Strain Fitness in Sphingobium sp. HT1-2 around GFF2407

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,426,859	+		GFF2406	0.40	-0.3
2,426,864	-		GFF2406	0.40	-0.1
2,426,873	+		GFF2406	0.41	-0.4
2,426,873	+		GFF2406	0.41	-1.1
2,426,873	+		GFF2406	0.41	+0.3
2,426,873	-		GFF2406	0.41	-2.3
2,426,881	+		GFF2406	0.41	-0.7
2,426,896	+		GFF2406	0.42	-0.1
2,426,896	+		GFF2406	0.42	+0.7
2,426,910	+		GFF2406	0.43	-0.2
2,426,922	+		GFF2406	0.44	+1.6
2,426,930	-		GFF2406	0.44	+0.3
2,426,943	-		GFF2406	0.45	-0.2
2,426,945	+		GFF2406	0.45	-1.6
2,426,950	+		GFF2406	0.45	-0.3
2,426,950	+		GFF2406	0.45	+1.0
2,426,950	+		GFF2406	0.45	+1.6
2,426,950	+		GFF2406	0.45	-1.3
2,426,950	+		GFF2406	0.45	-0.2
2,426,950	+		GFF2406	0.45	-0.6
2,426,958	-		GFF2406	0.46	-0.3
2,426,963	+		GFF2406	0.46	-2.0
2,426,963	+		GFF2406	0.46	+0.4
2,426,980	+		GFF2406	0.47	-0.2
2,426,982	+		GFF2406	0.47	-0.3
2,427,002	+		GFF2406	0.49	-0.7
2,427,008	+		GFF2406	0.49	+0.8
2,427,015	-		GFF2406	0.49	-0.2
2,427,023	+		GFF2406	0.50	-0.2
2,427,023	+		GFF2406	0.50	+1.5
2,427,026	-		GFF2406	0.50	-0.7
2,427,031	-		GFF2406	0.50	+0.4
2,427,031	-		GFF2406	0.50	+0.8
2,427,031	-		GFF2406	0.50	+1.2
2,427,036	-		GFF2406	0.51	+0.0
2,427,039	+		GFF2406	0.51	-0.7
2,427,046	-		GFF2406	0.51	+0.1
2,427,051	-		GFF2406	0.51	-1.7
2,427,100	+		GFF2406	0.54	+0.7
2,427,125	+		GFF2406	0.56	+0.7
2,427,129	-		GFF2406	0.56	-1.1
2,427,131	+		GFF2406	0.56	+1.4
2,427,131	+		GFF2406	0.56	+0.3
2,427,131	+		GFF2406	0.56	-0.3
2,427,136	+		GFF2406	0.57	+0.1
2,427,138	+		GFF2406	0.57	-0.3
2,427,138	-		GFF2406	0.57	-0.4
2,427,139	-		GFF2406	0.57	+1.0
2,427,139	-		GFF2406	0.57	+1.0
2,427,139	-		GFF2406	0.57	+0.1
2,427,141	+		GFF2406	0.57	-1.6
2,427,149	-		GFF2406	0.57	+0.7
2,427,149	-		GFF2406	0.57	-1.8
2,427,207	-		GFF2406	0.61	-0.7
2,427,213	+		GFF2406	0.61	-1.3
2,427,219	+		GFF2406	0.62	-2.4
2,427,220	+		GFF2406	0.62	-0.5
2,427,220	+		GFF2406	0.62	-0.0
2,427,228	-		GFF2406	0.62	-1.2
2,427,231	-		GFF2406	0.62	-0.7
2,427,246	+		GFF2406	0.63	+0.6
2,427,249	-		GFF2406	0.63	-0.6
2,427,260	-		GFF2406	0.64	+0.8
2,427,274	+		GFF2406	0.65	-0.1
2,427,315	-		GFF2406	0.67	-0.2
2,427,317	-		GFF2406	0.67	-1.3
2,427,317	-		GFF2406	0.67	+0.3
2,427,342	-		GFF2406	0.69	+0.6
2,427,344	+		GFF2406	0.69	+0.6
2,427,346	-		GFF2406	0.69	-1.2
2,427,353	+		GFF2406	0.70	-0.6
2,427,353	+		GFF2406	0.70	-1.6
2,427,412	-		GFF2406	0.73	+0.2
2,427,433	+		GFF2406	0.74	-1.3
2,427,434	+		GFF2406	0.74	+1.8
2,427,443	+		GFF2406	0.75	-0.5
2,427,460	+		GFF2406	0.76	+0.5
2,427,470	-		GFF2406	0.77	+0.4
2,427,475	+		GFF2406	0.77	-1.3
2,427,477	+		GFF2406	0.77	-0.1
2,427,477	+		GFF2406	0.77	-1.9
2,427,477	+		GFF2406	0.77	+1.7
2,427,477	+		GFF2406	0.77	-0.7
2,427,482	+		GFF2406	0.77	+0.9
2,427,482	+		GFF2406	0.77	+0.3
2,427,482	+		GFF2406	0.77	+1.4
2,427,482	+		GFF2406	0.77	+1.0
2,427,485	-		GFF2406	0.77	-1.4
2,427,485	-		GFF2406	0.77	+0.2
2,427,485	-		GFF2406	0.77	+0.9
2,427,485	-		GFF2406	0.77	-1.2
2,427,487	+		GFF2406	0.78	+1.0
2,427,487	+		GFF2406	0.78	+0.7
2,427,490	-		GFF2406	0.78	-0.1
2,427,490	-		GFF2406	0.78	-1.8
2,427,495	-		GFF2406	0.78	-0.2
2,427,501	+		GFF2406	0.78	-0.9
2,427,511	+		GFF2406	0.79	-0.8
2,427,519	-		GFF2406	0.79	-0.4
2,427,519	-		GFF2406	0.79	-0.3
2,427,519	-		GFF2406	0.79	-0.9
2,427,519	-		GFF2406	0.79	+0.2
2,427,529	-		GFF2406	0.80	+0.4
2,427,547	+		GFF2406	0.81	+0.8
2,427,559	-		GFF2406	0.82	+0.8
2,427,582	-		GFF2406	0.83	+0.1
2,427,592	+		GFF2406	0.84	-0.3
2,427,592	+		GFF2406	0.84	-0.3
2,427,600	-		GFF2406	0.84	+0.8
2,427,602	+		GFF2406	0.84	+0.0
2,427,602	+		GFF2406	0.84	+0.9
2,427,602	+		GFF2406	0.84	+0.8
2,427,602	+		GFF2406	0.84	-0.2
2,427,610	-		GFF2406	0.85	+0.2
2,427,610	-		GFF2406	0.85	+0.8
2,427,610	-		GFF2406	0.85	-1.1
2,427,610	-		GFF2406	0.85	-1.9
2,427,610	-		GFF2406	0.85	-2.0
2,427,629	+		GFF2406	0.86	-0.1
2,427,637	-		GFF2406	0.87	-1.2
2,427,643	-		GFF2406	0.87	-2.3
2,427,647	-		GFF2406	0.87	-0.8
2,427,652	-		GFF2406	0.87	+0.1
2,427,652	-		GFF2406	0.87	-2.2
2,427,663	+		GFF2406	0.88	-0.4
2,427,663	+		GFF2406	0.88	-0.4
2,427,663	+		GFF2406	0.88	+0.0
2,427,676	+		GFF2406	0.89	+0.8
2,427,684	-		GFF2406	0.89	+1.0
2,427,691	-		GFF2406	0.90	+1.0
2,427,722	+				-0.1
2,427,723	-				+0.6
2,427,742	+				+0.7
2,427,742	+				-1.7
2,427,742	+				-0.4
2,427,742	+				-0.2
2,427,742	+				+0.4
2,427,742	+				-1.4
2,427,743	-				-0.2
2,427,745	-				-1.8
2,427,745	-				-0.1
2,427,750	-				+0.3
2,427,750	-				-1.7
2,427,750	-				+0.3
2,427,771	+				-1.4
2,427,779	+				+1.4
2,427,779	-				-0.9
2,427,779	-				-0.8
2,427,779	-				-0.9
2,427,779	-				-1.8
2,427,779	-				+1.7
2,427,788	-				-0.6
2,427,810	+				-2.0
2,427,816	+				-0.9
2,427,816	-				-0.6
2,427,818	-				+0.7
2,427,823	-				-1.8
2,427,825	-				-2.4
2,427,858	+				-0.7
2,427,866	-				+1.0
2,427,866	-				+0.1
2,427,866	-				+0.2
2,427,866	-				+0.3
2,427,884	+				+0.0
2,427,892	-				-0.0
2,427,895	+				-0.3
2,427,909	-		GFF2407	0.11	-0.7
2,427,914	+		GFF2407	0.12	-0.7
2,427,914	+		GFF2407	0.12	+0.8
2,427,914	+		GFF2407	0.12	-0.5
2,427,916	+		GFF2407	0.12	+0.5
2,427,919	+		GFF2407	0.13	-0.7
2,427,924	-		GFF2407	0.13	-0.3
2,427,949	-		GFF2407	0.17	-0.4
2,427,950	+		GFF2407	0.17	+0.7
2,427,975	+		GFF2407	0.20	-0.3
2,427,991	-		GFF2407	0.22	+1.0
2,427,992	+		GFF2407	0.22	+0.2
2,428,005	+		GFF2407	0.24	+0.3
2,428,019	+		GFF2407	0.25	+0.9
2,428,038	+		GFF2407	0.28	+0.2
2,428,078	+		GFF2407	0.33	+1.0
2,428,078	+		GFF2407	0.33	+0.6
2,428,086	-		GFF2407	0.34	-0.2
2,428,123	+		GFF2407	0.39	-2.4
2,428,133	+		GFF2407	0.40	-2.2
2,428,133	-		GFF2407	0.40	-0.7
2,428,138	+		GFF2407	0.41	-1.3
2,428,138	+		GFF2407	0.41	-0.1
2,428,138	+		GFF2407	0.41	-2.3
2,428,151	-		GFF2407	0.42	-0.9
2,428,151	-		GFF2407	0.42	+0.7
2,428,156	+		GFF2407	0.43	-2.2
2,428,156	-		GFF2407	0.43	-0.4
2,428,163	+		GFF2407	0.44	-0.6
2,428,172	-		GFF2407	0.45	+0.1
2,428,180	+		GFF2407	0.46	+0.7
2,428,188	-		GFF2407	0.47	+0.4
2,428,188	-		GFF2407	0.47	-2.2
2,428,193	-		GFF2407	0.48	-0.7
2,428,223	+		GFF2407	0.51	+1.1
2,428,230	+		GFF2407	0.52	+1.3
2,428,230	+		GFF2407	0.52	+0.6
2,428,243	+		GFF2407	0.54	+1.1
2,428,243	+		GFF2407	0.54	+0.6
2,428,251	-		GFF2407	0.55	-0.5
2,428,253	+		GFF2407	0.55	-0.4
2,428,253	+		GFF2407	0.55	-0.7
2,428,253	+		GFF2407	0.55	+0.4
2,428,253	+		GFF2407	0.55	+0.5
2,428,253	+		GFF2407	0.55	-2.1
2,428,261	-		GFF2407	0.56	-0.4
2,428,261	-		GFF2407	0.56	+0.6
2,428,266	+		GFF2407	0.57	+0.7
2,428,291	+		GFF2407	0.60	-0.7
2,428,291	+		GFF2407	0.60	+0.1
2,428,291	+		GFF2407	0.60	-0.5
2,428,299	-		GFF2407	0.61	-1.4
2,428,312	+		GFF2407	0.63	+0.4
2,428,312	+		GFF2407	0.63	+0.4
2,428,341	-		GFF2407	0.66	+0.4
2,428,344	+		GFF2407	0.67	+0.7
2,428,352	-		GFF2407	0.68	-0.1
2,428,352	-		GFF2407	0.68	-1.0
2,428,352	-		GFF2407	0.68	+1.5
2,428,352	-		GFF2407	0.68	-2.0
2,428,352	-		GFF2407	0.68	+1.0
2,428,369	+		GFF2407	0.70	+0.5
2,428,370	-		GFF2407	0.70	-0.5
2,428,379	+		GFF2407	0.71	-0.3
2,428,379	+		GFF2407	0.71	+1.2
2,428,382	-		GFF2407	0.72	+1.1
2,428,387	-		GFF2407	0.72	-0.7
2,428,387	-		GFF2407	0.72	+0.2
2,428,387	-		GFF2407	0.72	+0.3
2,428,387	-		GFF2407	0.72	+0.3
2,428,387	-		GFF2407	0.72	+1.1
2,428,387	-		GFF2407	0.72	-0.4
2,428,397	-		GFF2407	0.74	-0.4
2,428,398	+		GFF2407	0.74	-0.7
2,428,400	+		GFF2407	0.74	+0.2
2,428,406	-		GFF2407	0.75	-0.7
2,428,412	-		GFF2407	0.75	+0.3
2,428,416	+		GFF2407	0.76	-0.2
2,428,421	+		GFF2407	0.77	-1.6
2,428,424	-		GFF2407	0.77	+0.2
2,428,460	+		GFF2407	0.82	+0.3
2,428,460	+		GFF2407	0.82	+0.5
2,428,467	-		GFF2407	0.82	+0.5
2,428,468	-		GFF2407	0.83	-0.5
2,428,478	+		GFF2407	0.84	-1.0
2,428,478	+		GFF2407	0.84	-0.3
2,428,486	-		GFF2407	0.85	-2.4
2,428,512	-		GFF2407	0.88	-0.4
2,428,528	+				+0.0
2,428,549	+				+0.6
2,428,562	+				+1.4
2,428,562	+				+0.6
2,428,589	-				+0.6
2,428,599	+				-2.1
2,428,599	+				-0.7
2,428,599	+				+0.7
2,428,599	+				-1.3
2,428,599	+				-0.4
2,428,607	-				+0.6
2,428,607	-				+0.9
2,428,607	-				-0.1
2,428,609	+				+0.7
2,428,611	+				+0.1
2,428,633	+				+0.5
2,428,641	-				+0.4
2,428,662	-				-0.4
2,428,673	-				+0.9
2,428,678	+				+0.8
2,428,689	+				-0.5
2,428,706	+				-1.2
2,428,706	+				+0.6
2,428,710	+				-2.2
2,428,712	-				-0.9
2,428,718	-				-0.5
2,428,732	-				+0.2
2,428,735	+				-0.9
2,428,743	-				-1.7
2,428,745	+				-0.3
2,428,800	+		GFF2408	0.12	-0.3
2,428,819	+		GFF2408	0.14	-0.7
2,428,819	+		GFF2408	0.14	-0.3
2,428,819	+		GFF2408	0.14	-0.9
2,428,819	+		GFF2408	0.14	-0.3
2,428,827	-		GFF2408	0.14	-0.9
2,428,827	-		GFF2408	0.14	+0.1
2,428,827	-		GFF2408	0.14	-0.4
2,428,827	-		GFF2408	0.14	+0.9
2,428,827	-		GFF2408	0.14	-0.6
2,428,827	-		GFF2408	0.14	+0.2
2,428,853	+		GFF2408	0.16	-1.6
2,428,853	+		GFF2408	0.16	+0.4
2,428,862	+		GFF2408	0.17	+0.3
2,428,865	+		GFF2408	0.17	+0.0
2,428,916	+		GFF2408	0.21	-0.3
2,428,932	+		GFF2408	0.23	+0.3
2,428,955	+		GFF2408	0.24	-0.7
2,428,971	+		GFF2408	0.26	+0.9
2,428,974	-		GFF2408	0.26	-2.5
2,428,981	-		GFF2408	0.27	+0.0
2,428,981	-		GFF2408	0.27	-2.2
2,428,985	+		GFF2408	0.27	-0.0
2,429,009	+		GFF2408	0.29	+0.3
2,429,011	+		GFF2408	0.29	-1.0
2,429,011	+		GFF2408	0.29	+0.9
2,429,011	+		GFF2408	0.29	-0.6
2,429,019	-		GFF2408	0.30	-0.3
2,429,019	-		GFF2408	0.30	-0.5
2,429,019	-		GFF2408	0.30	-0.6
2,429,019	-		GFF2408	0.30	+0.1
2,429,019	-		GFF2408	0.30	-0.8
2,429,021	+		GFF2408	0.30	+1.1
2,429,021	+		GFF2408	0.30	-1.4
2,429,021	+		GFF2408	0.30	+0.3
2,429,021	+		GFF2408	0.30	-0.6
2,429,029	+		GFF2408	0.30	+1.4
2,429,029	-		GFF2408	0.30	+0.6
2,429,029	-		GFF2408	0.30	-0.9
2,429,029	-		GFF2408	0.30	-0.2
2,429,034	+		GFF2408	0.31	-1.8
2,429,042	-		GFF2408	0.31	+1.9
2,429,047	-		GFF2408	0.32	-1.6
2,429,049	-		GFF2408	0.32	+0.6
2,429,069	+		GFF2408	0.34	-0.6
2,429,069	+		GFF2408	0.34	-1.0
2,429,069	+		GFF2408	0.34	-0.6
2,429,069	+		GFF2408	0.34	-2.4
2,429,069	+		GFF2408	0.34	-0.5
2,429,077	-		GFF2408	0.34	-1.4
2,429,077	-		GFF2408	0.34	-0.5
2,429,077	-		GFF2408	0.34	-1.0
2,429,121	-		GFF2408	0.38	-0.6
2,429,132	+		GFF2408	0.39	-1.7
2,429,132	+		GFF2408	0.39	-0.5
2,429,133	+		GFF2408	0.39	-0.0
2,429,133	+		GFF2408	0.39	+0.0
2,429,133	+		GFF2408	0.39	+0.2
2,429,140	-		GFF2408	0.39	-1.2
2,429,140	-		GFF2408	0.39	-2.2
2,429,141	-		GFF2408	0.39	-0.7
2,429,147	-		GFF2408	0.40	-0.3
2,429,147	-		GFF2408	0.40	-2.3
2,429,169	-		GFF2408	0.42	-0.1
2,429,198	-		GFF2408	0.44	-0.2
2,429,201	-		GFF2408	0.44	-0.6
2,429,205	+		GFF2408	0.45	-1.7
2,429,211	+		GFF2408	0.45	+1.4
2,429,215	+		GFF2408	0.45	-0.1
2,429,219	-		GFF2408	0.46	-0.9
2,429,220	+		GFF2408	0.46	+0.3
2,429,220	+		GFF2408	0.46	-1.4
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