Strain Fitness in Sphingobium sp. HT1-2 around GFF2699

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,719,770	+				+0.3
2,719,770	+				-0.8
2,719,785	+				+0.0
2,719,790	-				+0.1
2,719,797	-				+0.9
2,719,809	+				-0.5
2,719,812	-				+0.2
2,719,812	-				+0.4
2,719,819	-				-0.6
2,719,836	+				+0.0
2,719,847	+		GFF2697	0.11	+0.8
2,719,853	-		GFF2697	0.12	+0.1
2,719,855	+		GFF2697	0.13	+1.5
2,719,859	+		GFF2697	0.13	+0.6
2,719,863	-		GFF2697	0.14	-0.3
2,719,863	-		GFF2697	0.14	-0.8
2,719,873	+		GFF2697	0.16	-2.3
2,719,873	+		GFF2697	0.16	-0.3
2,719,883	+		GFF2697	0.18	-0.4
2,719,883	+		GFF2697	0.18	-0.0
2,719,886	-		GFF2697	0.18	+0.6
2,719,889	+		GFF2697	0.19	-0.1
2,719,891	+		GFF2697	0.19	-0.3
2,719,897	-		GFF2697	0.20	+0.5
2,719,921	-		GFF2697	0.25	+0.7
2,719,930	+		GFF2697	0.27	-1.4
2,719,956	+		GFF2697	0.31	+1.1
2,719,959	-		GFF2697	0.32	-1.0
2,719,984	-		GFF2697	0.37	-1.3
2,719,986	+		GFF2697	0.37	+0.3
2,720,002	-		GFF2697	0.40	+0.4
2,720,004	-		GFF2697	0.40	+0.6
2,720,015	-		GFF2697	0.43	+0.9
2,720,043	+		GFF2697	0.48	-1.6
2,720,051	-		GFF2697	0.49	-0.3
2,720,067	-		GFF2697	0.52	-0.5
2,720,070	+		GFF2697	0.53	-0.1
2,720,070	+		GFF2697	0.53	+0.7
2,720,070	+		GFF2697	0.53	-0.6
2,720,078	-		GFF2697	0.54	-0.5
2,720,078	-		GFF2697	0.54	+0.3
2,720,078	-		GFF2697	0.54	+0.8
2,720,078	-		GFF2697	0.54	-0.2
2,720,088	+		GFF2697	0.56	-0.2
2,720,095	-		GFF2697	0.57	+0.8
2,720,095	-		GFF2697	0.57	-0.1
2,720,096	-		GFF2697	0.58	+0.1
2,720,116	+		GFF2697	0.61	+0.3
2,720,124	-		GFF2697	0.63	+1.3
2,720,124	-		GFF2697	0.63	+0.4
2,720,124	-		GFF2697	0.63	-0.7
2,720,131	+		GFF2697	0.64	-0.4
2,720,137	+		GFF2697	0.65	-0.2
2,720,145	-		GFF2697	0.67	+0.9
2,720,145	-		GFF2697	0.67	-0.5
2,720,145	-		GFF2697	0.67	-0.5
2,720,147	+		GFF2697	0.67	+1.4
2,720,150	-		GFF2697	0.68	+0.1
2,720,152	+		GFF2697	0.68	+0.1
2,720,152	+		GFF2697	0.68	-1.3
2,720,152	+		GFF2697	0.68	-1.6
2,720,152	+		GFF2697	0.68	-0.3
2,720,155	-		GFF2697	0.69	+0.5
2,720,160	-		GFF2697	0.70	+0.3
2,720,160	-		GFF2697	0.70	-0.7
2,720,160	-		GFF2697	0.70	-0.7
2,720,160	-		GFF2697	0.70	-1.4
2,720,166	+		GFF2697	0.71	+0.5
2,720,188	+		GFF2697	0.75	-1.0
2,720,190	-		GFF2697	0.75	+0.3
2,720,202	-		GFF2697	0.78	-1.5
2,720,225	+		GFF2697	0.82	+0.9
2,720,246	+		GFF2697	0.86	-0.1
2,720,246	+		GFF2697	0.86	-1.2
2,720,252	-		GFF2697	0.87	+1.1
2,720,253	+		GFF2697	0.87	+0.7
2,720,253	+		GFF2697	0.87	+0.3
2,720,254	-		GFF2697	0.87	-0.3
2,720,254	-		GFF2697	0.87	-0.4
2,720,254	-		GFF2697	0.87	+0.0
2,720,254	-		GFF2697	0.87	+1.0
2,720,254	-		GFF2697	0.87	-0.0
2,720,263	+		GFF2697	0.89	-0.4
2,720,271	+				+0.1
2,720,271	+				+0.7
2,720,273	+				+0.6
2,720,279	-				+0.1
2,720,281	-				-2.2
2,720,283	+				-1.6
2,720,288	+				+0.8
2,720,291	-				-0.5
2,720,291	-				-1.3
2,720,296	-				-1.2
2,720,309	+				+1.4
2,720,315	+				-0.1
2,720,316	-				-1.9
2,720,316	-				+0.3
2,720,318	-				-0.5
2,720,318	-				+0.8
2,720,323	-				-2.2
2,720,323	-				-0.3
2,720,323	-				-0.1
2,720,323	-				+0.1
2,720,323	-				-2.0
2,720,323	-				-2.7
2,720,347	-				-1.5
2,720,357	+				-1.6
2,720,357	+				+0.8
2,720,381	+				-0.9
2,720,389	+				+0.4
2,720,412	+				+0.4
2,720,413	+				+0.4
2,720,413	+				-0.2
2,720,413	+				-0.2
2,720,416	+				+0.7
2,720,416	-				-0.1
2,720,418	+				-0.8
2,720,418	+				+0.5
2,720,421	-				-0.7
2,720,421	-				-0.7
2,720,435	+				-1.1
2,720,435	+				+0.8
2,720,435	+				-2.0
2,720,440	+				+0.1
2,720,443	-				+0.9
2,720,443	-				+0.1
2,720,453	-				+1.5
2,720,465	+				+0.6
2,720,470	+				+0.6
2,720,503	+				+0.8
2,720,503	+				-0.5
2,720,503	+				-0.3
2,720,510	+		GFF2698	0.12	-0.5
2,720,510	+		GFF2698	0.12	-0.2
2,720,510	+		GFF2698	0.12	+0.7
2,720,510	+		GFF2698	0.12	-0.9
2,720,511	-		GFF2698	0.12	-0.1
2,720,515	+		GFF2698	0.14	-0.6
2,720,516	-		GFF2698	0.14	-1.7
2,720,518	-		GFF2698	0.15	+0.8
2,720,518	-		GFF2698	0.15	-0.4
2,720,518	-		GFF2698	0.15	+0.4
2,720,520	-		GFF2698	0.16	-0.3
2,720,528	-		GFF2698	0.19	+1.6
2,720,528	-		GFF2698	0.19	+0.1
2,720,570	+		GFF2698	0.37	+0.5
2,720,578	-		GFF2698	0.41	-1.3
2,720,578	-		GFF2698	0.41	-0.1
2,720,578	-		GFF2698	0.41	-0.4
2,720,637	+		GFF2698	0.65	-0.9
2,720,637	+		GFF2698	0.65	-1.1
2,720,637	+		GFF2698	0.65	-0.7
2,720,639	+		GFF2698	0.66	+0.3
2,720,645	-		GFF2698	0.69	+0.0
2,720,659	+		GFF2698	0.75	-1.3
2,720,666	-		GFF2698	0.78	+0.5
2,720,697	+				+1.3
2,720,697	+				-0.5
2,720,705	-				-0.1
2,720,705	-				-0.2
2,720,705	-				-1.6
2,720,721	+				+0.3
2,720,721	-				+0.7
2,720,721	-				-0.2
2,720,721	-				+1.0
2,720,721	-				-0.1
2,720,722	-				+0.8
2,720,746	+				+0.8
2,720,746	+				-1.4
2,720,757	+				-0.9
2,720,762	+				+0.2
2,720,787	-		GFF2699	0.15	+0.6
2,720,799	-		GFF2699	0.26	+0.5
2,720,810	+		GFF2699	0.35	-0.3
2,720,810	+		GFF2699	0.35	-1.6
2,720,810	+		GFF2699	0.35	-1.2
2,720,810	+		GFF2699	0.35	-0.1
2,720,810	+		GFF2699	0.35	-0.0
2,720,810	+		GFF2699	0.35	+1.5
2,720,810	+		GFF2699	0.35	-0.6
2,720,810	+		GFF2699	0.35	+0.7
2,720,810	+		GFF2699	0.35	+0.8
2,720,818	-		GFF2699	0.42	-0.4
2,720,818	-		GFF2699	0.42	+0.2
2,720,818	-		GFF2699	0.42	-0.1
2,720,818	-		GFF2699	0.42	-2.1
2,720,818	-		GFF2699	0.42	+0.1
2,720,875	-				+0.7
2,720,885	+				-0.7
2,720,899	-				+0.8
2,720,918	+				-1.4
2,720,920	-				-0.5
2,720,938	+				-1.2
2,720,945	+				+1.4
2,720,945	+				-0.7
2,720,953	-				+1.5
2,720,953	-				-1.4
2,721,029	-				-0.4
2,721,044	+				-1.4
2,721,044	+				-0.5
2,721,052	-				+0.9
2,721,057	-				-2.0
2,721,057	-				-0.1
2,721,080	+				+0.7
2,721,088	-				+0.1
2,721,117	-		GFF2700	0.16	-0.9
2,721,139	+		GFF2700	0.24	+1.1
2,721,139	+		GFF2700	0.24	+0.9
2,721,139	+		GFF2700	0.24	-0.5
2,721,142	-		GFF2700	0.25	-0.2
2,721,142	-		GFF2700	0.25	-0.7
2,721,147	-		GFF2700	0.27	+0.7
2,721,147	-		GFF2700	0.27	-0.0
2,721,164	-		GFF2700	0.33	-0.5
2,721,164	-		GFF2700	0.33	+1.3
2,721,175	+		GFF2700	0.37	-0.4
2,721,193	-		GFF2700	0.44	-1.3
2,721,194	+		GFF2700	0.44	-0.8
2,721,194	+		GFF2700	0.44	-0.9
2,721,204	+		GFF2700	0.48	-0.2
2,721,216	+		GFF2700	0.52	-0.2
2,721,221	-		GFF2700	0.54	+0.1
2,721,224	-		GFF2700	0.55	-0.1
2,721,231	+		GFF2700	0.58	-0.5
2,721,244	-		GFF2700	0.62	-0.4
2,721,249	+		GFF2700	0.64	-2.1
2,721,257	-		GFF2700	0.67	+0.8
2,721,265	-		GFF2700	0.70	-0.2
2,721,271	+		GFF2700	0.72	-1.4
2,721,294	+		GFF2700	0.80	-0.7
2,721,303	+		GFF2700	0.84	-0.9
2,721,304	+		GFF2700	0.84	+1.0
2,721,304	+		GFF2700	0.84	-1.2
2,721,304	+		GFF2700	0.84	-0.3
2,721,311	+		GFF2700	0.87	-0.4
2,721,312	-		GFF2700	0.87	-0.5
2,721,312	-		GFF2700	0.87	-0.9
2,721,312	-		GFF2700	0.87	+1.0
2,721,335	-				+0.1
2,721,338	+				-0.7
2,721,342	-				-0.2
2,721,352	+				+0.3
2,721,362	+				-1.0
2,721,367	+				+1.2
2,721,367	+				+0.6
2,721,372	+				+2.0
2,721,375	-				+0.4
2,721,375	-				-0.6
2,721,383	-				+0.3
2,721,393	+				-1.0
2,721,395	+				-0.7
2,721,403	-				+0.1
2,721,430	+				-0.5
2,721,446	+		GFF2701	0.11	+0.9
2,721,448	-		GFF2701	0.11	-0.2
2,721,452	-		GFF2701	0.11	-0.7
2,721,456	+		GFF2701	0.12	+0.8
2,721,464	-		GFF2701	0.13	-0.2
2,721,489	-		GFF2701	0.15	-1.2
2,721,491	+		GFF2701	0.15	-1.0
2,721,498	+		GFF2701	0.16	-0.1
2,721,498	+		GFF2701	0.16	-0.7
2,721,498	+		GFF2701	0.16	+0.2
2,721,499	-		GFF2701	0.16	+0.4
2,721,499	-		GFF2701	0.16	+0.0
2,721,499	-		GFF2701	0.16	+0.3
2,721,500	+		GFF2701	0.16	+0.3
2,721,506	-		GFF2701	0.17	-0.3
2,721,508	-		GFF2701	0.17	-1.7
2,721,528	-		GFF2701	0.19	+1.3
2,721,555	-		GFF2701	0.22	-1.2
2,721,569	-		GFF2701	0.24	-1.9
2,721,575	+		GFF2701	0.24	+1.9
2,721,575	+		GFF2701	0.24	-0.2
2,721,575	+		GFF2701	0.24	-0.6
2,721,575	+		GFF2701	0.24	-0.2
2,721,575	+		GFF2701	0.24	-1.1
2,721,575	+		GFF2701	0.24	+0.5
2,721,575	+		GFF2701	0.24	+0.8
2,721,575	+		GFF2701	0.24	+0.1
2,721,575	+		GFF2701	0.24	-1.9
2,721,575	+		GFF2701	0.24	+0.4
2,721,575	+		GFF2701	0.24	-2.2
2,721,575	+		GFF2701	0.24	-0.1
2,721,575	+		GFF2701	0.24	-0.4
2,721,575	+		GFF2701	0.24	+0.7
2,721,575	+		GFF2701	0.24	-0.2
2,721,575	+		GFF2701	0.24	+0.2
2,721,583	-		GFF2701	0.25	+0.0
2,721,583	-		GFF2701	0.25	+0.3
2,721,583	-		GFF2701	0.25	-0.7
2,721,583	-		GFF2701	0.25	+0.4
2,721,583	-		GFF2701	0.25	+0.0
2,721,583	-		GFF2701	0.25	-0.1
2,721,583	-		GFF2701	0.25	-0.1
2,721,583	-		GFF2701	0.25	-0.7
2,721,583	-		GFF2701	0.25	+0.3
2,721,583	-		GFF2701	0.25	+1.1
2,721,583	-		GFF2701	0.25	-1.0
2,721,583	-		GFF2701	0.25	+0.4
2,721,583	-		GFF2701	0.25	-0.2
2,721,583	-		GFF2701	0.25	+0.2
2,721,583	-		GFF2701	0.25	+0.3
2,721,599	+		GFF2701	0.27	+0.4
2,721,600	-		GFF2701	0.27	-0.6
2,721,635	+		GFF2701	0.31	+0.7
2,721,641	+		GFF2701	0.31	-1.2
2,721,673	+		GFF2701	0.35	-0.6
2,721,676	-		GFF2701	0.35	-2.3
2,721,676	-		GFF2701	0.35	-0.4
2,721,681	-		GFF2701	0.35	-0.1
2,721,704	-		GFF2701	0.38	+1.4
2,721,718	+		GFF2701	0.39	-2.7
2,721,718	+		GFF2701	0.39	-0.2
2,721,718	+		GFF2701	0.39	+0.1
2,721,726	-		GFF2701	0.40	-2.3
2,721,726	-		GFF2701	0.40	+0.8
2,721,749	+		GFF2701	0.43	+1.3
2,721,766	+		GFF2701	0.44	+0.4
2,721,778	+		GFF2701	0.46	+0.9
2,721,813	-		GFF2701	0.49	-0.1
2,721,813	-		GFF2701	0.49	+1.1
2,721,813	-		GFF2701	0.49	+0.6
2,721,825	+		GFF2701	0.51	-0.2
2,721,831	-		GFF2701	0.51	-1.4
2,721,831	-		GFF2701	0.51	+1.6
2,721,849	+		GFF2701	0.53	+0.9
2,721,849	+		GFF2701	0.53	-0.1
2,721,850	-		GFF2701	0.53	+0.2
2,721,860	+		GFF2701	0.54	+1.0
2,721,860	+		GFF2701	0.54	+1.1
2,721,860	+		GFF2701	0.54	-0.0
2,721,860	+		GFF2701	0.54	-0.3
2,721,861	+		GFF2701	0.54	+1.0
2,721,868	-		GFF2701	0.55	-1.7
2,721,868	-		GFF2701	0.55	+0.0
2,721,868	-		GFF2701	0.55	-0.3
2,721,875	+		GFF2701	0.56	+1.0