Strain Fitness in Sphingobium sp. HT1-2 around GFF2811

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,852,515	+		GFF2810	0.40	-1.5
2,852,515	+		GFF2810	0.40	-0.6
2,852,515	+		GFF2810	0.40	-0.6
2,852,515	+		GFF2810	0.40	-0.6
2,852,515	+		GFF2810	0.40	-2.6
2,852,515	+		GFF2810	0.40	+0.4
2,852,523	-		GFF2810	0.40	-0.4
2,852,523	-		GFF2810	0.40	+1.0
2,852,523	-		GFF2810	0.40	+0.5
2,852,523	-		GFF2810	0.40	-0.1
2,852,523	-		GFF2810	0.40	-2.3
2,852,531	+		GFF2810	0.41	-0.2
2,852,533	+		GFF2810	0.41	+0.1
2,852,541	-		GFF2810	0.41	-0.4
2,852,549	-		GFF2810	0.42	-0.5
2,852,549	-		GFF2810	0.42	-2.3
2,852,565	-		GFF2810	0.43	-0.8
2,852,626	-		GFF2810	0.46	-0.4
2,852,626	-		GFF2810	0.46	-2.1
2,852,631	-		GFF2810	0.47	-0.5
2,852,650	+		GFF2810	0.48	-2.2
2,852,650	+		GFF2810	0.48	+1.3
2,852,658	-		GFF2810	0.48	+1.2
2,852,663	+		GFF2810	0.49	+0.9
2,852,671	-		GFF2810	0.49	-1.1
2,852,671	-		GFF2810	0.49	+1.3
2,852,694	+		GFF2810	0.51	+0.2
2,852,696	+		GFF2810	0.51	-0.2
2,852,726	+		GFF2810	0.53	-0.5
2,852,731	+		GFF2810	0.53	-0.3
2,852,734	-		GFF2810	0.53	-0.4
2,852,739	+		GFF2810	0.53	+0.4
2,852,747	-		GFF2810	0.54	-1.1
2,852,754	+		GFF2810	0.54	+1.7
2,852,756	+		GFF2810	0.55	-1.8
2,852,756	+		GFF2810	0.55	+0.3
2,852,762	-		GFF2810	0.55	-0.1
2,852,762	-		GFF2810	0.55	-1.2
2,852,764	-		GFF2810	0.55	-0.2
2,852,764	-		GFF2810	0.55	+0.3
2,852,764	-		GFF2810	0.55	-0.4
2,852,765	-		GFF2810	0.55	-0.3
2,852,765	-		GFF2810	0.55	-0.5
2,852,784	-		GFF2810	0.56	-0.3
2,852,832	-		GFF2810	0.59	+1.2
2,852,836	+		GFF2810	0.59	+1.1
2,852,836	+		GFF2810	0.59	+0.4
2,852,836	+		GFF2810	0.59	-1.3
2,852,836	+		GFF2810	0.59	-0.5
2,852,836	+		GFF2810	0.59	-0.6
2,852,837	-		GFF2810	0.60	-1.0
2,852,837	-		GFF2810	0.60	-1.1
2,852,837	-		GFF2810	0.60	-0.1
2,852,837	-		GFF2810	0.60	-0.5
2,852,844	-		GFF2810	0.60	-1.7
2,852,844	-		GFF2810	0.60	-2.5
2,852,844	-		GFF2810	0.60	-0.6
2,852,849	-		GFF2810	0.60	-0.4
2,852,849	-		GFF2810	0.60	+0.0
2,852,850	+		GFF2810	0.60	-2.0
2,852,850	+		GFF2810	0.60	+0.3
2,852,850	+		GFF2810	0.60	+0.0
2,852,850	+		GFF2810	0.60	-2.1
2,852,858	-		GFF2810	0.61	-0.6
2,852,858	-		GFF2810	0.61	-0.2
2,852,890	+		GFF2810	0.63	-0.9
2,852,890	-		GFF2810	0.63	+0.9
2,852,909	+		GFF2810	0.64	+2.0
2,852,929	-		GFF2810	0.65	-0.4
2,852,931	+		GFF2810	0.65	-1.1
2,852,940	+		GFF2810	0.66	-0.4
2,852,942	+		GFF2810	0.66	-0.3
2,852,942	+		GFF2810	0.66	-0.0
2,852,942	+		GFF2810	0.66	-1.3
2,852,942	+		GFF2810	0.66	-0.5
2,852,947	+		GFF2810	0.66	-1.2
2,852,950	-		GFF2810	0.66	+1.1
2,852,950	-		GFF2810	0.66	+0.6
2,852,955	-		GFF2810	0.67	-0.3
2,852,955	-		GFF2810	0.67	-0.5
2,852,970	+		GFF2810	0.68	-2.6
2,852,974	+		GFF2810	0.68	-1.4
2,852,974	+		GFF2810	0.68	+0.3
2,852,975	-		GFF2810	0.68	-2.1
2,852,983	-		GFF2810	0.69	-0.6
2,852,991	-		GFF2810	0.69	-0.3
2,853,020	+		GFF2810	0.71	+0.3
2,853,029	+		GFF2810	0.71	+0.5
2,853,060	-		GFF2810	0.73	-0.5
2,853,062	+		GFF2810	0.73	-1.3
2,853,062	-		GFF2810	0.73	+0.6
2,853,070	-		GFF2810	0.74	-1.0
2,853,092	+		GFF2810	0.75	-0.5
2,853,093	+		GFF2810	0.75	+0.4
2,853,101	-		GFF2810	0.76	-1.4
2,853,101	-		GFF2810	0.76	+0.0
2,853,103	+		GFF2810	0.76	-1.5
2,853,107	+		GFF2810	0.76	-0.3
2,853,109	+		GFF2810	0.76	-0.1
2,853,110	+		GFF2810	0.76	-0.3
2,853,111	-		GFF2810	0.76	+0.7
2,853,123	-		GFF2810	0.77	-0.1
2,853,128	-		GFF2810	0.77	-1.4
2,853,128	-		GFF2810	0.77	-0.4
2,853,145	-		GFF2810	0.79	-0.8
2,853,148	+		GFF2810	0.79	-0.7
2,853,148	+		GFF2810	0.79	+1.4
2,853,151	-		GFF2810	0.79	+1.2
2,853,151	-		GFF2810	0.79	-2.1
2,853,151	-		GFF2810	0.79	-0.5
2,853,156	-		GFF2810	0.79	+0.1
2,853,161	+		GFF2810	0.80	+0.2
2,853,163	+		GFF2810	0.80	+0.2
2,853,165	+		GFF2810	0.80	-0.5
2,853,173	-		GFF2810	0.80	-0.2
2,853,182	+		GFF2810	0.81	-2.1
2,853,183	+		GFF2810	0.81	+0.3
2,853,184	+		GFF2810	0.81	+0.7
2,853,193	+		GFF2810	0.81	-0.4
2,853,193	+		GFF2810	0.81	-0.7
2,853,193	+		GFF2810	0.81	-1.6
2,853,193	+		GFF2810	0.81	+0.9
2,853,201	-		GFF2810	0.82	-1.6
2,853,201	-		GFF2810	0.82	-0.7
2,853,212	-		GFF2810	0.83	+0.2
2,853,224	+		GFF2810	0.83	+0.1
2,853,230	+		GFF2810	0.84	-0.6
2,853,232	-		GFF2810	0.84	-0.3
2,853,235	+		GFF2810	0.84	-0.2
2,853,240	+		GFF2810	0.84	+0.3
2,853,240	+		GFF2810	0.84	-1.7
2,853,240	+		GFF2810	0.84	-0.2
2,853,248	-		GFF2810	0.85	-1.8
2,853,248	-		GFF2810	0.85	-1.4
2,853,248	-		GFF2810	0.85	+0.8
2,853,248	-		GFF2810	0.85	-0.5
2,853,248	-		GFF2810	0.85	-0.9
2,853,248	-		GFF2810	0.85	-0.8
2,853,248	-		GFF2810	0.85	-2.4
2,853,248	-		GFF2810	0.85	+0.5
2,853,266	+		GFF2810	0.86	-0.2
2,853,266	+		GFF2810	0.86	-2.8
2,853,271	+		GFF2810	0.86	-0.4
2,853,274	-		GFF2810	0.86	-0.8
2,853,279	-		GFF2810	0.87	-1.4
2,853,284	-		GFF2810	0.87	-0.4
2,853,291	-		GFF2810	0.88	+0.2
2,853,292	+		GFF2810	0.88	-1.1
2,853,293	+		GFF2810	0.88	-0.2
2,853,301	-		GFF2810	0.88	+0.7
2,853,301	-		GFF2810	0.88	+0.2
2,853,301	-		GFF2810	0.88	-0.8
2,853,301	-		GFF2810	0.88	+0.1
2,853,303	+		GFF2810	0.88	+0.2
2,853,311	-		GFF2810	0.89	-2.3
2,853,347	+				-0.6
2,853,351	+				-0.5
2,853,351	+				-0.2
2,853,352	-				+0.4
2,853,359	-				-0.6
2,853,363	-				-0.7
2,853,409	+				+1.4
2,853,428	+				-1.4
2,853,435	-				+0.7
2,853,436	-				-0.6
2,853,438	+				-0.3
2,853,438	+				-1.3
2,853,438	+				-0.7
2,853,440	-				-2.0
2,853,446	+				-0.7
2,853,446	-				+0.5
2,853,464	+				+0.0
2,853,464	+				-0.5
2,853,464	+				-0.6
2,853,469	-				+0.8
2,853,488	-				-0.1
2,853,498	-				-0.8
2,853,504	+				+0.2
2,853,504	+				-1.0
2,853,504	+				-0.3
2,853,504	+				+0.3
2,853,504	+				-0.6
2,853,504	+				-0.4
2,853,504	+				-1.0
2,853,504	+				+0.4
2,853,512	-				-0.3
2,853,512	-				-1.1
2,853,512	-				+0.1
2,853,512	-				+0.6
2,853,512	-				-2.3
2,853,512	-				-1.8
2,853,512	-				+0.2
2,853,512	-				-0.7
2,853,512	-				+0.4
2,853,562	+		GFF2811	0.16	-1.4
2,853,567	+		GFF2811	0.18	-0.8
2,853,567	+		GFF2811	0.18	-3.2
2,853,570	-		GFF2811	0.19	+0.1
2,853,570	-		GFF2811	0.19	+0.6
2,853,572	+		GFF2811	0.19	-0.0
2,853,575	-		GFF2811	0.20	-1.3
2,853,580	-		GFF2811	0.21	-1.0
2,853,591	+		GFF2811	0.25	+1.0
2,853,596	+		GFF2811	0.26	-0.8
2,853,606	+		GFF2811	0.29	-0.5
2,853,606	+		GFF2811	0.29	+0.9
2,853,606	+		GFF2811	0.29	-0.1
2,853,606	+		GFF2811	0.29	-0.8
2,853,606	+		GFF2811	0.29	-0.9
2,853,606	+		GFF2811	0.29	-0.6
2,853,606	+		GFF2811	0.29	+0.8
2,853,606	+		GFF2811	0.29	-1.4
2,853,606	+		GFF2811	0.29	-1.0
2,853,606	+		GFF2811	0.29	+0.5
2,853,606	+		GFF2811	0.29	-0.5
2,853,606	+		GFF2811	0.29	-0.4
2,853,606	+		GFF2811	0.29	-2.5
2,853,611	+		GFF2811	0.30	+0.3
2,853,611	+		GFF2811	0.30	-0.7
2,853,614	-		GFF2811	0.31	+0.9
2,853,614	-		GFF2811	0.31	-0.4
2,853,614	-		GFF2811	0.31	+0.7
2,853,614	-		GFF2811	0.31	-0.1
2,853,614	-		GFF2811	0.31	-0.1
2,853,614	-		GFF2811	0.31	+0.3
2,853,614	-		GFF2811	0.31	-0.5
2,853,614	-		GFF2811	0.31	-0.6
2,853,614	-		GFF2811	0.31	+0.1
2,853,614	-		GFF2811	0.31	-0.7
2,853,614	-		GFF2811	0.31	-0.1
2,853,614	-		GFF2811	0.31	-0.4
2,853,614	-		GFF2811	0.31	-1.4
2,853,614	-		GFF2811	0.31	-0.3
2,853,614	-		GFF2811	0.31	-0.4
2,853,614	-		GFF2811	0.31	+0.0
2,853,619	-		GFF2811	0.33	-0.5
2,853,619	-		GFF2811	0.33	+0.7
2,853,619	-		GFF2811	0.33	-3.1
2,853,619	-		GFF2811	0.33	-0.1
2,853,619	-		GFF2811	0.33	-2.3
2,853,659	+		GFF2811	0.44	-0.4
2,853,675	+		GFF2811	0.49	-0.7
2,853,675	+		GFF2811	0.49	+0.0
2,853,675	+		GFF2811	0.49	+1.1
2,853,675	+		GFF2811	0.49	+1.0
2,853,675	+		GFF2811	0.49	-1.3
2,853,679	+		GFF2811	0.50	+0.7
2,853,683	-		GFF2811	0.51	-3.1
2,853,683	-		GFF2811	0.51	-1.6
2,853,683	-		GFF2811	0.51	-0.3
2,853,683	-		GFF2811	0.51	-0.1
2,853,683	-		GFF2811	0.51	-0.7
2,853,683	-		GFF2811	0.51	+0.8
2,853,692	-		GFF2811	0.54	-1.5
2,853,692	-		GFF2811	0.54	+0.9
2,853,731	-		GFF2811	0.65	-0.6
2,853,738	+		GFF2811	0.67	-0.6
2,853,783	+		GFF2811	0.80	+0.8
2,853,824	-				-0.2
2,853,833	+				+2.1
2,853,838	+				-0.7
2,853,841	-				+0.0
2,853,848	+				-1.1
2,853,860	-				-1.9
2,853,870	-				+0.6
2,853,887	+				-1.9
2,853,892	+				+0.3
2,853,892	+				-1.2
2,853,892	+				+0.2
2,853,900	-				+0.5
2,853,938	-		GFF2812	0.12	-0.1
2,853,940	+		GFF2812	0.12	+0.6
2,853,940	+		GFF2812	0.12	-0.6
2,853,940	+		GFF2812	0.12	-1.8
2,853,940	+		GFF2812	0.12	+0.9
2,853,948	-		GFF2812	0.13	-0.5
2,853,948	-		GFF2812	0.13	-1.3
2,853,948	-		GFF2812	0.13	-0.5
2,853,958	-		GFF2812	0.15	-0.9
2,853,988	+		GFF2812	0.19	-2.6
2,853,993	+		GFF2812	0.19	+1.1
2,854,008	+		GFF2812	0.21	-1.2
2,854,013	+		GFF2812	0.22	-0.5
2,854,016	-		GFF2812	0.22	+1.0
2,854,021	-		GFF2812	0.23	+0.4
2,854,021	-		GFF2812	0.23	+1.6
2,854,026	-		GFF2812	0.24	+0.1
2,854,027	+		GFF2812	0.24	-1.0
2,854,042	+		GFF2812	0.26	-0.4
2,854,042	+		GFF2812	0.26	-0.6
2,854,043	-		GFF2812	0.26	-1.9
2,854,059	+		GFF2812	0.28	+1.2
2,854,060	-		GFF2812	0.28	+0.0
2,854,061	+		GFF2812	0.28	-1.1
2,854,062	-		GFF2812	0.28	-0.6
2,854,089	-		GFF2812	0.32	-0.3
2,854,109	+		GFF2812	0.35	-0.4
2,854,109	+		GFF2812	0.35	-1.9
2,854,109	+		GFF2812	0.35	+1.0
2,854,109	+		GFF2812	0.35	-0.4
2,854,109	+		GFF2812	0.35	-0.7
2,854,109	+		GFF2812	0.35	-0.8
2,854,109	+		GFF2812	0.35	-0.4
2,854,109	+		GFF2812	0.35	-0.6
2,854,114	+		GFF2812	0.35	-0.4
2,854,117	-		GFF2812	0.36	-1.6
2,854,118	-		GFF2812	0.36	-0.7
2,854,122	-		GFF2812	0.37	-0.5
2,854,131	-		GFF2812	0.38	+0.3
2,854,132	+		GFF2812	0.38	+0.0
2,854,167	-		GFF2812	0.43	-1.2
2,854,173	+		GFF2812	0.43	-2.0
2,854,173	+		GFF2812	0.43	+0.4
2,854,176	-		GFF2812	0.44	-1.0
2,854,190	+		GFF2812	0.46	+0.3
2,854,190	+		GFF2812	0.46	-2.2
2,854,195	+		GFF2812	0.46	+0.8
2,854,227	-		GFF2812	0.51	-0.1
2,854,227	-		GFF2812	0.51	-0.6
2,854,227	-		GFF2812	0.51	+0.2
2,854,229	+		GFF2812	0.51	-1.4
2,854,237	-		GFF2812	0.52	-0.7
2,854,243	+		GFF2812	0.53	-0.5
2,854,243	+		GFF2812	0.53	+0.7
2,854,253	+		GFF2812	0.54	+0.5
2,854,253	+		GFF2812	0.54	-0.2
2,854,253	+		GFF2812	0.54	-1.6
2,854,253	+		GFF2812	0.54	+0.8
2,854,253	+		GFF2812	0.54	-2.2
2,854,265	-		GFF2812	0.56	+0.6
2,854,268	+		GFF2812	0.56	-0.2
2,854,276	-		GFF2812	0.57	+0.7
2,854,276	-		GFF2812	0.57	+1.4
2,854,276	-		GFF2812	0.57	-1.4
2,854,276	-		GFF2812	0.57	+0.8
2,854,276	-		GFF2812	0.57	-0.6
2,854,276	-		GFF2812	0.57	+1.2
2,854,290	+		GFF2812	0.59	-0.8
2,854,291	+		GFF2812	0.59	+1.2
2,854,291	+		GFF2812	0.59	-2.2
2,854,299	-		GFF2812	0.60	+1.3
2,854,320	-		GFF2812	0.63	+2.0
2,854,320	-		GFF2812	0.63	+1.0
2,854,365	-		GFF2812	0.69	+0.3
2,854,397	+		GFF2812	0.74	-0.2
2,854,403	+		GFF2812	0.74	+0.8
2,854,403	-		GFF2812	0.74	+0.1
2,854,410	-		GFF2812	0.75	-0.6
2,854,411	-		GFF2812	0.75	+0.3
2,854,413	+		GFF2812	0.76	-1.6
2,854,413	+		GFF2812	0.76	-0.8
2,854,421	-		GFF2812	0.77	+0.4
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2,854,437	+		GFF2812	0.79	-0.2
2,854,445	-		GFF2812	0.80	-0.9
2,854,445	-		GFF2812	0.80	+0.3
2,854,445	-		GFF2812	0.80	-1.5
2,854,445	-		GFF2812	0.80	-0.9
2,854,455	+		GFF2812	0.81	-2.5
2,854,482	+		GFF2812	0.85	-0.5
2,854,504	+		GFF2812	0.88	+2.5
2,854,511	+		GFF2812	0.89	-1.5
2,854,511	+		GFF2812	0.89	+0.4
2,854,516	+		GFF2812	0.90	+1.3
2,854,519	-				-0.6
2,854,541	+				-0.3
2,854,549	-				-0.9
2,854,560	+				+0.1
2,854,581	+				-0.6
2,854,586	+				+2.0
2,854,586	+				-0.7
2,854,588	+				+0.0
2,854,594	-				-0.2
2,854,594	-				-2.6
2,854,608	+				-0.7
2,854,617	+				-0.9
2,854,676	+				+0.0
2,854,676	-				+0.3
2,854,676	-				-1.3
2,854,715	-		GFF2813	0.10	+1.1
2,854,738	+		GFF2813	0.12	-0.3
2,854,742	+		GFF2813	0.13	-0.5
2,854,750	-		GFF2813	0.13	+0.9
2,854,761	+		GFF2813	0.14	-1.4
2,854,777	+		GFF2813	0.16	+0.8
2,854,777	+		GFF2813	0.16	+1.0
2,854,785	-		GFF2813	0.16	+1.5
2,854,785	-		GFF2813	0.16	-0.1