Strain Fitness in Sphingobium sp. HT1-2 around GFF2403

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,421,942	-		GFF2401	0.12	-1.9
2,421,945	-		GFF2401	0.13	-1.5
2,422,173	-				+0.7
2,422,200	+				-0.6
2,422,205	+				+1.3
2,422,208	-				-0.5
2,422,210	+				-1.3
2,422,210	+				-1.4
2,422,215	+				-0.6
2,422,226	+				-1.6
2,422,226	+				+0.2
2,422,226	+				-0.5
2,422,226	+				+0.4
2,422,234	-				-0.8
2,422,236	+				-0.1
2,422,244	-				+0.7
2,422,244	-				-1.9
2,422,245	-				-0.8
2,422,263	-				-1.2
2,422,263	-				-1.3
2,422,281	-				+0.9
2,422,281	-				-1.7
2,422,283	+				+0.3
2,422,296	-				+0.3
2,422,301	-				-1.2
2,422,313	+				+0.3
2,422,313	+				-0.3
2,422,313	+				-1.5
2,422,345	+				+0.6
2,422,345	+				+0.8
2,422,385	-				-0.7
2,422,396	-				+0.0
2,422,405	+		GFF2402	0.12	-2.2
2,422,416	+		GFF2402	0.15	-0.9
2,422,424	-		GFF2402	0.17	+0.1
2,422,424	-		GFF2402	0.17	+0.3
2,422,438	+		GFF2402	0.20	+1.0
2,422,438	-		GFF2402	0.20	+0.3
2,422,446	-		GFF2402	0.22	+1.4
2,422,463	+		GFF2402	0.27	-1.7
2,422,464	-		GFF2402	0.27	-0.9
2,422,466	+		GFF2402	0.28	+1.0
2,422,484	-		GFF2402	0.32	+0.9
2,422,517	-		GFF2402	0.41	+1.9
2,422,527	+		GFF2402	0.43	-0.2
2,422,539	+		GFF2402	0.47	+0.4
2,422,545	-		GFF2402	0.48	-0.3
2,422,547	-		GFF2402	0.49	-0.5
2,422,548	-		GFF2402	0.49	+0.9
2,422,551	+		GFF2402	0.50	-1.0
2,422,551	+		GFF2402	0.50	-0.0
2,422,559	-		GFF2402	0.52	+0.4
2,422,559	-		GFF2402	0.52	+0.3
2,422,561	+		GFF2402	0.52	-0.7
2,422,571	-		GFF2402	0.55	+0.1
2,422,591	-		GFF2402	0.60	+0.4
2,422,598	-		GFF2402	0.62	+1.8
2,422,609	+		GFF2402	0.65	-0.6
2,422,619	+		GFF2402	0.67	-1.2
2,422,621	+		GFF2402	0.68	-1.7
2,422,623	+		GFF2402	0.68	-0.7
2,422,623	+		GFF2402	0.68	-1.2
2,422,631	-		GFF2402	0.71	-1.0
2,422,637	+		GFF2402	0.72	+0.4
2,422,641	-		GFF2402	0.73	+0.3
2,422,647	+		GFF2402	0.75	-0.6
2,422,647	+		GFF2402	0.75	-0.9
2,422,647	+		GFF2402	0.75	+0.6
2,422,650	-		GFF2402	0.76	-0.5
2,422,655	-		GFF2402	0.77	-0.3
2,422,655	-		GFF2402	0.77	-0.1
2,422,655	-		GFF2402	0.77	-0.1
2,422,655	-		GFF2402	0.77	-1.2
2,422,655	-		GFF2402	0.77	-0.4
2,422,655	-		GFF2402	0.77	-0.2
2,422,674	+		GFF2402	0.82	+0.2
2,422,674	+		GFF2402	0.82	+0.0
2,422,674	+		GFF2402	0.82	+0.0
2,422,674	+		GFF2402	0.82	+1.0
2,422,675	-		GFF2402	0.82	-0.7
2,422,675	-		GFF2402	0.82	-1.8
2,422,682	-		GFF2402	0.84	-2.6
2,422,682	-		GFF2402	0.84	+0.5
2,422,682	-		GFF2402	0.84	-1.7
2,422,682	-		GFF2402	0.84	-1.5
2,422,682	-		GFF2402	0.84	-1.6
2,422,682	-		GFF2402	0.84	-0.9
2,422,700	+		GFF2402	0.89	-0.5
2,422,708	-				+0.3
2,422,718	+				-0.9
2,422,723	+				+0.2
2,422,723	+				-1.3
2,422,723	+				-1.5
2,422,728	+				-1.5
2,422,728	+				-0.6
2,422,728	+				+0.3
2,422,736	-				-0.3
2,422,736	-				-0.5
2,422,736	-				-0.2
2,422,740	-				+2.0
2,422,745	-				-1.0
2,422,745	-				-1.7
2,422,824	+				-1.7
2,422,848	+				-1.3
2,422,849	+				+1.3
2,422,849	+				+0.0
2,422,849	+				-0.3
2,422,857	-				-0.4
2,422,857	-				-1.0
2,422,857	-				+0.8
2,422,858	+				+1.3
2,422,858	-				-1.9
2,422,859	+				-0.3
2,422,873	+				+0.4
2,422,874	+				-0.8
2,422,879	+				-0.1
2,422,884	+				-1.5
2,422,887	-				-1.5
2,422,895	+				-2.1
2,422,895	+				-0.4
2,422,895	+				+0.1
2,422,895	+				+0.4
2,422,895	+				-0.2
2,422,903	-				+1.3
2,422,912	-				-0.1
2,422,927	-				-0.2
2,422,927	-				-0.5
2,422,927	-				+0.4
2,422,927	-				-0.0
2,422,940	-				+0.2
2,422,945	-				-0.1
2,422,952	+				+0.8
2,422,952	+				+0.8
2,422,954	-				+0.6
2,422,960	-		GFF2403	0.11	+0.1
2,422,960	-		GFF2403	0.11	-1.0
2,422,960	-		GFF2403	0.11	-1.7
2,422,960	-		GFF2403	0.11	+1.0
2,422,960	-		GFF2403	0.11	+0.4
2,422,977	-		GFF2403	0.16	-0.8
2,423,026	-		GFF2403	0.31	-1.0
2,423,027	+		GFF2403	0.31	+0.2
2,423,048	-		GFF2403	0.38	-0.2
2,423,058	+		GFF2403	0.40	-1.0
2,423,066	-		GFF2403	0.43	-0.3
2,423,084	+		GFF2403	0.48	+0.3
2,423,092	-		GFF2403	0.51	-1.2
2,423,118	+		GFF2403	0.58	-0.7
2,423,128	+		GFF2403	0.61	+0.6
2,423,139	+		GFF2403	0.65	-0.1
2,423,139	+		GFF2403	0.65	-0.6
2,423,147	+		GFF2403	0.67	+0.9
2,423,147	+		GFF2403	0.67	-0.9
2,423,147	+		GFF2403	0.67	-0.7
2,423,147	+		GFF2403	0.67	-1.2
2,423,147	+		GFF2403	0.67	-1.6
2,423,147	+		GFF2403	0.67	-0.1
2,423,147	+		GFF2403	0.67	-0.3
2,423,152	-		GFF2403	0.68	+0.0
2,423,155	-		GFF2403	0.69	+0.3
2,423,155	-		GFF2403	0.69	+0.4
2,423,155	-		GFF2403	0.69	-1.4
2,423,155	-		GFF2403	0.69	+0.5
2,423,155	-		GFF2403	0.69	-0.4
2,423,155	-		GFF2403	0.69	+1.0
2,423,155	-		GFF2403	0.69	-0.1
2,423,155	-		GFF2403	0.69	-0.5
2,423,162	+		GFF2403	0.71	-0.4
2,423,162	+		GFF2403	0.71	-0.1
2,423,162	+		GFF2403	0.71	+0.8
2,423,170	-		GFF2403	0.74	-1.2
2,423,170	-		GFF2403	0.74	-1.2
2,423,185	-		GFF2403	0.78	-0.6
2,423,250	+				-2.2
2,423,253	+				-1.3
2,423,261	+				-1.4
2,423,275	+				-0.1
2,423,282	-				-0.5
2,423,283	-				-0.1
2,423,283	-				+0.9
2,423,283	-				+0.2
2,423,291	+				+0.2
2,423,315	-				-2.9
2,423,334	+				+1.0
2,423,352	+				-1.6
2,423,352	+				+0.3
2,423,352	+				-2.3
2,423,352	+				-0.2
2,423,352	+				-0.2
2,423,355	-				+0.3
2,423,360	-				-2.0
2,423,360	-				-0.7
2,423,360	-				-2.3
2,423,393	-				-2.1
2,423,393	-				-2.1
2,423,400	+				-1.2
2,423,408	-				-2.5
2,423,408	-				-2.6
2,423,473	+				-2.8
2,423,473	+				-1.5
2,423,473	+				-1.8
2,423,480	+				-2.8
2,423,481	-				-1.0
2,423,488	-				-1.8
2,423,546	-				-1.8
2,423,621	+		GFF2404	0.13	-1.8
2,423,625	-		GFF2404	0.13	-2.1
2,423,651	-		GFF2404	0.14	-3.1
2,423,688	+		GFF2404	0.16	-3.1
2,423,696	-		GFF2404	0.16	-3.3
2,423,714	+		GFF2404	0.17	-0.4
2,423,720	+		GFF2404	0.18	-1.9
2,423,720	+		GFF2404	0.18	-2.1
2,423,720	+		GFF2404	0.18	-0.5
2,423,727	+		GFF2404	0.18	-2.7
2,423,728	-		GFF2404	0.18	-2.1
2,423,730	-		GFF2404	0.18	-2.1
2,423,751	-		GFF2404	0.19	-1.2
2,423,753	+		GFF2404	0.19	-1.1
2,423,753	+		GFF2404	0.19	-1.6
2,423,758	+		GFF2404	0.19	-1.6
2,423,766	+		GFF2404	0.20	-1.4
2,423,771	+		GFF2404	0.20	-1.1
2,423,771	+		GFF2404	0.20	-1.7
2,423,771	+		GFF2404	0.20	-1.2
2,423,774	-		GFF2404	0.20	+0.0
2,423,779	-		GFF2404	0.20	-0.6
2,423,787	-		GFF2404	0.21	-1.7
2,423,792	-		GFF2404	0.21	-1.6
2,423,820	-		GFF2404	0.22	-2.6
2,423,841	+		GFF2404	0.23	-1.9
2,423,854	-		GFF2404	0.24	-2.1
2,423,864	-		GFF2404	0.24	-2.3
2,423,866	+		GFF2404	0.24	-1.2
2,423,871	+		GFF2404	0.25	-0.3
2,423,871	+		GFF2404	0.25	-1.2
2,423,876	+		GFF2404	0.25	-2.2
2,423,889	+		GFF2404	0.25	-1.9
2,423,897	-		GFF2404	0.26	-1.1
2,423,930	+		GFF2404	0.27	-2.2
2,423,963	-		GFF2404	0.29	-2.3
2,424,051	+		GFF2404	0.33	-1.7
2,424,051	+		GFF2404	0.33	-1.4
2,424,057	-		GFF2404	0.33	-2.6
2,424,097	+		GFF2404	0.35	-2.3
2,424,097	+		GFF2404	0.35	-1.9
2,424,110	-		GFF2404	0.35	-2.9
2,424,110	-		GFF2404	0.35	-3.0
2,424,120	-		GFF2404	0.36	-1.3
2,424,131	-		GFF2404	0.36	-1.3
2,424,137	+		GFF2404	0.37	-1.4
2,424,140	-		GFF2404	0.37	-1.5
2,424,140	-		GFF2404	0.37	-1.7
2,424,161	+		GFF2404	0.38	-2.3
2,424,161	-		GFF2404	0.38	-2.0
2,424,171	-		GFF2404	0.38	-1.4
2,424,198	+		GFF2404	0.40	-2.2
2,424,206	+		GFF2404	0.40	-2.7
2,424,206	+		GFF2404	0.40	-2.1
2,424,206	+		GFF2404	0.40	-3.0
2,424,206	+		GFF2404	0.40	-1.8
2,424,206	-		GFF2404	0.40	-0.6
2,424,206	-		GFF2404	0.40	-2.3
2,424,214	-		GFF2404	0.40	-2.4
2,424,214	-		GFF2404	0.40	-1.3
2,424,214	-		GFF2404	0.40	-2.2
2,424,250	+		GFF2404	0.42	-2.3
2,424,250	+		GFF2404	0.42	-1.1