Strain Fitness in Sphingobium sp. HT1-2 around GFF2905

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,965,923	+		GFF2904	0.23	+1.6
2,965,923	+		GFF2904	0.23	+0.2
2,965,923	+		GFF2904	0.23	-0.3
2,965,923	+		GFF2904	0.23	-2.0
2,965,931	-		GFF2904	0.24	-1.3
2,965,931	-		GFF2904	0.24	-1.7
2,965,941	+		GFF2904	0.25	-0.4
2,965,947	+		GFF2904	0.25	-1.3
2,965,955	-		GFF2904	0.26	-1.5
2,965,959	-		GFF2904	0.26	-0.8
2,965,959	-		GFF2904	0.26	-0.4
2,966,018	+		GFF2904	0.30	+0.1
2,966,019	+		GFF2904	0.31	+0.0
2,966,027	-		GFF2904	0.31	+1.0
2,966,041	+		GFF2904	0.32	+0.3
2,966,041	+		GFF2904	0.32	+1.6
2,966,049	-		GFF2904	0.33	-0.5
2,966,049	-		GFF2904	0.33	-0.2
2,966,049	-		GFF2904	0.33	+0.7
2,966,081	+		GFF2904	0.35	+0.7
2,966,081	+		GFF2904	0.35	-1.0
2,966,081	+		GFF2904	0.35	-1.0
2,966,081	+		GFF2904	0.35	-0.2
2,966,081	+		GFF2904	0.35	+2.0
2,966,081	+		GFF2904	0.35	+0.2
2,966,089	-		GFF2904	0.36	-1.6
2,966,104	+		GFF2904	0.37	-1.2
2,966,112	-		GFF2904	0.38	-0.9
2,966,134	+		GFF2904	0.39	-2.0
2,966,142	-		GFF2904	0.40	-0.3
2,966,142	-		GFF2904	0.40	-0.4
2,966,144	+		GFF2904	0.40	-2.5
2,966,145	+		GFF2904	0.40	+0.2
2,966,145	+		GFF2904	0.40	-1.0
2,966,145	+		GFF2904	0.40	+0.3
2,966,153	-		GFF2904	0.41	-0.2
2,966,153	-		GFF2904	0.41	+0.8
2,966,161	+		GFF2904	0.41	-1.5
2,966,161	+		GFF2904	0.41	+0.8
2,966,161	+		GFF2904	0.41	+0.8
2,966,169	-		GFF2904	0.42	-0.7
2,966,169	-		GFF2904	0.42	-0.6
2,966,171	+		GFF2904	0.42	-1.3
2,966,178	+		GFF2904	0.43	-1.7
2,966,186	-		GFF2904	0.43	+0.4
2,966,186	-		GFF2904	0.43	-1.7
2,966,188	+		GFF2904	0.44	+0.7
2,966,188	+		GFF2904	0.44	+0.6
2,966,188	+		GFF2904	0.44	+0.4
2,966,191	-		GFF2904	0.44	-0.9
2,966,191	-		GFF2904	0.44	-0.3
2,966,218	+		GFF2904	0.46	+0.0
2,966,271	+		GFF2904	0.50	+0.0
2,966,278	+		GFF2904	0.50	-1.4
2,966,286	+		GFF2904	0.51	-0.6
2,966,288	+		GFF2904	0.51	+0.2
2,966,288	+		GFF2904	0.51	-0.2
2,966,296	-		GFF2904	0.52	+0.5
2,966,296	-		GFF2904	0.52	+0.6
2,966,323	+		GFF2904	0.54	+1.0
2,966,323	+		GFF2904	0.54	-0.8
2,966,323	+		GFF2904	0.54	+0.5
2,966,323	+		GFF2904	0.54	+1.2
2,966,323	+		GFF2904	0.54	-0.2
2,966,323	+		GFF2904	0.54	+0.3
2,966,323	+		GFF2904	0.54	-2.0
2,966,323	+		GFF2904	0.54	+0.5
2,966,323	+		GFF2904	0.54	-0.2
2,966,331	-		GFF2904	0.54	+0.7
2,966,331	-		GFF2904	0.54	-0.7
2,966,331	-		GFF2904	0.54	-1.4
2,966,331	-		GFF2904	0.54	-2.7
2,966,333	+		GFF2904	0.55	-1.0
2,966,333	+		GFF2904	0.55	+0.7
2,966,335	-		GFF2904	0.55	-0.9
2,966,335	-		GFF2904	0.55	-1.2
2,966,340	+		GFF2904	0.55	+0.2
2,966,341	-		GFF2904	0.55	+1.0
2,966,346	-		GFF2904	0.56	-0.8
2,966,353	+		GFF2904	0.56	+0.2
2,966,361	-		GFF2904	0.57	+1.3
2,966,361	-		GFF2904	0.57	-1.5
2,966,379	+		GFF2904	0.58	+0.2
2,966,390	+		GFF2904	0.59	-1.4
2,966,391	+		GFF2904	0.59	+0.6
2,966,438	+		GFF2904	0.63	-0.5
2,966,446	-		GFF2904	0.63	+0.2
2,966,468	-		GFF2904	0.65	-1.2
2,966,470	+		GFF2904	0.65	+0.1
2,966,470	+		GFF2904	0.65	-0.0
2,966,470	-		GFF2904	0.65	-0.2
2,966,515	+		GFF2904	0.69	-1.2
2,966,532	-		GFF2904	0.70	+0.1
2,966,542	-		GFF2904	0.71	-1.8
2,966,542	-		GFF2904	0.71	-1.2
2,966,578	+		GFF2904	0.73	-0.4
2,966,591	+		GFF2904	0.74	-0.0
2,966,615	+		GFF2904	0.76	+0.2
2,966,618	-		GFF2904	0.76	-0.7
2,966,621	+		GFF2904	0.77	-0.4
2,966,671	+		GFF2904	0.81	-1.5
2,966,671	+		GFF2904	0.81	-1.6
2,966,679	-		GFF2904	0.81	+0.8
2,966,691	+		GFF2904	0.82	+0.5
2,966,692	-		GFF2904	0.82	-0.3
2,966,695	+		GFF2904	0.82	+0.4
2,966,695	+		GFF2904	0.82	+0.1
2,966,695	+		GFF2904	0.82	-1.1
2,966,695	+		GFF2904	0.82	-0.5
2,966,703	-		GFF2904	0.83	-2.1
2,966,709	+		GFF2904	0.83	-0.7
2,966,709	+		GFF2904	0.83	-0.2
2,966,728	+		GFF2904	0.85	-0.3
2,966,728	+		GFF2904	0.85	-2.0
2,966,736	-		GFF2904	0.86	+0.8
2,966,746	-		GFF2904	0.86	+1.1
2,966,751	-		GFF2904	0.87	+0.9
2,966,758	+		GFF2904	0.87	+1.1
2,966,771	+		GFF2904	0.88	+0.1
2,966,779	-		GFF2904	0.89	-0.1
2,966,779	-		GFF2904	0.89	-1.8
2,966,779	-		GFF2904	0.89	-1.5
2,966,779	-		GFF2904	0.89	-0.7
2,966,785	-		GFF2904	0.89	-0.7
2,966,792	+		GFF2904	0.90	+0.8
2,966,800	-				-2.2
2,966,800	-				+1.2
2,966,800	-				-0.7
2,966,805	-				-0.2
2,966,835	+				-0.4
2,966,843	-				-2.4
2,966,845	+				-0.7
2,966,845	+				-1.8
2,966,853	-				+0.1
2,966,853	-				-3.2
2,966,869	+				-0.8
2,966,869	+				+0.4
2,966,869	+				-1.2
2,966,869	+				+1.1
2,966,869	+				-0.1
2,966,869	+				+0.6
2,966,877	-				+0.8
2,966,877	-				-0.4
2,966,877	-				-2.6
2,966,884	+				-0.4
2,966,884	+				+0.4
2,966,892	-				-0.5
2,966,892	-				+0.8
2,966,892	-				-2.4
2,966,892	-				-1.1
2,966,892	-				+1.1
2,966,894	+				+0.4
2,966,902	+				-1.8
2,966,936	+				+0.9
2,966,950	+				-0.9
2,966,950	+				-0.6
2,966,960	+				+0.1
2,966,965	+				+0.3
2,966,966	-				-1.5
2,966,983	+				-1.0
2,966,983	+				-0.7
2,966,991	-				+0.9
2,966,999	-				-0.7
2,967,007	-				-0.6
2,967,009	+				-1.8
2,967,009	+				-0.6
2,967,009	+				-0.3
2,967,025	-		GFF2905	0.11	-0.3
2,967,027	-		GFF2905	0.12	+0.5
2,967,038	+		GFF2905	0.13	+0.3
2,967,046	-		GFF2905	0.14	+0.2
2,967,048	+		GFF2905	0.14	+0.4
2,967,051	-		GFF2905	0.14	-0.4
2,967,090	+		GFF2905	0.18	+0.8
2,967,098	-		GFF2905	0.19	-0.8
2,967,098	-		GFF2905	0.19	-1.4
2,967,136	-		GFF2905	0.23	-0.4
2,967,136	-		GFF2905	0.23	-1.1
2,967,138	+		GFF2905	0.24	-0.1
2,967,140	-		GFF2905	0.24	-0.8
2,967,143	+		GFF2905	0.24	-0.5
2,967,143	+		GFF2905	0.24	+1.2
2,967,146	-		GFF2905	0.25	-0.9
2,967,146	-		GFF2905	0.25	-0.4
2,967,148	+		GFF2905	0.25	+0.8
2,967,151	-		GFF2905	0.25	-0.5
2,967,156	-		GFF2905	0.26	+0.5
2,967,163	+		GFF2905	0.26	+0.8
2,967,163	+		GFF2905	0.26	+0.8
2,967,171	+		GFF2905	0.27	-0.7
2,967,171	-		GFF2905	0.27	-0.5
2,967,171	-		GFF2905	0.27	+0.1
2,967,171	-		GFF2905	0.27	-0.5
2,967,177	+		GFF2905	0.28	+1.3
2,967,177	+		GFF2905	0.28	-0.8
2,967,177	-		GFF2905	0.28	+0.0
2,967,179	-		GFF2905	0.28	-1.7
2,967,179	-		GFF2905	0.28	-1.9
2,967,201	-		GFF2905	0.31	+0.3
2,967,232	+		GFF2905	0.34	+0.2
2,967,235	-		GFF2905	0.34	-0.7
2,967,245	+		GFF2905	0.35	-0.5
2,967,246	+		GFF2905	0.35	-0.1
2,967,252	+		GFF2905	0.36	+0.4
2,967,252	+		GFF2905	0.36	+0.1
2,967,252	+		GFF2905	0.36	+0.4
2,967,260	-		GFF2905	0.37	-2.5
2,967,272	+		GFF2905	0.38	+0.8
2,967,272	+		GFF2905	0.38	-0.6
2,967,274	+		GFF2905	0.38	-0.5
2,967,280	-		GFF2905	0.39	+0.0
2,967,280	-		GFF2905	0.39	-1.7
2,967,280	-		GFF2905	0.39	+0.3
2,967,280	-		GFF2905	0.39	-2.2
2,967,287	+		GFF2905	0.40	-0.1
2,967,294	-		GFF2905	0.41	-0.0
2,967,297	+		GFF2905	0.41	-2.5
2,967,335	+		GFF2905	0.45	-0.2
2,967,351	-		GFF2905	0.47	-0.2
2,967,360	+		GFF2905	0.48	-2.1
2,967,376	+		GFF2905	0.50	-1.2
2,967,382	-		GFF2905	0.50	-1.2
2,967,391	+		GFF2905	0.51	-0.4
2,967,419	+		GFF2905	0.54	-1.5
2,967,433	+		GFF2905	0.56	-2.9
2,967,433	+		GFF2905	0.56	+0.4
2,967,433	+		GFF2905	0.56	-0.4
2,967,433	+		GFF2905	0.56	-1.5
2,967,436	-		GFF2905	0.56	+0.4
2,967,440	+		GFF2905	0.57	+0.1
2,967,441	-		GFF2905	0.57	+0.8
2,967,453	-		GFF2905	0.58	-0.9
2,967,469	-		GFF2905	0.60	+0.9
2,967,471	+		GFF2905	0.60	+0.3
2,967,476	-		GFF2905	0.60	-2.6
2,967,479	-		GFF2905	0.61	-0.7
2,967,479	-		GFF2905	0.61	+0.4
2,967,479	-		GFF2905	0.61	-0.0
2,967,479	-		GFF2905	0.61	+0.1
2,967,495	+		GFF2905	0.63	-1.2
2,967,495	+		GFF2905	0.63	-0.3
2,967,495	+		GFF2905	0.63	-2.4
2,967,495	+		GFF2905	0.63	+0.7
2,967,501	+		GFF2905	0.63	+0.6
2,967,501	+		GFF2905	0.63	-2.1
2,967,501	+		GFF2905	0.63	+0.4
2,967,501	+		GFF2905	0.63	+0.8
2,967,502	+		GFF2905	0.63	-0.1
2,967,502	+		GFF2905	0.63	-1.4
2,967,502	+		GFF2905	0.63	+0.7
2,967,502	+		GFF2905	0.63	-0.2
2,967,502	+		GFF2905	0.63	-0.4
2,967,508	+		GFF2905	0.64	-0.4
2,967,508	+		GFF2905	0.64	-1.9
2,967,509	-		GFF2905	0.64	-2.0
2,967,509	-		GFF2905	0.64	-1.0
2,967,510	-		GFF2905	0.64	-0.7
2,967,510	-		GFF2905	0.64	-0.3
2,967,510	-		GFF2905	0.64	+0.1
2,967,513	+		GFF2905	0.64	+1.2
2,967,516	-		GFF2905	0.65	+1.1
2,967,522	+		GFF2905	0.65	-0.7
2,967,522	+		GFF2905	0.65	-0.2
2,967,530	-		GFF2905	0.66	-0.8
2,967,530	-		GFF2905	0.66	+0.5
2,967,536	+		GFF2905	0.67	-0.5
2,967,541	+		GFF2905	0.68	-0.1
2,967,549	-		GFF2905	0.68	+1.6
2,967,555	+		GFF2905	0.69	+0.7
2,967,561	+		GFF2905	0.70	+0.7
2,967,561	+		GFF2905	0.70	-0.6
2,967,564	-		GFF2905	0.70	-1.4
2,967,569	-		GFF2905	0.71	+0.3
2,967,572	+		GFF2905	0.71	+0.7
2,967,630	+		GFF2905	0.77	-2.4
2,967,630	+		GFF2905	0.77	-1.1
2,967,630	+		GFF2905	0.77	+1.4
2,967,630	+		GFF2905	0.77	+1.2
2,967,638	-		GFF2905	0.78	+0.6
2,967,638	-		GFF2905	0.78	-0.1
2,967,638	-		GFF2905	0.78	-1.9
2,967,656	+		GFF2905	0.80	+0.8
2,967,661	+		GFF2905	0.81	+0.3
2,967,661	+		GFF2905	0.81	-0.8
2,967,661	+		GFF2905	0.81	+0.3
2,967,662	+		GFF2905	0.81	-0.3
2,967,662	+		GFF2905	0.81	-1.2
2,967,663	+		GFF2905	0.81	-0.0
2,967,669	-		GFF2905	0.81	-0.2
2,967,669	-		GFF2905	0.81	+0.7
2,967,669	-		GFF2905	0.81	-0.2
2,967,670	-		GFF2905	0.82	-0.3
2,967,684	+		GFF2905	0.83	-0.3
2,967,744	+		GFF2905	0.90	-0.2
2,967,745	+		GFF2905	0.90	+0.4
2,967,752	+				-0.5
2,967,752	-				-0.3
2,967,766	-				-0.6
2,967,773	+				-0.4
2,967,805	-				+0.8
2,967,815	+				-0.4
2,967,849	+				-1.2
2,967,857	-				+0.4
2,967,857	-				-0.8
2,967,857	-				+0.3
2,967,857	-				-0.6
2,967,862	-				-0.7
2,967,935	-				-1.2
2,967,935	-				+0.2
2,967,940	-				+0.6
2,967,940	-				-0.3
2,967,972	+				-1.9
2,967,972	+				+0.3
2,967,972	+				+0.2
2,967,979	+				-1.2
2,967,980	-				-0.9
2,967,986	-				-1.0
2,967,997	-		GFF2906	0.10	-0.2
2,968,020	+		GFF2906	0.12	+0.6
2,968,023	-		GFF2906	0.12	+0.2
2,968,025	+		GFF2906	0.12	-0.6
2,968,053	+		GFF2906	0.14	+1.3
2,968,081	+		GFF2906	0.16	-0.6
2,968,081	+		GFF2906	0.16	-0.2
2,968,081	+		GFF2906	0.16	+0.4
2,968,081	+		GFF2906	0.16	+0.4
2,968,081	+		GFF2906	0.16	-2.0
2,968,081	+		GFF2906	0.16	-0.9
2,968,081	+		GFF2906	0.16	-0.7
2,968,081	+		GFF2906	0.16	-0.0
2,968,081	+		GFF2906	0.16	-1.5
2,968,089	-		GFF2906	0.17	+0.6
2,968,089	-		GFF2906	0.17	-2.0
2,968,089	-		GFF2906	0.17	-0.2
2,968,089	-		GFF2906	0.17	+0.3
2,968,089	-		GFF2906	0.17	-0.5
2,968,089	-		GFF2906	0.17	-0.6
2,968,089	-		GFF2906	0.17	+0.1
2,968,089	-		GFF2906	0.17	-0.4
2,968,089	-		GFF2906	0.17	+1.2
2,968,089	-		GFF2906	0.17	+0.4
2,968,094	-		GFF2906	0.17	-0.7
2,968,198	+		GFF2906	0.25	+0.2
2,968,198	+		GFF2906	0.25	-1.2
2,968,198	+		GFF2906	0.25	-0.5
2,968,206	-		GFF2906	0.25	+0.3
2,968,206	-		GFF2906	0.25	-0.5
2,968,207	+		GFF2906	0.25	+0.8
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