Strain Fitness in Sphingobium sp. HT1-2 around GFF2612

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,632,852	-		GFF2611	0.20	-0.3
2,632,865	+		GFF2611	0.21	+0.8
2,632,865	+		GFF2611	0.21	+0.5
2,632,873	-		GFF2611	0.21	-0.3
2,632,873	-		GFF2611	0.21	-1.4
2,632,873	-		GFF2611	0.21	-0.6
2,632,873	-		GFF2611	0.21	+1.3
2,632,873	-		GFF2611	0.21	-0.7
2,632,873	-		GFF2611	0.21	+0.2
2,632,890	-		GFF2611	0.23	+0.1
2,632,915	-		GFF2611	0.25	-1.8
2,632,924	+		GFF2611	0.26	-0.9
2,632,926	+		GFF2611	0.26	-0.9
2,632,926	+		GFF2611	0.26	+0.7
2,632,931	+		GFF2611	0.26	-0.1
2,632,931	+		GFF2611	0.26	+0.8
2,632,932	+		GFF2611	0.26	-0.9
2,632,934	-		GFF2611	0.26	-0.2
2,632,934	-		GFF2611	0.26	+0.1
2,632,972	+		GFF2611	0.29	+0.7
2,632,972	+		GFF2611	0.29	-2.0
2,632,972	+		GFF2611	0.29	-0.1
2,632,972	+		GFF2611	0.29	-0.7
2,632,980	+		GFF2611	0.30	+0.1
2,632,980	-		GFF2611	0.30	-1.0
2,632,980	-		GFF2611	0.30	-0.8
2,632,980	-		GFF2611	0.30	+0.7
2,632,980	-		GFF2611	0.30	+0.0
2,632,980	-		GFF2611	0.30	-1.6
2,632,993	-		GFF2611	0.31	+0.5
2,633,001	+		GFF2611	0.32	-1.3
2,633,009	-		GFF2611	0.32	+0.5
2,633,014	-		GFF2611	0.33	-0.0
2,633,014	-		GFF2611	0.33	+0.5
2,633,040	-		GFF2611	0.35	-0.2
2,633,062	-		GFF2611	0.37	-0.6
2,633,081	-		GFF2611	0.38	-1.7
2,633,081	-		GFF2611	0.38	-0.8
2,633,082	+		GFF2611	0.38	-0.8
2,633,092	+		GFF2611	0.39	+1.0
2,633,100	-		GFF2611	0.40	-0.8
2,633,107	+		GFF2611	0.40	-0.5
2,633,112	+		GFF2611	0.41	+0.1
2,633,120	-		GFF2611	0.41	-1.3
2,633,132	-		GFF2611	0.42	-0.3
2,633,134	+		GFF2611	0.42	+0.0
2,633,134	+		GFF2611	0.42	-2.5
2,633,141	+		GFF2611	0.43	+1.0
2,633,158	+		GFF2611	0.44	-1.8
2,633,158	+		GFF2611	0.44	+0.8
2,633,166	-		GFF2611	0.45	-0.2
2,633,166	-		GFF2611	0.45	+0.8
2,633,166	-		GFF2611	0.45	-1.9
2,633,166	-		GFF2611	0.45	+0.1
2,633,166	-		GFF2611	0.45	-1.6
2,633,166	-		GFF2611	0.45	+1.1
2,633,166	-		GFF2611	0.45	-1.2
2,633,166	-		GFF2611	0.45	+0.2
2,633,166	-		GFF2611	0.45	-1.0
2,633,172	-		GFF2611	0.45	-1.7
2,633,190	+		GFF2611	0.47	-1.5
2,633,206	+		GFF2611	0.48	-1.2
2,633,208	-		GFF2611	0.48	+1.2
2,633,208	-		GFF2611	0.48	-1.6
2,633,209	-		GFF2611	0.48	-1.7
2,633,209	-		GFF2611	0.48	+0.3
2,633,241	-		GFF2611	0.51	-1.1
2,633,286	+		GFF2611	0.55	-0.8
2,633,286	+		GFF2611	0.55	-0.4
2,633,286	+		GFF2611	0.55	+1.6
2,633,301	-		GFF2611	0.56	+0.1
2,633,329	+		GFF2611	0.58	-1.6
2,633,346	+		GFF2611	0.60	-0.7
2,633,347	+		GFF2611	0.60	+0.1
2,633,351	+		GFF2611	0.60	-0.9
2,633,380	-		GFF2611	0.62	+0.7
2,633,390	+		GFF2611	0.63	+0.1
2,633,395	+		GFF2611	0.63	+0.3
2,633,414	-		GFF2611	0.65	+0.5
2,633,432	-		GFF2611	0.66	+0.6
2,633,436	+		GFF2611	0.67	-1.3
2,633,479	-		GFF2611	0.70	-0.3
2,633,484	+		GFF2611	0.71	-0.7
2,633,485	-		GFF2611	0.71	-0.2
2,633,492	-		GFF2611	0.71	-0.7
2,633,507	-		GFF2611	0.72	-0.7
2,633,510	+		GFF2611	0.73	-0.2
2,633,511	+		GFF2611	0.73	-0.6
2,633,515	-		GFF2611	0.73	+0.5
2,633,519	-		GFF2611	0.73	+1.4
2,633,528	-		GFF2611	0.74	+1.2
2,633,536	-		GFF2611	0.75	+0.1
2,633,538	+		GFF2611	0.75	+0.4
2,633,564	-		GFF2611	0.77	-1.6
2,633,596	+		GFF2611	0.80	+0.4
2,633,596	+		GFF2611	0.80	-2.4
2,633,596	+		GFF2611	0.80	+0.8
2,633,596	+		GFF2611	0.80	-1.2
2,633,604	-		GFF2611	0.80	-1.1
2,633,604	-		GFF2611	0.80	-0.6
2,633,604	-		GFF2611	0.80	-0.9
2,633,604	-		GFF2611	0.80	-0.5
2,633,676	+		GFF2611	0.86	-1.3
2,633,676	+		GFF2611	0.86	+0.9
2,633,676	+		GFF2611	0.86	-1.0
2,633,684	-		GFF2611	0.87	+0.3
2,633,684	-		GFF2611	0.87	+0.8
2,633,684	-		GFF2611	0.87	+0.8
2,633,685	+		GFF2611	0.87	+0.9
2,633,702	+		GFF2611	0.88	+0.4
2,633,702	+		GFF2611	0.88	-0.8
2,633,702	+		GFF2611	0.88	+0.2
2,633,702	+		GFF2611	0.88	-1.3
2,633,702	+		GFF2611	0.88	-2.9
2,633,702	+		GFF2611	0.88	+0.7
2,633,702	+		GFF2611	0.88	-1.5
2,633,707	+		GFF2611	0.89	+0.8
2,633,710	-		GFF2611	0.89	-0.5
2,633,710	-		GFF2611	0.89	-0.3
2,633,710	-		GFF2611	0.89	-2.0
2,633,710	-		GFF2611	0.89	-1.0
2,633,710	-		GFF2611	0.89	+0.6
2,633,710	-		GFF2611	0.89	+0.9
2,633,710	-		GFF2611	0.89	-2.7
2,633,715	-		GFF2611	0.89	-1.6
2,633,715	-		GFF2611	0.89	-1.3
2,633,774	-				-0.7
2,633,798	-				+1.4
2,633,810	+				-0.0
2,633,810	+				-1.6
2,633,818	-				+0.4
2,633,818	-				-1.5
2,633,829	+				-1.7
2,633,830	+				+0.1
2,633,830	+				-1.2
2,633,830	+				-0.8
2,633,830	+				+0.8
2,633,830	+				-0.6
2,633,836	+				+0.0
2,633,838	-				-2.2
2,633,838	-				+0.3
2,633,838	-				+0.3
2,633,838	-				-0.7
2,633,838	-				-1.4
2,633,838	-				-0.1
2,633,838	-				-0.7
2,633,848	+				-0.4
2,633,851	-				-0.3
2,633,851	-				-2.5
2,633,871	+				+0.2
2,633,876	+				+0.4
2,633,879	-				-0.1
2,633,879	-				-1.3
2,633,879	-				+1.0
2,633,884	-				+0.7
2,633,902	+				+0.7
2,633,922	+				-0.4
2,633,959	-		GFF2612	0.11	-0.2
2,633,997	+		GFF2612	0.15	+0.2
2,634,000	-		GFF2612	0.15	+0.2
2,634,005	-		GFF2612	0.16	+0.6
2,634,085	+		GFF2612	0.24	-1.9
2,634,098	+		GFF2612	0.25	+0.7
2,634,134	+		GFF2612	0.29	+1.2
2,634,137	-		GFF2612	0.29	+1.3
2,634,137	-		GFF2612	0.29	-0.6
2,634,137	-		GFF2612	0.29	+0.6
2,634,142	-		GFF2612	0.30	-0.5
2,634,142	-		GFF2612	0.30	+1.2
2,634,158	+		GFF2612	0.31	-0.2
2,634,183	-		GFF2612	0.34	+0.7
2,634,215	+		GFF2612	0.37	-0.7
2,634,222	+		GFF2612	0.38	+0.1
2,634,232	+		GFF2612	0.39	-0.5
2,634,232	+		GFF2612	0.39	-2.0
2,634,232	+		GFF2612	0.39	-0.6
2,634,240	-		GFF2612	0.39	-0.7
2,634,240	-		GFF2612	0.39	+0.2
2,634,240	-		GFF2612	0.39	-1.2
2,634,240	-		GFF2612	0.39	-1.0
2,634,268	+		GFF2612	0.42	+0.3
2,634,275	+		GFF2612	0.43	-0.6
2,634,275	+		GFF2612	0.43	+1.3
2,634,275	+		GFF2612	0.43	-1.5
2,634,275	+		GFF2612	0.43	+0.2
2,634,283	-		GFF2612	0.44	-0.8
2,634,283	-		GFF2612	0.44	-0.3
2,634,283	-		GFF2612	0.44	+0.2
2,634,283	-		GFF2612	0.44	+0.3
2,634,285	+		GFF2612	0.44	+0.2
2,634,285	+		GFF2612	0.44	-0.9
2,634,285	+		GFF2612	0.44	+0.5
2,634,293	-		GFF2612	0.45	+0.7
2,634,294	+		GFF2612	0.45	-0.6
2,634,304	+		GFF2612	0.46	-2.5
2,634,312	+		GFF2612	0.46	+0.8
2,634,312	-		GFF2612	0.46	-0.6
2,634,312	-		GFF2612	0.46	-1.8
2,634,317	+		GFF2612	0.47	+1.0
2,634,323	+		GFF2612	0.48	-1.2
2,634,348	-		GFF2612	0.50	-1.2
2,634,354	-		GFF2612	0.51	-0.8
2,634,369	-		GFF2612	0.52	+0.3
2,634,369	-		GFF2612	0.52	+0.4
2,634,381	+		GFF2612	0.53	-1.2
2,634,398	+		GFF2612	0.55	-1.7
2,634,398	+		GFF2612	0.55	-1.2
2,634,398	+		GFF2612	0.55	+2.0
2,634,401	+		GFF2612	0.55	-0.1
2,634,406	-		GFF2612	0.56	-1.9
2,634,406	-		GFF2612	0.56	+1.2
2,634,406	-		GFF2612	0.56	-0.2
2,634,408	+		GFF2612	0.56	-2.1
2,634,408	-		GFF2612	0.56	+0.5
2,634,410	+		GFF2612	0.56	-0.3
2,634,433	+		GFF2612	0.59	-1.8
2,634,436	+		GFF2612	0.59	+0.6
2,634,463	-		GFF2612	0.61	-0.2
2,634,463	-		GFF2612	0.61	+0.9
2,634,466	+		GFF2612	0.62	+1.4
2,634,466	+		GFF2612	0.62	+0.1
2,634,467	+		GFF2612	0.62	+0.0
2,634,472	-		GFF2612	0.62	-0.2
2,634,472	-		GFF2612	0.62	+0.4
2,634,475	+		GFF2612	0.63	+1.8
2,634,475	-		GFF2612	0.63	+0.0
2,634,483	+		GFF2612	0.63	-0.2
2,634,483	+		GFF2612	0.63	+0.5
2,634,483	+		GFF2612	0.63	+0.5
2,634,490	+		GFF2612	0.64	-0.9
2,634,490	+		GFF2612	0.64	-0.3
2,634,490	+		GFF2612	0.64	+0.6
2,634,491	-		GFF2612	0.64	-0.1
2,634,493	-		GFF2612	0.64	-1.5
2,634,498	-		GFF2612	0.65	-1.4
2,634,498	-		GFF2612	0.65	+1.9
2,634,498	-		GFF2612	0.65	+0.7
2,634,498	-		GFF2612	0.65	+0.7
2,634,500	-		GFF2612	0.65	-0.3
2,634,502	+		GFF2612	0.65	-0.1
2,634,502	+		GFF2612	0.65	-0.6
2,634,502	+		GFF2612	0.65	-0.3
2,634,510	-		GFF2612	0.66	-1.7
2,634,562	+		GFF2612	0.71	+0.1
2,634,580	-		GFF2612	0.73	+0.3
2,634,588	+		GFF2612	0.74	-0.7
2,634,596	-		GFF2612	0.75	+1.3
2,634,617	-		GFF2612	0.77	-0.6
2,634,646	+		GFF2612	0.80	+0.0
2,634,646	+		GFF2612	0.80	-1.0
2,634,646	+		GFF2612	0.80	-0.3
2,634,646	-		GFF2612	0.80	-0.3
2,634,654	-		GFF2612	0.80	-1.7
2,634,654	-		GFF2612	0.80	+0.8
2,634,654	-		GFF2612	0.80	+0.4
2,634,655	+		GFF2612	0.81	+1.4
2,634,667	+		GFF2612	0.82	-1.3
2,634,668	+		GFF2612	0.82	+0.9
2,634,668	-		GFF2612	0.82	-1.2
2,634,669	-		GFF2612	0.82	+0.1
2,634,676	-		GFF2612	0.83	-0.0
2,634,681	+		GFF2612	0.83	-0.2
2,634,681	+		GFF2612	0.83	-0.1
2,634,681	+		GFF2612	0.83	-0.9
2,634,681	+		GFF2612	0.83	-1.0
2,634,681	+		GFF2612	0.83	+0.3
2,634,681	+		GFF2612	0.83	-2.2
2,634,681	+		GFF2612	0.83	+0.8
2,634,684	-		GFF2612	0.83	-0.0
2,634,689	-		GFF2612	0.84	+0.2
2,634,689	-		GFF2612	0.84	+1.6
2,634,699	+		GFF2612	0.85	-0.2
2,634,702	-		GFF2612	0.85	+2.2
2,634,709	+		GFF2612	0.86	+1.0
2,634,733	+		GFF2612	0.88	-0.5
2,634,736	-		GFF2612	0.89	-1.2
2,634,738	+		GFF2612	0.89	+1.3
2,634,738	+		GFF2612	0.89	-0.1
2,634,738	+		GFF2612	0.89	-2.8
2,634,738	+		GFF2612	0.89	+0.2
2,634,738	+		GFF2612	0.89	-0.0
2,634,738	+		GFF2612	0.89	-0.3
2,634,738	+		GFF2612	0.89	+0.3
2,634,738	+		GFF2612	0.89	+1.2
2,634,738	+		GFF2612	0.89	-2.7
2,634,738	+		GFF2612	0.89	-0.0
2,634,738	+		GFF2612	0.89	-1.3
2,634,741	-		GFF2612	0.89	+0.8
2,634,746	-		GFF2612	0.90	-1.2
2,634,746	-		GFF2612	0.90	-1.6
2,634,746	-		GFF2612	0.90	+0.0
2,634,746	-		GFF2612	0.90	-0.3
2,634,746	-		GFF2612	0.90	-0.7
2,634,746	-		GFF2612	0.90	+0.4
2,634,746	-		GFF2612	0.90	+0.0
2,634,746	-		GFF2612	0.90	-0.8
2,634,746	-		GFF2612	0.90	-0.2
2,634,746	-		GFF2612	0.90	-0.8
2,634,746	-		GFF2612	0.90	-1.0
2,634,746	-		GFF2612	0.90	-1.2
2,634,746	-		GFF2612	0.90	-0.2
2,634,746	-		GFF2612	0.90	-1.9
2,634,746	-		GFF2612	0.90	-0.3
2,634,746	-		GFF2612	0.90	-0.4
2,634,746	-		GFF2612	0.90	-0.6
2,634,746	-		GFF2612	0.90	+0.5
2,634,746	-		GFF2612	0.90	-1.2
2,634,760	+				-0.5
2,634,770	+				-0.8
2,634,770	+				-0.8
2,634,770	+				+0.7
2,634,770	+				-0.8
2,634,778	-				-1.1
2,634,778	-				-0.3
2,634,786	+				+1.3
2,634,786	+				+0.5
2,634,786	+				+1.1
2,634,805	-				-1.2
2,634,810	-				-0.5
2,634,849	+				-0.2
2,634,853	+				-0.8
2,635,323	-		GFF2613	0.85	-0.8
2,635,352	-		GFF2613	0.90	-1.2
2,635,459	+				-2.1
2,635,467	+				-1.7
2,635,467	-				-0.1
2,635,467	-				-0.2
2,635,469	+				-0.6
2,635,469	+				+0.2
2,635,469	+				-1.3
2,635,471	-				+1.0
2,635,477	-				-0.7
2,635,477	-				+1.7
2,635,477	-				-0.5
2,635,477	-				+0.4
2,635,477	-				-0.0
2,635,499	-				-0.6
2,635,524	-		GFF2614	0.11	+0.0
2,635,525	-		GFF2614	0.11	+1.4
2,635,547	-		GFF2614	0.14	+1.1
2,635,561	-		GFF2614	0.15	-0.4
2,635,605	+		GFF2614	0.19	-1.7
2,635,605	+		GFF2614	0.19	+0.6
2,635,607	+		GFF2614	0.19	-2.1
2,635,615	-		GFF2614	0.20	+0.1
2,635,622	+		GFF2614	0.21	-1.2
2,635,622	+		GFF2614	0.21	-0.3
2,635,630	-		GFF2614	0.21	-1.2
2,635,650	+		GFF2614	0.23	-0.3
2,635,658	-		GFF2614	0.24	-0.4
2,635,698	+		GFF2614	0.28	-1.0
2,635,709	+		GFF2614	0.29	-0.9
2,635,718	+		GFF2614	0.30	+0.7
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