Strain Fitness in Sphingobium sp. HT1-2 around GFF2439

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,455,229	+		GFF2438	0.42	+0.7
2,455,259	+		GFF2438	0.44	+1.1
2,455,259	-		GFF2438	0.44	-0.4
2,455,275	-		GFF2438	0.45	-0.1
2,455,349	+		GFF2438	0.49	+0.8
2,455,349	+		GFF2438	0.49	-0.3
2,455,349	+		GFF2438	0.49	-1.9
2,455,357	+		GFF2438	0.50	+0.3
2,455,357	-		GFF2438	0.50	+0.7
2,455,365	-		GFF2438	0.50	-0.9
2,455,366	-		GFF2438	0.50	-0.5
2,455,430	+		GFF2438	0.54	-0.2
2,455,430	+		GFF2438	0.54	-0.9
2,455,430	+		GFF2438	0.54	-1.3
2,455,430	+		GFF2438	0.54	-1.2
2,455,430	+		GFF2438	0.54	-0.4
2,455,430	+		GFF2438	0.54	-1.2
2,455,430	+		GFF2438	0.54	-0.5
2,455,438	-		GFF2438	0.55	-0.2
2,455,438	-		GFF2438	0.55	+0.7
2,455,438	-		GFF2438	0.55	+0.4
2,455,438	-		GFF2438	0.55	+0.5
2,455,438	-		GFF2438	0.55	-0.3
2,455,438	-		GFF2438	0.55	-0.1
2,455,438	-		GFF2438	0.55	-2.2
2,455,438	-		GFF2438	0.55	+0.8
2,455,438	-		GFF2438	0.55	-0.4
2,455,438	-		GFF2438	0.55	-0.7
2,455,438	-		GFF2438	0.55	-1.6
2,455,438	-		GFF2438	0.55	-0.8
2,455,438	-		GFF2438	0.55	-0.8
2,455,444	-		GFF2438	0.55	-0.7
2,455,456	-		GFF2438	0.56	+0.0
2,455,458	+		GFF2438	0.56	-0.1
2,455,491	+		GFF2438	0.58	-1.3
2,455,504	+		GFF2438	0.59	+0.3
2,455,512	-		GFF2438	0.59	+0.3
2,455,512	-		GFF2438	0.59	+0.9
2,455,514	+		GFF2438	0.60	+0.2
2,455,518	+		GFF2438	0.60	+0.2
2,455,538	+		GFF2438	0.61	+0.9
2,455,555	-		GFF2438	0.62	-0.4
2,455,555	-		GFF2438	0.62	+0.6
2,455,565	+		GFF2438	0.63	+0.8
2,455,565	+		GFF2438	0.63	-0.8
2,455,569	+		GFF2438	0.63	-0.3
2,455,570	+		GFF2438	0.63	+0.3
2,455,578	-		GFF2438	0.64	+1.3
2,455,581	+		GFF2438	0.64	+1.0
2,455,585	-		GFF2438	0.64	+0.7
2,455,589	-		GFF2438	0.64	+0.8
2,455,598	+		GFF2438	0.65	-1.4
2,455,616	+		GFF2438	0.66	+0.3
2,455,623	+		GFF2438	0.66	+0.1
2,455,623	+		GFF2438	0.66	-0.2
2,455,623	+		GFF2438	0.66	+1.4
2,455,632	-		GFF2438	0.67	-0.5
2,455,646	+		GFF2438	0.68	-0.2
2,455,646	+		GFF2438	0.68	-1.3
2,455,650	+		GFF2438	0.68	+0.2
2,455,650	+		GFF2438	0.68	+0.7
2,455,650	+		GFF2438	0.68	+0.7
2,455,658	-		GFF2438	0.68	-0.3
2,455,666	+		GFF2438	0.69	-0.6
2,455,676	+		GFF2438	0.70	-0.8
2,455,683	+		GFF2438	0.70	-1.4
2,455,683	+		GFF2438	0.70	-1.7
2,455,686	-		GFF2438	0.70	-0.3
2,455,686	-		GFF2438	0.70	+0.7
2,455,691	-		GFF2438	0.71	+0.9
2,455,738	-		GFF2438	0.73	-0.9
2,455,741	+		GFF2438	0.74	+1.5
2,455,751	-		GFF2438	0.74	-0.6
2,455,774	+		GFF2438	0.76	-2.3
2,455,780	+		GFF2438	0.76	+1.8
2,455,780	+		GFF2438	0.76	+0.7
2,455,782	-		GFF2438	0.76	+0.9
2,455,788	-		GFF2438	0.77	+1.3
2,455,788	-		GFF2438	0.77	-0.3
2,455,792	-		GFF2438	0.77	-1.6
2,455,804	+		GFF2438	0.78	+1.4
2,455,804	+		GFF2438	0.78	+0.0
2,455,812	-		GFF2438	0.78	+1.2
2,455,812	-		GFF2438	0.78	-0.4
2,455,817	-		GFF2438	0.78	-0.1
2,455,825	+		GFF2438	0.79	-1.7
2,455,837	+		GFF2438	0.80	-1.5
2,455,838	-		GFF2438	0.80	-0.8
2,455,838	-		GFF2438	0.80	-2.2
2,455,887	+		GFF2438	0.83	+0.4
2,455,892	+		GFF2438	0.83	-0.5
2,455,892	+		GFF2438	0.83	+0.5
2,455,895	-		GFF2438	0.83	+0.1
2,455,904	+		GFF2438	0.84	+0.3
2,455,909	+		GFF2438	0.84	-2.0
2,455,927	-		GFF2438	0.85	-0.7
2,455,960	-		GFF2438	0.87	+0.7
2,455,960	-		GFF2438	0.87	+1.1
2,455,986	-		GFF2438	0.89	+1.3
2,455,986	-		GFF2438	0.89	+0.3
2,455,993	+		GFF2438	0.89	+0.6
2,455,993	+		GFF2438	0.89	-2.1
2,455,994	+		GFF2438	0.89	+0.6
2,456,002	-		GFF2438	0.90	-0.2
2,456,002	-		GFF2438	0.90	-1.6
2,456,002	-		GFF2438	0.90	+0.8
2,456,006	-				+0.2
2,456,008	+				+0.1
2,456,016	-				-1.1
2,456,023	-				+0.0
2,456,033	-				-0.1
2,456,038	+				+0.5
2,456,038	+				+0.0
2,456,038	+				-0.5
2,456,095	+				+0.9
2,456,103	-				-1.4
2,456,105	+				+1.5
2,456,112	+				+0.4
2,456,117	+				+0.1
2,456,125	-				-1.1
2,456,128	+				+0.6
2,456,136	-				+1.0
2,456,142	+				+1.9
2,456,160	+				+0.4
2,456,171	+				+2.1
2,456,190	-				+1.0
2,456,197	-				-1.9
2,456,197	-				+0.2
2,456,199	-				+0.7
2,456,222	-				-1.0
2,456,227	+				-0.3
2,456,227	+				+0.3
2,456,227	+				-0.7
2,456,227	+				-1.6
2,456,227	+				-1.4
2,456,235	-				-0.7
2,456,235	-				+0.3
2,456,235	-				+0.7
2,456,250	+				-0.6
2,456,367	+		GFF2439	0.11	+0.6
2,456,367	+		GFF2439	0.11	-1.8
2,456,367	+		GFF2439	0.11	+0.3
2,456,370	-		GFF2439	0.11	-2.2
2,456,375	-		GFF2439	0.12	-0.3
2,456,389	-		GFF2439	0.12	-0.3
2,456,450	-		GFF2439	0.17	+0.0
2,456,450	-		GFF2439	0.17	+0.0
2,456,450	-		GFF2439	0.17	-0.3
2,456,470	+		GFF2439	0.18	-0.0
2,456,470	+		GFF2439	0.18	-2.2
2,456,470	+		GFF2439	0.18	+0.2
2,456,470	+		GFF2439	0.18	-2.6
2,456,470	+		GFF2439	0.18	+0.8
2,456,470	+		GFF2439	0.18	+0.5
2,456,478	-		GFF2439	0.18	-1.3
2,456,478	-		GFF2439	0.18	-0.3
2,456,478	-		GFF2439	0.18	-1.1
2,456,478	-		GFF2439	0.18	+0.2
2,456,478	-		GFF2439	0.18	-1.6
2,456,496	+		GFF2439	0.20	+1.2
2,456,501	+		GFF2439	0.20	-0.9
2,456,507	+		GFF2439	0.20	-0.4
2,456,553	-		GFF2439	0.23	+1.3
2,456,563	+		GFF2439	0.24	+0.5
2,456,571	-		GFF2439	0.25	-1.7
2,456,571	-		GFF2439	0.25	+0.2
2,456,592	+		GFF2439	0.26	+0.4
2,456,599	+		GFF2439	0.27	-0.7
2,456,599	-		GFF2439	0.27	+1.2
2,456,599	-		GFF2439	0.27	+0.3
2,456,599	-		GFF2439	0.27	+0.3
2,456,600	-		GFF2439	0.27	-0.3
2,456,602	+		GFF2439	0.27	-0.4
2,456,607	-		GFF2439	0.27	-0.7
2,456,625	+		GFF2439	0.28	-0.7
2,456,626	-		GFF2439	0.28	-0.6
2,456,633	-		GFF2439	0.29	-1.6
2,456,655	-		GFF2439	0.30	-2.1
2,456,726	+		GFF2439	0.35	-0.8
2,456,731	-		GFF2439	0.35	-1.6
2,456,782	+		GFF2439	0.39	+0.3
2,456,782	+		GFF2439	0.39	-1.1
2,456,782	+		GFF2439	0.39	+0.5
2,456,784	+		GFF2439	0.39	+0.3
2,456,784	+		GFF2439	0.39	+1.8
2,456,784	+		GFF2439	0.39	-1.2
2,456,784	+		GFF2439	0.39	+1.4
2,456,784	+		GFF2439	0.39	+1.1
2,456,784	+		GFF2439	0.39	-0.4
2,456,784	+		GFF2439	0.39	-0.8
2,456,790	-		GFF2439	0.39	-3.0
2,456,790	-		GFF2439	0.39	-0.6
2,456,790	-		GFF2439	0.39	-0.2
2,456,790	-		GFF2439	0.39	-1.1
2,456,790	-		GFF2439	0.39	-1.1
2,456,792	-		GFF2439	0.39	-1.4
2,456,792	-		GFF2439	0.39	-0.7
2,456,792	-		GFF2439	0.39	-0.1
2,456,807	-		GFF2439	0.40	+0.3
2,456,807	-		GFF2439	0.40	-0.7
2,456,807	-		GFF2439	0.40	+0.0
2,456,809	+		GFF2439	0.41	-2.4
2,456,812	-		GFF2439	0.41	-0.6
2,456,817	-		GFF2439	0.41	+0.1
2,456,819	+		GFF2439	0.41	-0.7
2,456,822	+		GFF2439	0.41	-1.7
2,456,828	-		GFF2439	0.42	+0.1
2,456,830	-		GFF2439	0.42	+0.4
2,456,830	-		GFF2439	0.42	-1.4
2,456,830	-		GFF2439	0.42	+0.0
2,456,830	-		GFF2439	0.42	+0.7
2,456,843	+		GFF2439	0.43	+0.6
2,456,848	+		GFF2439	0.43	-1.4
2,456,848	+		GFF2439	0.43	+0.7
2,456,848	+		GFF2439	0.43	-0.7
2,456,848	+		GFF2439	0.43	-1.0
2,456,848	+		GFF2439	0.43	+0.2
2,456,848	+		GFF2439	0.43	-0.7
2,456,848	+		GFF2439	0.43	+1.1
2,456,848	+		GFF2439	0.43	-1.0
2,456,848	+		GFF2439	0.43	+1.7
2,456,848	+		GFF2439	0.43	+0.4
2,456,848	+		GFF2439	0.43	+0.9
2,456,848	+		GFF2439	0.43	-1.0
2,456,848	+		GFF2439	0.43	-2.4
2,456,848	+		GFF2439	0.43	-1.7
2,456,848	+		GFF2439	0.43	-1.2
2,456,848	+		GFF2439	0.43	+0.1
2,456,848	+		GFF2439	0.43	-0.3
2,456,848	+		GFF2439	0.43	+0.9
2,456,848	+		GFF2439	0.43	+1.1
2,456,856	-		GFF2439	0.44	-2.9
2,456,856	-		GFF2439	0.44	-0.7
2,456,856	-		GFF2439	0.44	+0.9
2,456,856	-		GFF2439	0.44	+0.2
2,456,856	-		GFF2439	0.44	-1.1
2,456,856	-		GFF2439	0.44	-1.6
2,456,856	-		GFF2439	0.44	-1.7
2,456,856	-		GFF2439	0.44	-1.7
2,456,856	-		GFF2439	0.44	+1.6
2,456,880	-		GFF2439	0.45	+0.1
2,456,901	+		GFF2439	0.47	-0.2
2,456,909	-		GFF2439	0.47	-0.1
2,456,909	-		GFF2439	0.47	-0.6
2,456,928	-		GFF2439	0.48	+0.4
2,456,961	-		GFF2439	0.51	-0.6
2,457,062	+		GFF2439	0.57	+1.5
2,457,063	+		GFF2439	0.58	-0.2
2,457,065	-		GFF2439	0.58	-0.9
2,457,095	-		GFF2439	0.60	-0.0
2,457,114	-		GFF2439	0.61	+1.3
2,457,127	-		GFF2439	0.62	+1.4
2,457,137	-		GFF2439	0.62	+0.3
2,457,149	+		GFF2439	0.63	+0.4
2,457,161	+		GFF2439	0.64	-0.9
2,457,165	+		GFF2439	0.64	-1.2
2,457,198	-		GFF2439	0.67	+0.5
2,457,199	+		GFF2439	0.67	-1.2
2,457,207	-		GFF2439	0.67	-0.5
2,457,209	+		GFF2439	0.67	+0.6
2,457,217	-		GFF2439	0.68	+1.8
2,457,219	+		GFF2439	0.68	-0.6
2,457,226	+		GFF2439	0.68	+1.0
2,457,231	+		GFF2439	0.69	+0.4
2,457,231	+		GFF2439	0.69	+0.1
2,457,231	+		GFF2439	0.69	-0.9
2,457,231	+		GFF2439	0.69	-1.4
2,457,231	+		GFF2439	0.69	-1.3
2,457,234	-		GFF2439	0.69	-0.2
2,457,234	-		GFF2439	0.69	+1.7
2,457,234	-		GFF2439	0.69	+0.9
2,457,239	-		GFF2439	0.69	-0.8
2,457,245	+		GFF2439	0.70	-0.0
2,457,245	+		GFF2439	0.70	-0.6
2,457,253	-		GFF2439	0.70	-1.4
2,457,253	-		GFF2439	0.70	+1.3
2,457,258	-		GFF2439	0.71	-0.2
2,457,261	+		GFF2439	0.71	+0.5
2,457,278	+		GFF2439	0.72	-1.3
2,457,286	-		GFF2439	0.72	+0.0
2,457,307	+		GFF2439	0.74	+0.4
2,457,314	+		GFF2439	0.74	-3.0
2,457,314	+		GFF2439	0.74	-1.4
2,457,314	+		GFF2439	0.74	-0.6
2,457,314	+		GFF2439	0.74	+1.3
2,457,322	-		GFF2439	0.75	+0.1
2,457,322	-		GFF2439	0.75	-0.0
2,457,327	-		GFF2439	0.75	-2.2
2,457,384	-		GFF2439	0.79	+0.7
2,457,389	-		GFF2439	0.79	-1.8
2,457,668	-				-0.3
2,457,700	+				+0.9
2,457,700	+				-1.4
2,457,732	-				-0.1
2,457,743	+				-2.7
2,457,745	-				+1.6
2,457,751	+				-0.9
2,457,801	+				-0.4
2,457,801	+				-0.7
2,457,815	+				+1.3
2,457,815	-				+0.4
2,457,820	+				+0.8
2,457,823	-				+0.3
2,457,839	+				-2.4
2,457,844	+				-2.0
2,457,873	+				+0.8
2,457,888	-				+0.7
2,457,905	-				-1.7
2,457,961	-				-1.0
2,457,966	-				-2.1
2,458,005	+				+0.6
2,458,010	+				+1.3
2,458,018	-				-0.2