Strain Fitness in Sphingobium sp. HT1-2 around GFF2566

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,581,419	+		GFF2565	0.19	+0.3
2,581,419	+		GFF2565	0.19	-1.8
2,581,419	+		GFF2565	0.19	+0.6
2,581,427	-		GFF2565	0.19	+0.4
2,581,427	-		GFF2565	0.19	+0.5
2,581,451	+		GFF2565	0.21	-2.2
2,581,465	+		GFF2565	0.23	+0.7
2,581,466	+		GFF2565	0.23	+0.7
2,581,470	+		GFF2565	0.23	-0.7
2,581,470	+		GFF2565	0.23	+0.0
2,581,470	+		GFF2565	0.23	-1.3
2,581,470	+		GFF2565	0.23	-1.1
2,581,478	-		GFF2565	0.24	-0.5
2,581,490	+		GFF2565	0.25	-2.0
2,581,514	-		GFF2565	0.27	-1.3
2,581,570	+		GFF2565	0.31	-0.7
2,581,570	+		GFF2565	0.31	-0.4
2,581,578	-		GFF2565	0.32	-0.6
2,581,578	-		GFF2565	0.32	-0.7
2,581,578	-		GFF2565	0.32	+0.2
2,581,625	-		GFF2565	0.36	-2.7
2,581,634	+		GFF2565	0.37	+2.0
2,581,634	+		GFF2565	0.37	-1.2
2,581,642	-		GFF2565	0.38	-1.3
2,581,642	-		GFF2565	0.38	-2.2
2,581,644	-		GFF2565	0.38	-1.6
2,581,647	+		GFF2565	0.38	+2.3
2,581,649	+		GFF2565	0.38	+1.1
2,581,649	+		GFF2565	0.38	-0.1
2,581,655	-		GFF2565	0.39	+0.4
2,581,657	-		GFF2565	0.39	-0.7
2,581,670	+		GFF2565	0.40	-1.5
2,581,673	-		GFF2565	0.40	-0.8
2,581,673	-		GFF2565	0.40	-1.0
2,581,675	+		GFF2565	0.40	-0.6
2,581,675	+		GFF2565	0.40	-1.8
2,581,678	-		GFF2565	0.41	-0.0
2,581,680	+		GFF2565	0.41	-0.9
2,581,757	-		GFF2565	0.47	+0.1
2,581,768	+		GFF2565	0.48	+0.4
2,581,771	-		GFF2565	0.49	-0.3
2,581,790	+		GFF2565	0.50	+0.4
2,581,812	+		GFF2565	0.52	+0.2
2,581,822	+		GFF2565	0.53	-0.8
2,581,822	+		GFF2565	0.53	+0.3
2,581,825	-		GFF2565	0.53	-0.5
2,581,826	-		GFF2565	0.53	+0.1
2,581,833	+		GFF2565	0.54	-0.2
2,581,837	-		GFF2565	0.54	-0.1
2,581,838	+		GFF2565	0.54	+0.6
2,581,848	+		GFF2565	0.55	-1.2
2,581,848	+		GFF2565	0.55	-2.0
2,581,848	+		GFF2565	0.55	-0.3
2,581,856	-		GFF2565	0.56	+0.8
2,581,856	-		GFF2565	0.56	-0.9
2,581,868	+		GFF2565	0.57	-1.8
2,581,878	-		GFF2565	0.58	-0.3
2,581,887	+		GFF2565	0.58	-0.5
2,581,887	+		GFF2565	0.58	-0.0
2,581,895	-		GFF2565	0.59	-0.9
2,581,895	-		GFF2565	0.59	-0.8
2,581,939	+		GFF2565	0.63	+0.8
2,581,939	-		GFF2565	0.63	-2.2
2,581,947	-		GFF2565	0.63	-0.9
2,581,961	-		GFF2565	0.65	+0.5
2,582,000	+		GFF2565	0.68	-1.2
2,582,008	-		GFF2565	0.69	-1.2
2,582,016	+		GFF2565	0.69	-0.2
2,582,019	+		GFF2565	0.70	-0.9
2,582,023	+		GFF2565	0.70	+0.7
2,582,031	+		GFF2565	0.71	-1.8
2,582,034	+		GFF2565	0.71	+0.6
2,582,048	-		GFF2565	0.72	-0.3
2,582,067	-		GFF2565	0.74	-0.3
2,582,083	-		GFF2565	0.75	-0.6
2,582,088	-		GFF2565	0.75	+1.2
2,582,102	+		GFF2565	0.77	-2.4
2,582,102	+		GFF2565	0.77	-0.8
2,582,107	+		GFF2565	0.77	-1.8
2,582,108	-		GFF2565	0.77	-0.0
2,582,110	-		GFF2565	0.77	+0.7
2,582,110	-		GFF2565	0.77	-0.2
2,582,110	-		GFF2565	0.77	-2.0
2,582,110	-		GFF2565	0.77	-1.0
2,582,112	+		GFF2565	0.77	-0.2
2,582,112	+		GFF2565	0.77	-1.0
2,582,120	-		GFF2565	0.78	-0.8
2,582,120	-		GFF2565	0.78	-0.2
2,582,120	-		GFF2565	0.78	-0.3
2,582,120	-		GFF2565	0.78	-0.1
2,582,120	-		GFF2565	0.78	-0.8
2,582,121	+		GFF2565	0.78	+0.1
2,582,121	+		GFF2565	0.78	+0.2
2,582,129	-		GFF2565	0.79	+0.0
2,582,136	-		GFF2565	0.79	+1.5
2,582,155	+		GFF2565	0.81	-1.4
2,582,155	+		GFF2565	0.81	+0.2
2,582,181	-		GFF2565	0.83	+1.5
2,582,211	-		GFF2565	0.86	-0.2
2,582,279	+				+0.6
2,582,281	+				+1.0
2,582,284	-				-1.1
2,582,331	+				+1.0
2,582,354	-				-0.8
2,582,376	+				+0.5
2,582,381	+				-2.4
2,582,396	+				-0.6
2,582,400	-				-0.3
2,582,401	+				+0.8
2,582,404	-				-0.0
2,582,414	-				-0.0
2,582,445	-				-0.3
2,582,449	+				-1.2
2,582,449	-				-1.1
2,582,473	+		GFF2566	0.12	-1.0
2,582,473	+		GFF2566	0.12	-0.0
2,582,473	+		GFF2566	0.12	-2.1
2,582,474	-		GFF2566	0.13	-1.5
2,582,481	-		GFF2566	0.14	+0.3
2,582,514	-		GFF2566	0.18	-1.3
2,582,525	+		GFF2566	0.19	-2.4
2,582,525	+		GFF2566	0.19	+0.7
2,582,525	+		GFF2566	0.19	-0.6
2,582,527	+		GFF2566	0.19	-0.2
2,582,533	-		GFF2566	0.20	-2.1
2,582,539	-		GFF2566	0.21	-1.8
2,582,541	-		GFF2566	0.21	-0.2
2,582,543	-		GFF2566	0.21	-2.2
2,582,551	+		GFF2566	0.22	-0.1
2,582,556	+		GFF2566	0.23	-1.6
2,582,563	+		GFF2566	0.24	-0.8
2,582,564	+		GFF2566	0.24	-1.1
2,582,564	+		GFF2566	0.24	-2.0
2,582,564	+		GFF2566	0.24	-2.0
2,582,564	+		GFF2566	0.24	-0.8
2,582,564	+		GFF2566	0.24	-1.0
2,582,564	-		GFF2566	0.24	+1.0
2,582,572	-		GFF2566	0.25	+0.7
2,582,572	-		GFF2566	0.25	-0.6
2,582,572	-		GFF2566	0.25	+0.8
2,582,572	-		GFF2566	0.25	-1.5
2,582,572	-		GFF2566	0.25	-1.3
2,582,572	-		GFF2566	0.25	-0.6
2,582,572	-		GFF2566	0.25	+0.2
2,582,572	-		GFF2566	0.25	+0.8
2,582,574	+		GFF2566	0.25	-0.1
2,582,574	+		GFF2566	0.25	-0.7
2,582,574	+		GFF2566	0.25	-1.3
2,582,574	+		GFF2566	0.25	-0.7
2,582,574	+		GFF2566	0.25	-0.0
2,582,574	+		GFF2566	0.25	-1.6
2,582,574	+		GFF2566	0.25	+0.7
2,582,574	+		GFF2566	0.25	+0.7
2,582,574	+		GFF2566	0.25	+0.0
2,582,577	-		GFF2566	0.26	-1.8
2,582,579	+		GFF2566	0.26	+0.4
2,582,579	+		GFF2566	0.26	-1.8
2,582,582	-		GFF2566	0.26	-0.1
2,582,582	-		GFF2566	0.26	-2.7
2,582,582	-		GFF2566	0.26	+0.3
2,582,582	-		GFF2566	0.26	-0.9
2,582,582	-		GFF2566	0.26	+0.5
2,582,582	-		GFF2566	0.26	+0.4
2,582,582	-		GFF2566	0.26	-0.5
2,582,587	-		GFF2566	0.27	-0.5
2,582,587	-		GFF2566	0.27	-1.5
2,582,620	+		GFF2566	0.31	+0.6
2,582,628	-		GFF2566	0.32	-0.7
2,582,638	-		GFF2566	0.33	+0.8
2,582,717	+		GFF2566	0.43	-0.6
2,582,724	+		GFF2566	0.44	-0.6
2,582,725	-		GFF2566	0.44	-0.3
2,582,732	-		GFF2566	0.45	-2.7
2,582,734	+		GFF2566	0.45	-0.8
2,582,742	-		GFF2566	0.46	+0.8
2,582,744	-		GFF2566	0.47	+1.4
2,582,752	-		GFF2566	0.48	+0.7
2,582,781	-		GFF2566	0.51	+0.1
2,582,783	-		GFF2566	0.52	-1.7
2,582,783	-		GFF2566	0.52	-0.5
2,582,789	+		GFF2566	0.52	+1.7
2,582,789	+		GFF2566	0.52	-0.4
2,582,804	+		GFF2566	0.54	-0.2
2,582,830	+		GFF2566	0.58	-0.3
2,582,832	+		GFF2566	0.58	-0.4
2,582,832	+		GFF2566	0.58	+0.7
2,582,838	-		GFF2566	0.59	+0.1
2,582,838	-		GFF2566	0.59	-0.7
2,582,840	-		GFF2566	0.59	-0.4
2,582,840	-		GFF2566	0.59	-1.8
2,582,863	+		GFF2566	0.62	+2.4
2,582,871	-		GFF2566	0.63	+1.0
2,582,881	-		GFF2566	0.64	-0.9
2,582,886	-		GFF2566	0.65	+0.2
2,582,914	-		GFF2566	0.68	-0.5
2,582,943	+		GFF2566	0.72	+1.5
2,582,943	+		GFF2566	0.72	+0.7
2,582,944	+		GFF2566	0.72	+0.0
2,582,944	+		GFF2566	0.72	+1.6
2,582,944	+		GFF2566	0.72	-0.8
2,582,947	-		GFF2566	0.72	+0.4
2,582,952	-		GFF2566	0.73	-0.7
2,582,952	-		GFF2566	0.73	-1.7
2,583,002	+		GFF2566	0.79	-1.3
2,583,010	-		GFF2566	0.80	-1.7
2,583,012	+		GFF2566	0.81	-1.3
2,583,021	-		GFF2566	0.82	+1.4
2,583,023	-		GFF2566	0.82	-0.4
2,583,038	-		GFF2566	0.84	+0.3
2,583,046	+		GFF2566	0.85	-0.7
2,583,048	-		GFF2566	0.85	-0.3
2,583,054	+		GFF2566	0.86	-0.4
2,583,062	+		GFF2566	0.87	-0.1
2,583,062	+		GFF2566	0.87	+0.1
2,583,062	+		GFF2566	0.87	-1.1
2,583,064	+		GFF2566	0.87	-1.1
2,583,070	-		GFF2566	0.88	+0.2
2,583,070	-		GFF2566	0.88	+0.4
2,583,070	-		GFF2566	0.88	+0.5
2,583,070	-		GFF2566	0.88	-1.0
2,583,080	+		GFF2566	0.89	+0.5
2,583,086	+				-1.6
2,583,086	+				-1.3
2,583,094	-				+0.1
2,583,094	-				+1.4
2,583,096	-				-0.9
2,583,112	+				-2.2
2,583,147	+				-0.0
2,583,155	-				-0.4
2,583,155	-				-2.1
2,583,160	-				-0.7
2,583,187	-				-1.2
2,583,189	-				-0.6
2,583,191	-				-0.3
2,583,208	-				+0.2
2,583,235	+				-1.3
2,583,245	+				+0.5
2,583,264	+				-0.1
2,583,264	+				+1.0
2,583,269	+				-0.8
2,583,269	+				-0.9
2,583,272	-				+0.2
2,583,272	-				-1.8
2,583,272	-				+1.1
2,583,272	-				-1.7
2,583,277	-				-0.1
2,583,277	-				+1.1
2,583,277	-				-1.3
2,583,282	-				-0.7
2,583,320	+				-1.3
2,583,328	-				-1.2
2,583,343	+				+0.3
2,583,343	+				-0.9
2,583,343	+				-0.3
2,583,345	+				-1.7
2,583,345	+				-0.4
2,583,345	+				-1.6
2,583,345	+				+0.5
2,583,345	+				-0.5
2,583,345	+				-0.2
2,583,345	+				-0.5
2,583,345	+				-0.7
2,583,345	+				+0.5
2,583,345	+				-1.2
2,583,345	+				-1.8
2,583,349	+		GFF2567	0.10	-2.3
2,583,351	-		GFF2567	0.10	-0.9
2,583,351	-		GFF2567	0.10	-0.9
2,583,353	-		GFF2567	0.11	-0.6
2,583,353	-		GFF2567	0.11	+0.2
2,583,353	-		GFF2567	0.11	-1.9
2,583,353	-		GFF2567	0.11	+0.7
2,583,353	-		GFF2567	0.11	-0.7
2,583,353	-		GFF2567	0.11	+0.3
2,583,353	-		GFF2567	0.11	+0.0
2,583,353	-		GFF2567	0.11	-0.1
2,583,353	-		GFF2567	0.11	-2.1
2,583,353	-		GFF2567	0.11	-0.9
2,583,353	-		GFF2567	0.11	-1.1
2,583,353	-		GFF2567	0.11	-0.3
2,583,353	-		GFF2567	0.11	+0.2
2,583,353	-		GFF2567	0.11	-1.2
2,583,353	-		GFF2567	0.11	-1.6
2,583,355	+		GFF2567	0.11	+0.0
2,583,363	-		GFF2567	0.12	-2.2
2,583,363	-		GFF2567	0.12	-0.3
2,583,397	-		GFF2567	0.16	-0.3
2,583,399	+		GFF2567	0.16	-1.8
2,583,407	-		GFF2567	0.17	-1.2
2,583,407	-		GFF2567	0.17	-0.6
2,583,425	+		GFF2567	0.19	-1.5
2,583,431	+		GFF2567	0.20	-1.6
2,583,433	-		GFF2567	0.20	+0.9
2,583,448	-		GFF2567	0.22	+0.2
2,583,449	+		GFF2567	0.22	-0.5
2,583,459	+		GFF2567	0.23	-2.0
2,583,459	+		GFF2567	0.23	-2.7
2,583,459	+		GFF2567	0.23	+0.2
2,583,463	+		GFF2567	0.23	+1.4
2,583,468	+		GFF2567	0.24	+0.1
2,583,468	+		GFF2567	0.24	+0.3
2,583,471	-		GFF2567	0.24	-1.3
2,583,472	-		GFF2567	0.24	-1.2
2,583,498	-		GFF2567	0.27	-1.8
2,583,500	+		GFF2567	0.28	+0.3
2,583,500	+		GFF2567	0.28	-0.2
2,583,500	+		GFF2567	0.28	-2.1
2,583,500	+		GFF2567	0.28	-0.6
2,583,500	+		GFF2567	0.28	-1.5
2,583,500	+		GFF2567	0.28	+1.7
2,583,500	+		GFF2567	0.28	-1.0
2,583,500	+		GFF2567	0.28	-1.6
2,583,500	+		GFF2567	0.28	+0.5
2,583,508	-		GFF2567	0.29	+0.5
2,583,508	-		GFF2567	0.29	+0.4
2,583,508	-		GFF2567	0.29	-0.2
2,583,508	-		GFF2567	0.29	-1.7
2,583,508	-		GFF2567	0.29	-0.4
2,583,508	-		GFF2567	0.29	+0.6
2,583,508	-		GFF2567	0.29	-1.0
2,583,508	-		GFF2567	0.29	-0.9
2,583,513	-		GFF2567	0.29	+0.2
2,583,529	-		GFF2567	0.31	-2.0
2,583,530	+		GFF2567	0.31	+0.3
2,583,567	+		GFF2567	0.35	+0.9
2,583,573	+		GFF2567	0.36	-0.2
2,583,575	-		GFF2567	0.36	-0.4
2,583,581	-		GFF2567	0.37	-2.1
2,583,606	+		GFF2567	0.40	+1.0
2,583,613	+		GFF2567	0.41	-1.6
2,583,613	-		GFF2567	0.41	-1.6
2,583,676	-		GFF2567	0.48	+0.2
2,583,707	-		GFF2567	0.52	-0.9
2,583,724	+		GFF2567	0.54	+0.7
2,583,733	+		GFF2567	0.55	-0.8
2,583,733	+		GFF2567	0.55	-1.3
2,583,741	-		GFF2567	0.55	-1.3
2,583,790	-		GFF2567	0.61	+1.7
2,583,825	+		GFF2567	0.65	-1.3
2,583,850	-		GFF2567	0.68	-0.9
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