Strain Fitness in Sphingobium sp. HT1-2 around GFF2895

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,954,045	+				-1.8
2,954,045	+				-0.5
2,954,045	+				-0.9
2,954,045	+				-0.6
2,954,045	+				-1.1
2,954,046	-				-0.3
2,954,053	-				-1.2
2,954,053	-				+0.0
2,954,053	-				+1.7
2,954,053	-				+1.2
2,954,053	-				-1.6
2,955,064	-				-1.2
2,955,066	+				+0.1
2,955,100	-				-0.4
2,955,100	-				+1.1
2,955,145	-				+1.2
2,955,167	-				+0.1
2,955,170	+				+1.0
2,955,175	+				-2.5
2,955,175	+				-0.3
2,955,175	+				+0.6
2,955,175	+				+1.5
2,955,175	+				-0.2
2,955,175	+				+0.1
2,955,175	+				-2.0
2,955,178	-				+0.3
2,955,178	-				+0.1
2,955,178	-				-0.2
2,955,178	-				+0.5
2,955,178	-				+0.4
2,955,180	+				-1.3
2,955,180	+				-1.0
2,955,183	-				+0.6
2,955,183	-				+1.1
2,955,183	-				-0.4
2,955,183	-				-0.3
2,955,183	-				-0.2
2,955,188	-				-0.3
2,955,198	-				-0.8
2,955,213	+				-1.5
2,955,224	+				+1.3
2,955,224	+				-0.5
2,955,232	-				+0.7
2,955,263	-				-0.0
2,955,273	+		GFF2895	0.10	-0.4
2,955,273	+		GFF2895	0.10	+0.8
2,955,273	+		GFF2895	0.10	+0.0
2,955,273	+		GFF2895	0.10	-1.5
2,955,314	-		GFF2895	0.12	-1.8
2,955,333	+		GFF2895	0.13	+0.2
2,955,333	+		GFF2895	0.13	+0.9
2,955,333	+		GFF2895	0.13	-0.2
2,955,346	-		GFF2895	0.14	-0.2
2,955,348	+		GFF2895	0.14	-0.1
2,955,348	+		GFF2895	0.14	-0.2
2,955,348	+		GFF2895	0.14	+1.5
2,955,356	-		GFF2895	0.14	-0.1
2,955,356	-		GFF2895	0.14	-0.3
2,955,356	-		GFF2895	0.14	-0.3
2,955,356	-		GFF2895	0.14	-0.5
2,955,356	-		GFF2895	0.14	+0.1
2,955,399	+		GFF2895	0.16	-2.0
2,955,410	+		GFF2895	0.17	-3.0
2,955,419	-		GFF2895	0.17	+0.5
2,955,450	+		GFF2895	0.18	-0.8
2,955,450	+		GFF2895	0.18	+1.5
2,955,450	+		GFF2895	0.18	-0.0
2,955,455	+		GFF2895	0.19	-2.4
2,955,463	-		GFF2895	0.19	-2.0
2,955,491	+		GFF2895	0.20	-0.6
2,955,534	+		GFF2895	0.22	-1.6
2,955,552	-		GFF2895	0.23	+1.3
2,955,575	-		GFF2895	0.24	+0.6
2,955,609	-		GFF2895	0.26	+1.4
2,955,654	-		GFF2895	0.28	-3.0
2,955,664	-		GFF2895	0.28	+0.8
2,955,698	+		GFF2895	0.30	+0.6
2,955,703	+		GFF2895	0.30	-0.7
2,955,706	-		GFF2895	0.30	+0.5
2,955,706	-		GFF2895	0.30	-0.5
2,955,707	+		GFF2895	0.30	+0.5
2,955,711	-		GFF2895	0.30	-0.5
2,955,711	-		GFF2895	0.30	+0.2
2,955,713	+		GFF2895	0.30	-2.4
2,955,713	+		GFF2895	0.30	-1.6
2,955,713	+		GFF2895	0.30	-0.6
2,955,715	-		GFF2895	0.30	-2.2
2,955,716	-		GFF2895	0.30	+0.2
2,955,721	-		GFF2895	0.31	+1.3
2,955,721	-		GFF2895	0.31	-0.5
2,955,721	-		GFF2895	0.31	+0.6
2,955,721	-		GFF2895	0.31	-1.2
2,955,723	+		GFF2895	0.31	-0.3
2,955,723	+		GFF2895	0.31	-1.8
2,955,726	-		GFF2895	0.31	+0.5
2,955,779	-		GFF2895	0.33	+1.2
2,955,809	+		GFF2895	0.35	-0.2
2,955,809	+		GFF2895	0.35	+0.6
2,955,809	+		GFF2895	0.35	+0.0
2,955,809	+		GFF2895	0.35	-1.4
2,955,809	+		GFF2895	0.35	+0.1
2,955,809	+		GFF2895	0.35	-0.3
2,955,809	+		GFF2895	0.35	+0.6
2,955,809	+		GFF2895	0.35	+0.4
2,955,809	+		GFF2895	0.35	-2.6
2,955,809	+		GFF2895	0.35	+0.3
2,955,812	-		GFF2895	0.35	-0.5
2,955,817	-		GFF2895	0.35	+0.2
2,955,817	-		GFF2895	0.35	-0.7
2,955,817	-		GFF2895	0.35	-0.8
2,955,817	-		GFF2895	0.35	+0.4
2,955,817	-		GFF2895	0.35	-1.2
2,955,817	-		GFF2895	0.35	-0.0
2,955,817	-		GFF2895	0.35	+0.4
2,955,817	-		GFF2895	0.35	-1.2
2,955,818	-		GFF2895	0.35	-0.4
2,955,822	+		GFF2895	0.35	+1.1
2,955,822	+		GFF2895	0.35	-0.4
2,955,822	-		GFF2895	0.35	-2.3
2,955,828	-		GFF2895	0.35	-1.3
2,955,830	-		GFF2895	0.35	-1.4
2,955,831	+		GFF2895	0.35	-1.6
2,955,839	-		GFF2895	0.36	+0.3
2,955,839	-		GFF2895	0.36	-0.7
2,955,845	-		GFF2895	0.36	-0.3
2,955,859	-		GFF2895	0.37	-0.2
2,955,859	-		GFF2895	0.37	+0.4
2,955,860	-		GFF2895	0.37	+1.0
2,955,867	+		GFF2895	0.37	-1.0
2,955,874	-		GFF2895	0.37	-2.4
2,955,930	+		GFF2895	0.40	+0.2
2,955,955	-		GFF2895	0.41	+1.3
2,956,003	+		GFF2895	0.43	-0.8
2,956,019	-		GFF2895	0.44	-0.4
2,956,048	+		GFF2895	0.45	-1.7
2,956,055	-		GFF2895	0.46	-0.1
2,956,056	-		GFF2895	0.46	+0.2
2,956,056	-		GFF2895	0.46	-0.5
2,956,057	+		GFF2895	0.46	-1.3
2,956,057	+		GFF2895	0.46	-1.6
2,956,065	-		GFF2895	0.46	+0.1
2,956,065	-		GFF2895	0.46	-0.0
2,956,067	+		GFF2895	0.46	+0.0
2,956,067	+		GFF2895	0.46	-0.8
2,956,073	-		GFF2895	0.46	+0.2
2,956,083	-		GFF2895	0.47	+0.2
2,956,083	-		GFF2895	0.47	+1.4
2,956,098	+		GFF2895	0.47	+0.1
2,956,103	+		GFF2895	0.48	-0.8
2,956,106	-		GFF2895	0.48	+0.6
2,956,106	-		GFF2895	0.48	-0.6
2,956,106	-		GFF2895	0.48	+0.4
2,956,116	-		GFF2895	0.48	-0.0
2,956,135	+		GFF2895	0.49	-2.2
2,956,137	+		GFF2895	0.49	-0.6
2,956,147	+		GFF2895	0.50	-0.1
2,956,150	+		GFF2895	0.50	+0.1
2,956,164	+		GFF2895	0.50	-0.2
2,956,177	+		GFF2895	0.51	-0.7
2,956,195	+		GFF2895	0.52	-0.8
2,956,205	+		GFF2895	0.52	+1.2
2,956,218	-		GFF2895	0.53	+0.5
2,956,228	-		GFF2895	0.53	+0.3
2,956,267	-		GFF2895	0.55	-0.4
2,956,312	-		GFF2895	0.57	-0.4
2,956,312	-		GFF2895	0.57	+1.7
2,956,312	-		GFF2895	0.57	+1.4
2,956,317	-		GFF2895	0.57	+1.4
2,956,327	-		GFF2895	0.58	+0.1
2,956,329	+		GFF2895	0.58	+1.2
2,956,329	+		GFF2895	0.58	-1.2
2,956,337	-		GFF2895	0.58	+0.0
2,956,337	-		GFF2895	0.58	+0.4
2,956,349	-		GFF2895	0.59	-0.4
2,956,351	+		GFF2895	0.59	+0.6
2,956,351	+		GFF2895	0.59	-1.4
2,956,351	+		GFF2895	0.59	-1.3
2,956,351	+		GFF2895	0.59	-2.4
2,956,351	+		GFF2895	0.59	-1.7
2,956,351	+		GFF2895	0.59	+0.4
2,956,351	+		GFF2895	0.59	-2.8
2,956,351	+		GFF2895	0.59	+0.4
2,956,351	+		GFF2895	0.59	-1.1
2,956,354	-		GFF2895	0.59	-0.5
2,956,359	-		GFF2895	0.59	-0.3
2,956,359	-		GFF2895	0.59	-0.5
2,956,359	-		GFF2895	0.59	-0.5
2,956,359	-		GFF2895	0.59	-0.8
2,956,359	-		GFF2895	0.59	-0.3
2,956,359	-		GFF2895	0.59	+1.2
2,956,359	-		GFF2895	0.59	-0.2
2,956,359	-		GFF2895	0.59	+0.4
2,956,359	-		GFF2895	0.59	-1.6
2,956,359	-		GFF2895	0.59	+0.7
2,956,422	-		GFF2895	0.62	-1.8
2,956,427	-		GFF2895	0.62	-1.7
2,956,448	-		GFF2895	0.63	+0.1
2,956,452	+		GFF2895	0.63	+0.1
2,956,459	-		GFF2895	0.64	+0.3
2,956,485	+		GFF2895	0.65	-0.6
2,956,485	+		GFF2895	0.65	+0.2
2,956,487	+		GFF2895	0.65	+0.7
2,956,495	-		GFF2895	0.65	+0.5
2,956,495	-		GFF2895	0.65	-0.3
2,956,495	-		GFF2895	0.65	+1.2
2,956,526	+		GFF2895	0.67	-1.5
2,956,554	-		GFF2895	0.68	-0.5
2,956,589	-		GFF2895	0.70	-0.2
2,956,589	-		GFF2895	0.70	+1.7
2,956,589	-		GFF2895	0.70	+1.5
2,956,601	-		GFF2895	0.70	-1.8
2,956,610	+		GFF2895	0.70	-0.6
2,956,617	-		GFF2895	0.71	+0.5
2,956,617	-		GFF2895	0.71	-0.2
2,956,622	-		GFF2895	0.71	+0.2
2,956,632	+		GFF2895	0.71	+1.2
2,956,632	+		GFF2895	0.71	-0.0
2,956,632	+		GFF2895	0.71	-0.8
2,956,640	-		GFF2895	0.72	+1.3
2,956,640	-		GFF2895	0.72	+0.6
2,956,640	-		GFF2895	0.72	+0.6
2,956,640	-		GFF2895	0.72	-1.5
2,956,640	-		GFF2895	0.72	+1.0
2,956,640	-		GFF2895	0.72	-0.0
2,956,640	-		GFF2895	0.72	-2.1
2,956,644	+		GFF2895	0.72	-0.4
2,956,652	-		GFF2895	0.72	-0.1
2,956,652	-		GFF2895	0.72	+0.5
2,956,656	+		GFF2895	0.73	+0.7
2,956,720	-		GFF2895	0.75	-2.1
2,956,748	-		GFF2895	0.77	+0.6
2,956,770	+		GFF2895	0.78	-1.1
2,956,778	-		GFF2895	0.78	-0.7
2,956,778	-		GFF2895	0.78	-0.6
2,956,778	-		GFF2895	0.78	+0.8
2,956,788	+		GFF2895	0.78	-0.2
2,956,788	+		GFF2895	0.78	-0.2
2,956,788	+		GFF2895	0.78	-1.4
2,956,796	-		GFF2895	0.79	+2.2
2,956,796	-		GFF2895	0.79	-2.7
2,956,796	-		GFF2895	0.79	-0.6
2,956,796	-		GFF2895	0.79	+0.4
2,956,796	-		GFF2895	0.79	+0.8
2,956,796	-		GFF2895	0.79	-1.3
2,956,796	-		GFF2895	0.79	-0.5
2,956,799	-		GFF2895	0.79	-0.6
2,956,801	-		GFF2895	0.79	+0.2
2,956,834	-		GFF2895	0.81	+0.6
2,956,835	-		GFF2895	0.81	+0.3
2,956,866	-		GFF2895	0.82	-1.4
2,956,888	+		GFF2895	0.83	+0.1
2,956,937	+		GFF2895	0.85	-0.2
2,956,937	+		GFF2895	0.85	-0.1
2,956,943	+		GFF2895	0.85	-0.3
2,956,945	-		GFF2895	0.86	-0.5
2,956,979	+		GFF2895	0.87	-0.2
2,956,987	-		GFF2895	0.87	-0.9
2,956,992	-		GFF2895	0.88	-0.3
2,957,003	+		GFF2895	0.88	-0.5
2,957,003	+		GFF2895	0.88	-1.2
2,957,003	+		GFF2895	0.88	+0.1
2,957,003	+		GFF2895	0.88	-2.0
2,957,011	-		GFF2895	0.88	-0.0
2,957,011	-		GFF2895	0.88	+0.0
2,957,011	-		GFF2895	0.88	+0.8
2,957,011	-		GFF2895	0.88	+0.1
2,957,011	-		GFF2895	0.88	+1.6
2,957,011	-		GFF2895	0.88	-0.1
2,957,019	-		GFF2895	0.89	+0.4
2,957,031	+		GFF2895	0.89	+1.1
2,957,067	+				+0.8
2,957,082	-				+0.1
2,957,088	-				-0.2
2,957,106	+				-0.6
2,957,106	-				-1.0
2,957,111	+				+0.2
2,957,111	+				+0.1
2,957,111	+				-0.0
2,957,119	-				-1.5
2,957,119	-				-0.8
2,957,130	+				+0.3
2,957,130	+				-1.5
2,957,138	-				+0.3
2,957,138	-				-0.1
2,957,153	-				+0.6
2,957,162	-				+0.0
2,957,205	+				-0.7
2,957,205	+				-1.2
2,957,205	+				+0.4
2,957,210	+				+1.0
2,957,210	+				-1.6
2,957,210	+				+0.2
2,957,210	+				+0.8
2,957,210	+				+0.8
2,957,210	+				+0.7
2,957,210	+				+0.1
2,957,210	+				+1.0
2,957,210	+				+0.7
2,957,210	+				-0.1
2,957,213	-				+1.2
2,957,213	-				+1.1
2,957,213	-				+0.4
2,957,213	-				-0.2
2,957,218	-				-0.1
2,957,218	-				+0.7
2,957,218	-				+0.1
2,957,218	-				-0.2
2,957,218	-				-0.5
2,957,218	-				-0.3
2,957,218	-				+0.8
2,957,218	-				-0.3
2,957,218	-				-0.1
2,957,218	-				-0.5
2,957,218	-				+0.2
2,957,218	-				-0.1
2,957,218	-				-0.2
2,957,220	+				+0.0
2,957,238	+				+0.7
2,957,241	+				-1.9
2,957,246	-				+0.5
2,957,253	+				-0.9
2,957,261	+				+1.5
2,957,261	+				-0.6
2,957,269	-				-0.4
2,957,269	-				+0.6
2,957,269	-				+1.4
2,957,269	-				+0.4
2,957,269	-				-1.4
2,957,269	-				-1.0
2,957,269	-				-1.2
2,957,269	-				-0.3
2,957,269	-				+0.7
2,957,274	-				+0.9
2,957,274	-				-1.2
2,957,274	-				-0.4
2,957,274	-				-0.7
2,957,274	-				-0.8
2,957,276	+				-0.9
2,957,282	+				-0.2
2,957,284	-				-1.2
2,957,284	-				-0.8
2,957,284	-				-1.2
2,957,284	-				+1.0
2,957,284	-				-0.4
2,957,284	-				+0.0
2,957,308	-				-0.5
2,957,308	-				+0.3
2,957,315	+				-0.2
2,957,323	-				+1.0
2,957,330	-				-2.1
2,957,342	+				-2.8
2,957,352	+				-0.2
2,957,352	+				+1.2
2,957,352	+				-1.2
2,957,355	-				-0.4
2,957,355	-				-0.0
2,957,357	+				-2.4
2,957,357	+				+0.5
2,957,357	+				-1.2
2,957,357	+				-0.3
2,957,358	+				-1.3
2,957,358	+				+0.2
2,957,360	-				+0.4
2,957,360	-				-0.4
2,957,360	-				-0.7
2,957,360	-				-0.6
2,957,360	-				+1.1
2,957,360	-				-0.1
2,957,360	-				-0.2
2,957,360	-				+0.4
2,957,365	-				-0.0
2,957,365	-				+1.0
2,957,365	-				+0.2
2,957,365	-				+0.3
2,957,365	-				-0.6
2,957,365	-				+0.1
2,957,366	-				+0.4
2,957,366	-				+1.5
2,957,377	+				-0.4
2,957,390	-				-1.6
2,957,391	-				+1.4
2,957,399	+				-0.9
2,957,409	+		GFF2896	0.11	-0.7
2,957,409	+		GFF2896	0.11	-1.2
2,957,409	+		GFF2896	0.11	+0.2
2,957,417	+		GFF2896	0.13	+0.3
2,957,417	-		GFF2896	0.13	+0.0
2,957,417	-		GFF2896	0.13	-0.2
2,957,417	-		GFF2896	0.13	+0.8
2,957,417	-		GFF2896	0.13	-1.0
2,957,420	-		GFF2896	0.14	+0.3
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2,957,766	+				+0.1
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2,957,774	-				+0.9
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2,957,791	-				-1.9
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2,957,807	+				+0.5
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2,957,810	-				-0.2
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