Strain Fitness in Sphingobium sp. HT1-2 around GFF2644

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,663,465	-		GFF2643	0.31	+0.4
2,663,479	+		GFF2643	0.32	-1.3
2,663,492	+		GFF2643	0.33	-1.6
2,663,497	-		GFF2643	0.33	+0.2
2,663,497	-		GFF2643	0.33	-1.3
2,663,497	-		GFF2643	0.33	-1.9
2,663,497	-		GFF2643	0.33	-1.0
2,663,508	-		GFF2643	0.34	-1.5
2,663,513	-		GFF2643	0.35	-0.2
2,663,560	-		GFF2643	0.39	-1.6
2,663,574	-		GFF2643	0.40	-1.2
2,663,581	+		GFF2643	0.40	-2.1
2,663,584	-		GFF2643	0.41	+0.3
2,663,598	+		GFF2643	0.42	-1.8
2,663,598	-		GFF2643	0.42	+0.7
2,663,604	-		GFF2643	0.42	+0.8
2,663,611	-		GFF2643	0.43	+0.0
2,663,616	-		GFF2643	0.43	+0.6
2,663,616	-		GFF2643	0.43	+0.2
2,663,624	-		GFF2643	0.44	-2.3
2,663,634	-		GFF2643	0.45	-0.6
2,663,639	-		GFF2643	0.45	-0.1
2,663,641	+		GFF2643	0.45	+0.2
2,663,641	+		GFF2643	0.45	-1.2
2,663,641	+		GFF2643	0.45	-1.1
2,663,644	-		GFF2643	0.46	-0.9
2,663,649	-		GFF2643	0.46	-1.1
2,663,661	-		GFF2643	0.47	-1.6
2,663,682	-		GFF2643	0.49	-1.3
2,663,685	-		GFF2643	0.49	-1.3
2,663,715	+		GFF2643	0.52	-1.1
2,663,715	+		GFF2643	0.52	-2.4
2,663,715	+		GFF2643	0.52	-2.9
2,663,715	+		GFF2643	0.52	+0.4
2,663,715	+		GFF2643	0.52	-0.2
2,663,723	-		GFF2643	0.52	+0.0
2,663,723	-		GFF2643	0.52	-1.0
2,663,723	-		GFF2643	0.52	+0.2
2,663,726	+		GFF2643	0.53	+0.3
2,663,727	+		GFF2643	0.53	-0.5
2,663,742	-		GFF2643	0.54	-0.2
2,663,742	-		GFF2643	0.54	-2.8
2,663,743	-		GFF2643	0.54	-0.2
2,663,755	+		GFF2643	0.55	-0.4
2,663,755	+		GFF2643	0.55	-0.0
2,663,762	-		GFF2643	0.56	-0.1
2,663,763	-		GFF2643	0.56	-0.7
2,663,763	-		GFF2643	0.56	-0.1
2,663,768	-		GFF2643	0.56	-1.5
2,663,768	-		GFF2643	0.56	-0.8
2,663,768	-		GFF2643	0.56	-0.8
2,663,768	-		GFF2643	0.56	-2.3
2,663,770	+		GFF2643	0.56	+0.2
2,663,785	+		GFF2643	0.58	+0.5
2,663,788	-		GFF2643	0.58	+0.1
2,663,793	-		GFF2643	0.58	+0.4
2,663,793	-		GFF2643	0.58	-0.0
2,663,810	-		GFF2643	0.60	-0.2
2,663,826	+		GFF2643	0.61	+0.2
2,663,836	+		GFF2643	0.62	+0.0
2,663,836	+		GFF2643	0.62	-0.6
2,663,836	+		GFF2643	0.62	+0.7
2,663,844	-		GFF2643	0.62	-0.5
2,663,844	-		GFF2643	0.62	+0.2
2,663,844	-		GFF2643	0.62	-0.2
2,663,844	-		GFF2643	0.62	-0.1
2,663,853	+		GFF2643	0.63	-0.5
2,663,861	-		GFF2643	0.64	+0.5
2,663,874	+		GFF2643	0.65	+0.5
2,663,874	+		GFF2643	0.65	-2.1
2,663,874	+		GFF2643	0.65	-0.4
2,663,874	+		GFF2643	0.65	-0.2
2,663,882	-		GFF2643	0.66	-0.9
2,663,882	-		GFF2643	0.66	-0.1
2,663,882	-		GFF2643	0.66	-0.2
2,663,882	-		GFF2643	0.66	-2.1
2,663,882	-		GFF2643	0.66	-0.5
2,663,882	-		GFF2643	0.66	-0.9
2,663,882	-		GFF2643	0.66	-0.9
2,663,893	+		GFF2643	0.67	+0.2
2,663,917	+		GFF2643	0.69	-1.8
2,663,925	-		GFF2643	0.69	-0.1
2,663,930	-		GFF2643	0.70	+0.4
2,663,972	+		GFF2643	0.73	+1.1
2,663,973	-		GFF2643	0.73	-1.2
2,664,015	+		GFF2643	0.77	+0.4
2,664,015	+		GFF2643	0.77	-1.4
2,664,016	-		GFF2643	0.77	-0.1
2,664,017	-		GFF2643	0.77	-1.2
2,664,034	+		GFF2643	0.78	-1.8
2,664,057	+		GFF2643	0.80	-0.9
2,664,086	+		GFF2643	0.83	-1.4
2,664,094	-		GFF2643	0.83	-1.8
2,664,136	+		GFF2643	0.87	-0.8
2,664,145	+		GFF2643	0.88	-0.8
2,664,146	+		GFF2643	0.88	-1.0
2,664,154	-		GFF2643	0.88	+0.0
2,664,165	-		GFF2643	0.89	+0.1
2,664,165	-		GFF2643	0.89	-0.9
2,664,165	-		GFF2643	0.89	-0.5
2,664,169	+		GFF2643	0.90	+0.2
2,664,169	+		GFF2643	0.90	+1.4
2,664,169	-		GFF2643	0.90	+0.0
2,664,244	+				+0.1
2,664,256	-				-0.3
2,664,271	+				+1.7
2,664,271	+				-0.5
2,664,271	+				-1.6
2,664,271	+				-1.6
2,664,279	-				-0.6
2,664,279	-				-1.2
2,664,280	+				-1.1
2,664,281	-				-0.6
2,664,316	+				+1.2
2,664,324	-				-1.2
2,664,348	-				-0.5
2,664,348	-				-0.4
2,664,367	+				-1.5
2,664,375	-				-0.2
2,664,375	-				-1.8
2,664,380	+				-1.2
2,664,380	+				-0.5
2,664,380	+				+0.1
2,664,388	-				+0.1
2,664,388	-				+0.2
2,664,388	-				-1.8
2,664,423	+				-0.8
2,664,423	+				+0.2
2,664,447	+				-1.8
2,664,448	+				-1.1
2,664,493	+				-1.5
2,664,511	-				+0.9
2,664,515	+				-3.2
2,664,523	-				+1.2
2,664,546	-		GFF2644	0.12	-1.9
2,664,582	+		GFF2644	0.17	-0.0
2,664,582	+		GFF2644	0.17	+0.2
2,664,589	+		GFF2644	0.18	+0.8
2,664,590	-		GFF2644	0.18	-0.7
2,664,590	-		GFF2644	0.18	-1.8
2,664,590	-		GFF2644	0.18	+1.5
2,664,590	-		GFF2644	0.18	-0.0
2,664,590	-		GFF2644	0.18	-0.7
2,664,592	+		GFF2644	0.18	+0.2
2,664,597	-		GFF2644	0.19	-1.5
2,664,601	+		GFF2644	0.19	-0.6
2,664,607	+		GFF2644	0.20	-2.2
2,664,628	-		GFF2644	0.23	-0.5
2,664,639	+		GFF2644	0.25	-1.8
2,664,654	+		GFF2644	0.27	+0.7
2,664,654	+		GFF2644	0.27	-1.4
2,664,666	+		GFF2644	0.28	+0.2
2,664,668	+		GFF2644	0.29	+0.8
2,664,676	-		GFF2644	0.30	+0.4
2,664,699	+		GFF2644	0.33	+1.0
2,664,707	+		GFF2644	0.34	+0.4
2,664,707	+		GFF2644	0.34	+1.1
2,664,707	-		GFF2644	0.34	+1.1
2,664,709	-		GFF2644	0.34	+0.4
2,664,714	-		GFF2644	0.35	-0.2
2,664,725	+		GFF2644	0.37	-1.9
2,664,725	+		GFF2644	0.37	+1.1
2,664,730	+		GFF2644	0.37	-0.0
2,664,730	+		GFF2644	0.37	-1.4
2,664,733	-		GFF2644	0.38	-1.1
2,664,733	-		GFF2644	0.38	+0.7
2,664,738	-		GFF2644	0.39	+0.8
2,664,738	-		GFF2644	0.39	-0.3
2,664,744	-		GFF2644	0.39	+1.2
2,664,744	-		GFF2644	0.39	-1.8
2,664,744	-		GFF2644	0.39	+1.1
2,664,744	-		GFF2644	0.39	-0.2
2,664,752	+		GFF2644	0.40	+0.6
2,664,791	+		GFF2644	0.46	-1.1
2,664,799	-		GFF2644	0.47	-0.0
2,664,858	+		GFF2644	0.55	-0.6
2,664,858	+		GFF2644	0.55	-0.2
2,664,866	-		GFF2644	0.56	-0.9
2,664,870	-		GFF2644	0.57	-0.9
2,664,915	+		GFF2644	0.63	+1.2
2,664,919	-		GFF2644	0.64	-1.2
2,664,923	-		GFF2644	0.64	+1.1
2,664,936	+		GFF2644	0.66	-0.3
2,664,956	+		GFF2644	0.69	+1.7
2,664,961	+		GFF2644	0.70	-0.4
2,664,974	-		GFF2644	0.72	+0.0
2,665,007	-		GFF2644	0.76	-0.5
2,665,008	+		GFF2644	0.76	-1.8
2,665,018	+		GFF2644	0.78	-2.3
2,665,026	-		GFF2644	0.79	-1.8
2,665,026	-		GFF2644	0.79	+1.1
2,665,034	-		GFF2644	0.80	-0.9
2,665,064	+		GFF2644	0.84	+1.1
2,665,064	+		GFF2644	0.84	-0.2
2,665,069	+		GFF2644	0.85	+0.6
2,665,072	-		GFF2644	0.85	+0.4
2,665,077	-		GFF2644	0.86	+0.0
2,665,077	-		GFF2644	0.86	-2.2
2,665,080	-		GFF2644	0.86	+0.1
2,665,102	+		GFF2644	0.89	+0.7
2,665,129	-				+0.8
2,665,281	-				+0.6
2,665,300	-				-0.2
2,665,304	+				-1.9
2,665,345	+		GFF2645	0.16	+0.3
2,665,345	+		GFF2645	0.16	+0.4
2,665,353	-		GFF2645	0.18	-1.6
2,665,405	-		GFF2645	0.26	-1.5
2,665,412	-		GFF2645	0.27	-2.2
2,665,492	+		GFF2645	0.41	-0.3
2,665,495	-		GFF2645	0.41	+0.2
2,665,533	+		GFF2645	0.48	+0.4
2,665,539	-		GFF2645	0.49	+0.2
2,665,541	-		GFF2645	0.49	+0.7
2,665,551	+		GFF2645	0.51	-0.1
2,665,559	-		GFF2645	0.52	+1.0
2,665,569	+		GFF2645	0.54	-1.7
2,665,581	-		GFF2645	0.56	-0.8
2,665,586	-		GFF2645	0.57	+0.2
2,665,588	+		GFF2645	0.57	-0.1
2,665,590	+		GFF2645	0.57	+0.4
2,665,590	+		GFF2645	0.57	+0.2
2,665,591	-		GFF2645	0.58	-1.2
2,665,591	-		GFF2645	0.58	+0.4
2,665,596	-		GFF2645	0.58	-1.0
2,665,596	-		GFF2645	0.58	-0.8
2,665,598	-		GFF2645	0.59	+1.3
2,665,599	+		GFF2645	0.59	+1.0
2,665,600	+		GFF2645	0.59	-0.0
2,665,647	+		GFF2645	0.67	+0.6
2,665,648	-		GFF2645	0.67	-0.5
2,665,648	-		GFF2645	0.67	-0.1
2,665,648	-		GFF2645	0.67	-0.1
2,665,655	-		GFF2645	0.68	-0.4
2,665,665	+		GFF2645	0.70	-0.9
2,665,666	+		GFF2645	0.70	-0.2
2,665,673	-		GFF2645	0.71	+1.2
2,665,683	-		GFF2645	0.73	+1.2
2,665,689	-		GFF2645	0.74	-0.2
2,665,690	-		GFF2645	0.74	+0.4
2,665,690	-		GFF2645	0.74	-0.3
2,665,691	+		GFF2645	0.74	+1.0
2,665,701	+		GFF2645	0.76	-1.3
2,665,718	+		GFF2645	0.79	-1.2
2,665,736	+		GFF2645	0.82	-0.9
2,665,736	+		GFF2645	0.82	-0.1
2,665,746	+		GFF2645	0.84	-1.1
2,665,808	+				-2.1
2,665,811	-				+0.2
2,665,825	+				-1.6
2,665,830	+				-0.4
2,665,830	+				-0.3
2,665,830	+				-1.4
2,665,830	+				+1.3
2,665,831	+				+0.6
2,665,831	+				-0.3
2,665,831	+				+0.7
2,665,831	+				+1.9
2,665,831	+				-1.0
2,665,831	+				-0.7
2,665,831	+				+1.0
2,665,831	+				-0.3
2,665,833	-				-0.6
2,665,833	-				-0.2
2,665,833	-				+0.3
2,665,836	+				-0.5
2,665,836	+				-0.0
2,665,836	+				-1.4
2,665,836	+				-1.7
2,665,836	+				-0.8
2,665,839	-				-1.3
2,665,839	-				+0.7
2,665,839	-				+0.4
2,665,839	-				+1.0
2,665,839	-				+0.7
2,665,839	-				+0.3
2,665,839	-				-2.2
2,665,839	-				+0.3
2,665,844	-				+1.4
2,665,844	-				+0.9
2,665,844	-				-1.6
2,665,844	-				-0.3
2,665,844	-				-2.1
2,665,844	-				+0.7
2,665,844	-				+0.9
2,665,844	-				+0.0
2,665,847	+				-0.3
2,665,868	-				+0.1
2,665,868	-				+0.2
2,665,915	+				-1.3
2,665,915	+				-1.5
2,665,917	+				+0.9
2,665,917	+				+0.0
2,665,923	-				+0.0
2,665,923	-				+1.0
2,665,923	-				-0.5
2,665,937	+				-0.2
2,665,937	+				-1.5
2,665,937	+				+0.1
2,665,945	-		GFF2646	0.10	-1.1
2,665,945	-		GFF2646	0.10	+0.2
2,665,945	-		GFF2646	0.10	+0.0
2,665,951	-		GFF2646	0.11	+0.0
2,665,951	-		GFF2646	0.11	+0.0
2,665,951	-		GFF2646	0.11	-2.9
2,666,009	+		GFF2646	0.17	+0.7
2,666,037	+		GFF2646	0.19	+0.7
2,666,046	+		GFF2646	0.20	+0.5
2,666,082	-		GFF2646	0.24	+0.8
2,666,085	+		GFF2646	0.24	+0.1
2,666,090	+		GFF2646	0.25	+0.7
2,666,098	-		GFF2646	0.26	-0.3
2,666,114	+		GFF2646	0.27	-1.3
2,666,117	-		GFF2646	0.28	-0.3
2,666,148	-		GFF2646	0.31	-2.2
2,666,151	+		GFF2646	0.31	-1.6
2,666,160	-		GFF2646	0.32	-0.1
2,666,176	+		GFF2646	0.34	-0.1