Strain Fitness in Sphingobium sp. HT1-2 around GFF2443

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,462,276	+				+0.3
2,462,276	+				+0.1
2,462,276	+				-1.1
2,462,276	+				-0.2
2,462,282	+				-1.4
2,462,310	+				+0.8
2,462,318	+				+0.3
2,462,320	+				+0.2
2,462,320	+				-3.1
2,462,320	+				+0.0
2,462,424	+		GFF2443	0.23	+0.9
2,462,424	+		GFF2443	0.23	-1.7
2,462,432	-		GFF2443	0.24	-0.6
2,462,434	-		GFF2443	0.25	-2.6
2,462,438	-		GFF2443	0.25	-0.6
2,462,487	+		GFF2443	0.32	-0.4
2,462,503	-		GFF2443	0.35	-0.4
2,462,522	-		GFF2443	0.38	-2.0
2,462,540	+		GFF2443	0.40	+0.2
2,462,545	+		GFF2443	0.41	+1.7
2,462,545	+		GFF2443	0.41	-0.4
2,462,545	+		GFF2443	0.41	+1.2
2,462,545	+		GFF2443	0.41	-1.2
2,462,548	-		GFF2443	0.42	-1.0
2,462,550	+		GFF2443	0.42	-1.9
2,462,550	+		GFF2443	0.42	+0.8
2,462,550	+		GFF2443	0.42	-0.3
2,462,553	-		GFF2443	0.42	-2.6
2,462,553	-		GFF2443	0.42	-1.0
2,462,558	-		GFF2443	0.43	+0.6
2,462,592	+		GFF2443	0.48	-0.3
2,462,592	+		GFF2443	0.48	-0.3
2,462,592	+		GFF2443	0.48	-0.3
2,462,600	+		GFF2443	0.49	-1.5
2,462,600	-		GFF2443	0.49	-0.1
2,462,651	+		GFF2443	0.57	-0.4
2,462,652	+		GFF2443	0.57	-0.6
2,462,652	+		GFF2443	0.57	+0.8
2,462,664	-		GFF2443	0.59	+0.9
2,462,681	+		GFF2443	0.61	+0.1
2,462,681	+		GFF2443	0.61	+0.7
2,462,681	+		GFF2443	0.61	+1.1
2,462,689	-		GFF2443	0.63	-0.8
2,462,703	+		GFF2443	0.65	-0.1
2,462,713	+		GFF2443	0.66	-0.2
2,462,736	-		GFF2443	0.70	-0.9
2,462,749	+		GFF2443	0.72	+1.1
2,462,757	-		GFF2443	0.73	-0.6
2,462,757	-		GFF2443	0.73	+1.2
2,462,757	-		GFF2443	0.73	-1.6
2,462,837	+		GFF2443	0.85	-0.3
2,462,838	+		GFF2443	0.85	+0.3
2,462,846	-		GFF2443	0.86	+0.7
2,462,882	+				+0.7
2,462,904	+				+1.0
2,462,906	+				+0.3
2,462,925	-				-0.8
2,462,950	+				+0.1
2,462,950	+				-0.7
2,462,955	+				+0.1
2,462,963	+				-1.8
2,463,017	+		GFF2444	0.11	-0.2
2,463,020	+		GFF2444	0.11	-0.8
2,463,028	+		GFF2444	0.12	-2.2
2,463,036	-		GFF2444	0.13	+0.1
2,463,036	-		GFF2444	0.13	+0.0
2,463,036	-		GFF2444	0.13	-1.8
2,463,036	-		GFF2444	0.13	+0.4
2,463,069	+		GFF2444	0.18	+0.4
2,463,095	-		GFF2444	0.21	-2.1
2,463,095	-		GFF2444	0.21	-3.2
2,463,098	+		GFF2444	0.21	+0.5
2,463,106	-		GFF2444	0.22	-1.1
2,463,108	+		GFF2444	0.23	-2.1
2,463,108	+		GFF2444	0.23	-1.3
2,463,108	+		GFF2444	0.23	-0.5
2,463,108	+		GFF2444	0.23	-1.2
2,463,108	+		GFF2444	0.23	-0.4
2,463,108	+		GFF2444	0.23	-2.8
2,463,108	+		GFF2444	0.23	-0.5
2,463,111	-		GFF2444	0.23	-1.7
2,463,111	-		GFF2444	0.23	+1.0
2,463,116	-		GFF2444	0.24	+0.7
2,463,116	-		GFF2444	0.24	-0.3
2,463,116	-		GFF2444	0.24	+0.2
2,463,116	-		GFF2444	0.24	+0.8
2,463,116	-		GFF2444	0.24	+0.2
2,463,116	-		GFF2444	0.24	-1.5
2,463,155	+		GFF2444	0.29	+1.5
2,463,170	+		GFF2444	0.31	-0.8
2,463,170	+		GFF2444	0.31	+1.0
2,463,178	-		GFF2444	0.32	-0.1
2,463,189	-		GFF2444	0.33	-1.3
2,463,205	+		GFF2444	0.35	-1.0
2,463,205	+		GFF2444	0.35	+0.5
2,463,218	-		GFF2444	0.37	-0.8
2,463,218	-		GFF2444	0.37	-2.0
2,463,292	-		GFF2444	0.47	+0.4
2,463,292	-		GFF2444	0.47	-0.1
2,463,297	-		GFF2444	0.48	-0.3
2,463,311	+		GFF2444	0.49	-1.1
2,463,319	-		GFF2444	0.50	-1.0
2,463,321	+		GFF2444	0.51	+0.5
2,463,323	+		GFF2444	0.51	-1.3
2,463,323	+		GFF2444	0.51	+0.1
2,463,323	+		GFF2444	0.51	-0.2
2,463,326	-		GFF2444	0.51	-2.1
2,463,329	-		GFF2444	0.52	-1.2
2,463,331	-		GFF2444	0.52	+0.5
2,463,347	-		GFF2444	0.54	+0.2
2,463,350	+		GFF2444	0.54	-0.3
2,463,365	+		GFF2444	0.56	-1.3
2,463,366	-		GFF2444	0.57	+0.5
2,463,366	-		GFF2444	0.57	+0.9
2,463,368	-		GFF2444	0.57	-0.3
2,463,376	-		GFF2444	0.58	+0.2
2,463,387	+		GFF2444	0.59	+0.5
2,463,387	+		GFF2444	0.59	+0.4
2,463,392	+		GFF2444	0.60	+0.5
2,463,392	+		GFF2444	0.60	-0.3
2,463,395	-		GFF2444	0.60	-0.7
2,463,395	-		GFF2444	0.60	-1.5
2,463,400	-		GFF2444	0.61	-0.5
2,463,402	+		GFF2444	0.61	-1.3
2,463,402	+		GFF2444	0.61	-2.3
2,463,404	-		GFF2444	0.62	-0.5
2,463,407	+		GFF2444	0.62	+0.1
2,463,410	-		GFF2444	0.62	-2.1
2,463,410	-		GFF2444	0.62	-1.6
2,463,410	-		GFF2444	0.62	-1.8
2,463,415	-		GFF2444	0.63	+0.3
2,463,417	+		GFF2444	0.63	+0.6
2,463,423	-		GFF2444	0.64	+0.6
2,463,437	+		GFF2444	0.66	-2.2
2,463,448	+		GFF2444	0.67	-2.2
2,463,460	+		GFF2444	0.69	+0.1
2,463,486	+		GFF2444	0.72	-0.7
2,463,495	-		GFF2444	0.73	-0.2
2,463,532	+		GFF2444	0.78	-0.1
2,463,532	+		GFF2444	0.78	-1.3
2,463,532	+		GFF2444	0.78	-0.6
2,463,532	+		GFF2444	0.78	-1.3
2,463,532	+		GFF2444	0.78	+0.4
2,463,532	+		GFF2444	0.78	-0.7
2,463,532	+		GFF2444	0.78	-0.2
2,463,532	+		GFF2444	0.78	-0.4
2,463,532	+		GFF2444	0.78	+0.2
2,463,532	+		GFF2444	0.78	+0.6
2,463,532	+		GFF2444	0.78	-0.5
2,463,532	+		GFF2444	0.78	-0.4
2,463,537	+		GFF2444	0.79	-1.3
2,463,540	-		GFF2444	0.79	+0.2
2,463,540	-		GFF2444	0.79	-2.5
2,463,540	-		GFF2444	0.79	+1.0
2,463,540	-		GFF2444	0.79	-1.7
2,463,540	-		GFF2444	0.79	-1.2
2,463,540	-		GFF2444	0.79	+0.7
2,463,540	-		GFF2444	0.79	-0.3
2,463,540	-		GFF2444	0.79	-1.7
2,463,551	+		GFF2444	0.81	-1.5
2,463,559	+		GFF2444	0.82	-0.3
2,463,572	-		GFF2444	0.84	+1.7
2,463,592	+		GFF2444	0.86	+0.5
2,463,600	-		GFF2444	0.87	+0.5
2,463,600	-		GFF2444	0.87	-0.3
2,463,608	+		GFF2444	0.88	-0.5
2,463,628	+				-1.3
2,463,628	+				+0.2
2,463,628	+				-0.6
2,463,628	+				-1.7
2,463,628	+				+0.8
2,463,628	+				+0.0
2,463,628	+				+0.7
2,463,628	+				-2.0
2,463,636	-				+0.5
2,463,636	-				+0.1
2,463,637	-				+1.1
2,463,637	-				+0.2
2,463,641	-				-0.5
2,463,648	+				+1.1
2,463,650	-				-0.3
2,463,700	+				-2.4
2,463,710	-				-2.0
2,463,710	-				+0.2
2,463,741	-				+0.5
2,463,743	+				+1.1
2,463,751	-				-1.0
2,463,751	-				+0.9
2,463,775	+				+0.7
2,463,791	-				-1.8
2,463,819	-				+0.3
2,463,819	-				-2.3
2,463,845	-				+0.1
2,463,880	-				-1.3
2,463,904	+				+0.3
2,463,905	+				-2.2
2,463,910	+				+1.2
2,463,910	+				-0.2
2,463,910	+				-1.4
2,463,910	+				+0.0
2,463,910	+				+1.1
2,463,913	-				-1.2
2,463,918	-				+1.2
2,463,918	-				-1.1