.11	-1.4
3,004,572	+		GFF2932	0.11	+1.1
3,004,572	+		GFF2932	0.11	+1.0
3,004,572	+		GFF2932	0.11	+0.1
3,004,572	+		GFF2932	0.11	-1.2
3,004,575	-		GFF2932	0.11	+0.2
3,004,580	-		GFF2932	0.11	+0.2
3,004,580	-		GFF2932	0.11	+0.4
3,004,580	-		GFF2932	0.11	-1.4
3,004,588	+		GFF2932	0.12	+0.9
3,004,612	+		GFF2932	0.13	-2.0
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