Strain Fitness in Sphingobium sp. HT1-2 around GFF2565

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,580,201	+				-1.6
2,580,201	+				-1.0
2,580,201	+				+0.1
2,580,201	+				-2.0
2,580,201	+				-1.4
2,580,201	+				+0.2
2,580,201	+				+0.6
2,580,201	+				-0.9
2,580,201	+				-2.2
2,580,201	+				-0.5
2,580,201	+				+0.4
2,580,201	+				+1.5
2,580,201	+				-0.6
2,580,201	+				-0.1
2,580,204	-				+0.1
2,580,209	-				-0.1
2,580,209	-				-0.2
2,580,209	-				-1.6
2,580,209	-				+0.3
2,580,209	-				+0.4
2,580,209	-				+0.3
2,580,209	-				-0.8
2,580,209	-				+0.3
2,580,209	-				-0.5
2,580,209	-				-0.3
2,580,209	-				+0.3
2,580,209	-				-0.4
2,580,209	-				-0.0
2,580,209	-				+0.1
2,580,231	-				-0.7
2,580,233	+				-0.6
2,580,240	+				+0.5
2,580,243	+				-0.3
2,580,248	+		GFF2564	0.10	-2.0
2,580,248	+		GFF2564	0.10	+1.7
2,580,248	+		GFF2564	0.10	+0.3
2,580,248	+		GFF2564	0.10	+0.4
2,580,256	-		GFF2564	0.11	-0.3
2,580,256	-		GFF2564	0.11	+0.8
2,580,256	-		GFF2564	0.11	+0.6
2,580,256	-		GFF2564	0.11	+0.1
2,580,256	-		GFF2564	0.11	-1.3
2,580,266	-		GFF2564	0.12	-1.2
2,580,285	+		GFF2564	0.14	-0.4
2,580,301	-		GFF2564	0.16	+1.4
2,580,322	+		GFF2564	0.19	+1.4
2,580,328	+		GFF2564	0.19	-2.1
2,580,328	+		GFF2564	0.19	-0.1
2,580,329	-		GFF2564	0.19	+0.6
2,580,332	+		GFF2564	0.20	-0.9
2,580,332	+		GFF2564	0.20	+0.7
2,580,332	+		GFF2564	0.20	+0.2
2,580,332	+		GFF2564	0.20	-1.1
2,580,340	-		GFF2564	0.21	-1.2
2,580,347	+		GFF2564	0.21	-0.3
2,580,351	+		GFF2564	0.22	-0.1
2,580,351	+		GFF2564	0.22	-0.5
2,580,359	-		GFF2564	0.23	+0.4
2,580,359	-		GFF2564	0.23	-1.7
2,580,359	-		GFF2564	0.23	-1.0
2,580,359	-		GFF2564	0.23	-1.3
2,580,359	-		GFF2564	0.23	-0.1
2,580,376	-		GFF2564	0.25	-1.9
2,580,378	-		GFF2564	0.25	-1.8
2,580,382	+		GFF2564	0.25	-0.2
2,580,382	+		GFF2564	0.25	-1.6
2,580,406	+		GFF2564	0.28	-2.1
2,580,406	+		GFF2564	0.28	+0.5
2,580,414	-		GFF2564	0.29	+0.7
2,580,421	+		GFF2564	0.30	-0.2
2,580,421	+		GFF2564	0.30	+0.8
2,580,421	+		GFF2564	0.30	+0.1
2,580,421	+		GFF2564	0.30	-0.1
2,580,421	+		GFF2564	0.30	+1.2
2,580,421	+		GFF2564	0.30	+1.0
2,580,421	+		GFF2564	0.30	-0.4
2,580,421	+		GFF2564	0.30	+0.1
2,580,421	+		GFF2564	0.30	+1.0
2,580,421	+		GFF2564	0.30	-0.5
2,580,421	+		GFF2564	0.30	-0.7
2,580,421	+		GFF2564	0.30	+0.4
2,580,429	-		GFF2564	0.31	-0.3
2,580,429	-		GFF2564	0.31	-0.4
2,580,429	-		GFF2564	0.31	-1.0
2,580,429	-		GFF2564	0.31	-1.5
2,580,429	-		GFF2564	0.31	-0.9
2,580,429	-		GFF2564	0.31	+0.8
2,580,429	-		GFF2564	0.31	+1.0
2,580,429	-		GFF2564	0.31	+0.3
2,580,429	-		GFF2564	0.31	+0.1
2,580,429	-		GFF2564	0.31	-0.2
2,580,429	-		GFF2564	0.31	+0.1
2,580,431	+		GFF2564	0.31	-1.2
2,580,434	-		GFF2564	0.31	+0.0
2,580,434	-		GFF2564	0.31	-1.3
2,580,434	-		GFF2564	0.31	+0.8
2,580,435	-		GFF2564	0.31	+0.3
2,580,452	+		GFF2564	0.33	-1.1
2,580,463	+		GFF2564	0.34	+0.5
2,580,463	+		GFF2564	0.34	+0.0
2,580,465	-		GFF2564	0.35	-0.1
2,580,471	-		GFF2564	0.35	+2.0
2,580,488	-		GFF2564	0.37	-0.3
2,580,500	+		GFF2564	0.39	-1.3
2,580,502	-		GFF2564	0.39	+0.2
2,580,506	+		GFF2564	0.39	+1.0
2,580,520	+		GFF2564	0.41	-1.1
2,580,520	+		GFF2564	0.41	-0.9
2,580,520	+		GFF2564	0.41	-0.8
2,580,520	+		GFF2564	0.41	-0.1
2,580,520	+		GFF2564	0.41	+0.1
2,580,520	+		GFF2564	0.41	+0.1
2,580,520	+		GFF2564	0.41	-0.3
2,580,520	+		GFF2564	0.41	-1.2
2,580,525	+		GFF2564	0.41	-1.1
2,580,528	-		GFF2564	0.42	-0.4
2,580,528	-		GFF2564	0.42	-1.2
2,580,528	-		GFF2564	0.42	+0.6
2,580,533	-		GFF2564	0.42	-0.2
2,580,588	+		GFF2564	0.48	-1.0
2,580,588	+		GFF2564	0.48	-1.7
2,580,589	+		GFF2564	0.49	+0.5
2,580,589	+		GFF2564	0.49	-1.3
2,580,597	-		GFF2564	0.49	-2.7
2,580,597	-		GFF2564	0.49	+0.4
2,580,628	+		GFF2564	0.53	-0.6
2,580,633	+		GFF2564	0.54	-1.8
2,580,636	-		GFF2564	0.54	+0.8
2,580,643	+		GFF2564	0.55	+0.2
2,580,651	-		GFF2564	0.56	-1.6
2,580,658	+		GFF2564	0.56	-0.3
2,580,658	+		GFF2564	0.56	-0.5
2,580,658	+		GFF2564	0.56	-1.3
2,580,666	-		GFF2564	0.57	-0.4
2,580,668	+		GFF2564	0.57	-0.4
2,580,668	+		GFF2564	0.57	+0.7
2,580,673	+		GFF2564	0.58	-1.2
2,580,678	+		GFF2564	0.59	+0.5
2,580,681	-		GFF2564	0.59	+0.9
2,580,686	-		GFF2564	0.59	-0.8
2,580,687	+		GFF2564	0.60	-0.2
2,580,700	-		GFF2564	0.61	+0.5
2,580,720	+		GFF2564	0.63	-1.2
2,580,727	+		GFF2564	0.64	-0.2
2,580,727	+		GFF2564	0.64	-1.3
2,580,727	+		GFF2564	0.64	-2.1
2,580,735	-		GFF2564	0.65	-2.4
2,580,735	-		GFF2564	0.65	-1.2
2,580,735	-		GFF2564	0.65	+0.4
2,580,735	-		GFF2564	0.65	+0.2
2,580,735	-		GFF2564	0.65	-0.3
2,580,735	-		GFF2564	0.65	+0.1
2,580,735	-		GFF2564	0.65	+0.2
2,580,742	+		GFF2564	0.66	-0.5
2,580,771	-		GFF2564	0.69	+0.1
2,580,794	+		GFF2564	0.72	+0.7
2,580,802	-		GFF2564	0.73	-0.0
2,580,808	-		GFF2564	0.73	+1.2
2,580,816	+		GFF2564	0.74	-2.2
2,580,831	+		GFF2564	0.76	+0.2
2,580,831	+		GFF2564	0.76	-0.8
2,580,839	-		GFF2564	0.77	-1.6
2,580,839	-		GFF2564	0.77	+0.5
2,580,839	-		GFF2564	0.77	-0.2
2,580,839	-		GFF2564	0.77	+0.4
2,580,847	+		GFF2564	0.78	-2.3
2,580,876	+		GFF2564	0.81	-0.1
2,580,894	+		GFF2564	0.83	+0.8
2,580,902	-		GFF2564	0.84	-0.3
2,580,919	-		GFF2564	0.86	+1.0
2,580,956	-		GFF2564	0.90	+0.3
2,580,961	-				+1.1
2,581,002	-				-0.5
2,581,007	-				+0.2
2,581,007	-				-0.7
2,581,033	+				+0.7
2,581,045	+				-1.5
2,581,046	+				-1.7
2,581,053	-				+0.2
2,581,053	-				-1.8
2,581,053	-				+0.9
2,581,077	+				-0.1
2,581,080	+				+0.7
2,581,085	-				-0.4
2,581,088	-				+0.2
2,581,088	-				-1.2
2,581,121	+				+1.6
2,581,121	-				-1.5
2,581,138	-				-0.7
2,581,190	-				+0.2
2,581,208	+				+0.7
2,581,235	+				-2.5
2,581,241	+				-0.2
2,581,241	+				-0.3
2,581,241	-				-0.8
2,581,243	+				+0.4
2,581,249	-				-0.7
2,581,250	-				-0.5
2,581,287	-				+1.7
2,581,296	+				+0.0
2,581,298	-				-0.1
2,581,304	-				+0.1
2,581,306	+				-0.5
2,581,308	-				-1.2
2,581,308	-				-0.5
2,581,311	+				-0.3
2,581,314	-				-0.4
2,581,319	-		GFF2565	0.10	-1.0
2,581,341	-		GFF2565	0.12	-0.4
2,581,346	-		GFF2565	0.12	-0.6
2,581,346	-		GFF2565	0.12	+0.9
2,581,351	-		GFF2565	0.13	-0.7
2,581,372	-		GFF2565	0.15	+0.3
2,581,419	+		GFF2565	0.19	+0.3
2,581,419	+		GFF2565	0.19	-1.8
2,581,419	+		GFF2565	0.19	+0.6
2,581,427	-		GFF2565	0.19	+0.4
2,581,427	-		GFF2565	0.19	+0.5
2,581,451	+		GFF2565	0.21	-2.2
2,581,465	+		GFF2565	0.23	+0.7
2,581,466	+		GFF2565	0.23	+0.7
2,581,470	+		GFF2565	0.23	-0.7
2,581,470	+		GFF2565	0.23	+0.0
2,581,470	+		GFF2565	0.23	-1.3
2,581,470	+		GFF2565	0.23	-1.1
2,581,478	-		GFF2565	0.24	-0.5
2,581,490	+		GFF2565	0.25	-2.0
2,581,514	-		GFF2565	0.27	-1.3
2,581,570	+		GFF2565	0.31	-0.7
2,581,570	+		GFF2565	0.31	-0.4
2,581,578	-		GFF2565	0.32	-0.6
2,581,578	-		GFF2565	0.32	-0.7
2,581,578	-		GFF2565	0.32	+0.2
2,581,625	-		GFF2565	0.36	-2.7
2,581,634	+		GFF2565	0.37	+2.0
2,581,634	+		GFF2565	0.37	-1.2
2,581,642	-		GFF2565	0.38	-1.3
2,581,642	-		GFF2565	0.38	-2.2
2,581,644	-		GFF2565	0.38	-1.6
2,581,647	+		GFF2565	0.38	+2.3
2,581,649	+		GFF2565	0.38	+1.1
2,581,649	+		GFF2565	0.38	-0.1
2,581,655	-		GFF2565	0.39	+0.4
2,581,657	-		GFF2565	0.39	-0.7
2,581,670	+		GFF2565	0.40	-1.5
2,581,673	-		GFF2565	0.40	-0.8
2,581,673	-		GFF2565	0.40	-1.0
2,581,675	+		GFF2565	0.40	-0.6
2,581,675	+		GFF2565	0.40	-1.8
2,581,678	-		GFF2565	0.41	-0.0
2,581,680	+		GFF2565	0.41	-0.9
2,581,757	-		GFF2565	0.47	+0.1
2,581,768	+		GFF2565	0.48	+0.4
2,581,771	-		GFF2565	0.49	-0.3
2,581,790	+		GFF2565	0.50	+0.4
2,581,812	+		GFF2565	0.52	+0.2
2,581,822	+		GFF2565	0.53	-0.8
2,581,822	+		GFF2565	0.53	+0.3
2,581,825	-		GFF2565	0.53	-0.5
2,581,826	-		GFF2565	0.53	+0.1
2,581,833	+		GFF2565	0.54	-0.2
2,581,837	-		GFF2565	0.54	-0.1
2,581,838	+		GFF2565	0.54	+0.6
2,581,848	+		GFF2565	0.55	-1.2
2,581,848	+		GFF2565	0.55	-2.0
2,581,848	+		GFF2565	0.55	-0.3
2,581,856	-		GFF2565	0.56	+0.8
2,581,856	-		GFF2565	0.56	-0.9
2,581,868	+		GFF2565	0.57	-1.8
2,581,878	-		GFF2565	0.58	-0.3
2,581,887	+		GFF2565	0.58	-0.5
2,581,887	+		GFF2565	0.58	-0.0
2,581,895	-		GFF2565	0.59	-0.9
2,581,895	-		GFF2565	0.59	-0.8
2,581,939	+		GFF2565	0.63	+0.8
2,581,939	-		GFF2565	0.63	-2.2
2,581,947	-		GFF2565	0.63	-0.9
2,581,961	-		GFF2565	0.65	+0.5
2,582,000	+		GFF2565	0.68	-1.2
2,582,008	-		GFF2565	0.69	-1.2
2,582,016	+		GFF2565	0.69	-0.2
2,582,019	+		GFF2565	0.70	-0.9
2,582,023	+		GFF2565	0.70	+0.7
2,582,031	+		GFF2565	0.71	-1.8
2,582,034	+		GFF2565	0.71	+0.6
2,582,048	-		GFF2565	0.72	-0.3
2,582,067	-		GFF2565	0.74	-0.3
2,582,083	-		GFF2565	0.75	-0.6
2,582,088	-		GFF2565	0.75	+1.2
2,582,102	+		GFF2565	0.77	-2.4
2,582,102	+		GFF2565	0.77	-0.8
2,582,107	+		GFF2565	0.77	-1.8
2,582,108	-		GFF2565	0.77	-0.0
2,582,110	-		GFF2565	0.77	+0.7
2,582,110	-		GFF2565	0.77	-0.2
2,582,110	-		GFF2565	0.77	-2.0
2,582,110	-		GFF2565	0.77	-1.0
2,582,112	+		GFF2565	0.77	-0.2
2,582,112	+		GFF2565	0.77	-1.0
2,582,120	-		GFF2565	0.78	-0.8
2,582,120	-		GFF2565	0.78	-0.2
2,582,120	-		GFF2565	0.78	-0.3
2,582,120	-		GFF2565	0.78	-0.1
2,582,120	-		GFF2565	0.78	-0.8
2,582,121	+		GFF2565	0.78	+0.1
2,582,121	+		GFF2565	0.78	+0.2
2,582,129	-		GFF2565	0.79	+0.0
2,582,136	-		GFF2565	0.79	+1.5
2,582,155	+		GFF2565	0.81	-1.4
2,582,155	+		GFF2565	0.81	+0.2
2,582,181	-		GFF2565	0.83	+1.5
2,582,211	-		GFF2565	0.86	-0.2
2,582,279	+				+0.6
2,582,281	+				+1.0
2,582,284	-				-1.1
2,582,331	+				+1.0
2,582,354	-				-0.8
2,582,376	+				+0.5
2,582,381	+				-2.4
2,582,396	+				-0.6
2,582,400	-				-0.3
2,582,401	+				+0.8
2,582,404	-				-0.0
2,582,414	-				-0.0
2,582,445	-				-0.3
2,582,449	+				-1.2
2,582,449	-				-1.1
2,582,473	+		GFF2566	0.12	-1.0
2,582,473	+		GFF2566	0.12	-0.0
2,582,473	+		GFF2566	0.12	-2.1
2,582,474	-		GFF2566	0.13	-1.5
2,582,481	-		GFF2566	0.14	+0.3
2,582,514	-		GFF2566	0.18	-1.3
2,582,525	+		GFF2566	0.19	-2.4
2,582,525	+		GFF2566	0.19	+0.7
2,582,525	+		GFF2566	0.19	-0.6
2,582,527	+		GFF2566	0.19	-0.2
2,582,533	-		GFF2566	0.20	-2.1
2,582,539	-		GFF2566	0.21	-1.8
2,582,541	-		GFF2566	0.21	-0.2
2,582,543	-		GFF2566	0.21	-2.2
2,582,551	+		GFF2566	0.22	-0.1
2,582,556	+		GFF2566	0.23	-1.6
2,582,563	+		GFF2566	0.24	-0.8
2,582,564	+		GFF2566	0.24	-1.1
2,582,564	+		GFF2566	0.24	-2.0
2,582,564	+		GFF2566	0.24	-2.0
2,582,564	+		GFF2566	0.24	-0.8
2,582,564	+		GFF2566	0.24	-1.0
2,582,564	-		GFF2566	0.24	+1.0
2,582,572	-		GFF2566	0.25	+0.7
2,582,572	-		GFF2566	0.25	-0.6
2,582,572	-		GFF2566	0.25	+0.8
2,582,572	-		GFF2566	0.25	-1.5
2,582,572	-		GFF2566	0.25	-1.3
2,582,572	-		GFF2566	0.25	-0.6
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