Strain Fitness in Sphingobium sp. HT1-2 around GFF2380

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,401,903	+		GFF2379	0.41	-0.7
2,401,903	+		GFF2379	0.41	-1.2
2,401,906	-		GFF2379	0.41	-0.0
2,401,911	-		GFF2379	0.42	-0.1
2,401,913	+		GFF2379	0.42	-0.6
2,401,913	+		GFF2379	0.42	+0.7
2,401,913	+		GFF2379	0.42	+1.0
2,401,913	+		GFF2379	0.42	-0.7
2,401,913	+		GFF2379	0.42	-0.1
2,401,913	+		GFF2379	0.42	+0.0
2,401,915	+		GFF2379	0.42	+0.6
2,401,918	-		GFF2379	0.42	-0.1
2,401,919	-		GFF2379	0.42	-1.0
2,401,921	-		GFF2379	0.42	-0.6
2,401,921	-		GFF2379	0.42	-1.6
2,401,921	-		GFF2379	0.42	+0.1
2,401,921	-		GFF2379	0.42	-0.1
2,401,921	-		GFF2379	0.42	+0.2
2,401,933	+		GFF2379	0.43	+0.0
2,401,933	+		GFF2379	0.43	-0.6
2,401,941	-		GFF2379	0.43	-1.8
2,401,956	+		GFF2379	0.44	-1.0
2,401,958	+		GFF2379	0.44	-2.6
2,401,972	+		GFF2379	0.45	+0.3
2,401,982	+		GFF2379	0.46	-2.3
2,401,994	+		GFF2379	0.47	+0.1
2,402,009	+		GFF2379	0.48	-2.9
2,402,009	+		GFF2379	0.48	-0.1
2,402,014	+		GFF2379	0.48	+1.0
2,402,017	-		GFF2379	0.48	-0.5
2,402,017	-		GFF2379	0.48	-0.7
2,402,018	-		GFF2379	0.48	-0.6
2,402,019	+		GFF2379	0.48	+0.5
2,402,027	-		GFF2379	0.49	-0.6
2,402,027	-		GFF2379	0.49	+0.9
2,402,032	-		GFF2379	0.49	-0.1
2,402,091	-		GFF2379	0.53	-0.3
2,402,099	-		GFF2379	0.53	-0.7
2,402,156	-		GFF2379	0.57	-0.1
2,402,156	-		GFF2379	0.57	-0.8
2,402,157	-		GFF2379	0.57	+0.2
2,402,167	-		GFF2379	0.58	+0.6
2,402,167	-		GFF2379	0.58	+1.2
2,402,167	-		GFF2379	0.58	+0.5
2,402,170	+		GFF2379	0.58	-0.5
2,402,178	-		GFF2379	0.58	-0.9
2,402,196	-		GFF2379	0.59	-0.0
2,402,198	+		GFF2379	0.60	+0.2
2,402,200	+		GFF2379	0.60	+0.3
2,402,208	-		GFF2379	0.60	-2.1
2,402,215	+		GFF2379	0.61	-2.7
2,402,215	+		GFF2379	0.61	-0.5
2,402,215	+		GFF2379	0.61	-0.3
2,402,218	-		GFF2379	0.61	-2.0
2,402,223	-		GFF2379	0.61	+0.3
2,402,229	+		GFF2379	0.62	-0.2
2,402,284	-		GFF2379	0.65	-1.7
2,402,287	+		GFF2379	0.65	-0.5
2,402,289	-		GFF2379	0.65	+0.3
2,402,289	-		GFF2379	0.65	-1.2
2,402,289	-		GFF2379	0.65	-0.6
2,402,291	+		GFF2379	0.65	+0.4
2,402,295	-		GFF2379	0.66	-0.3
2,402,309	+		GFF2379	0.67	+1.5
2,402,317	-		GFF2379	0.67	+1.0
2,402,317	-		GFF2379	0.67	+1.3
2,402,328	+		GFF2379	0.68	-0.6
2,402,336	-		GFF2379	0.68	+1.3
2,402,336	-		GFF2379	0.68	-2.7
2,402,366	+		GFF2379	0.70	-0.4
2,402,393	+		GFF2379	0.72	-0.7
2,402,398	+		GFF2379	0.72	-0.1
2,402,398	+		GFF2379	0.72	-1.0
2,402,401	-		GFF2379	0.72	-0.2
2,402,401	-		GFF2379	0.72	+1.0
2,402,403	+		GFF2379	0.72	-2.7
2,402,403	+		GFF2379	0.72	+0.6
2,402,403	+		GFF2379	0.72	-0.3
2,402,403	+		GFF2379	0.72	-0.4
2,402,403	+		GFF2379	0.72	-0.6
2,402,409	+		GFF2379	0.73	-0.4
2,402,411	-		GFF2379	0.73	-0.4
2,402,411	-		GFF2379	0.73	+0.6
2,402,411	-		GFF2379	0.73	+0.8
2,402,411	-		GFF2379	0.73	+0.4
2,402,411	-		GFF2379	0.73	-0.1
2,402,411	-		GFF2379	0.73	+1.3
2,402,411	-		GFF2379	0.73	-0.8
2,402,411	-		GFF2379	0.73	-1.3
2,402,411	-		GFF2379	0.73	-1.4
2,402,411	-		GFF2379	0.73	-0.8
2,402,411	-		GFF2379	0.73	-0.6
2,402,411	-		GFF2379	0.73	-1.7
2,402,414	+		GFF2379	0.73	-0.7
2,402,426	+		GFF2379	0.74	-1.3
2,402,426	+		GFF2379	0.74	-2.8
2,402,426	+		GFF2379	0.74	+1.0
2,402,439	+		GFF2379	0.75	+0.7
2,402,439	+		GFF2379	0.75	-1.0
2,402,442	-		GFF2379	0.75	-1.6
2,402,446	+		GFF2379	0.75	-1.0
2,402,447	-		GFF2379	0.75	-1.6
2,402,481	-		GFF2379	0.77	+1.3
2,402,503	-		GFF2379	0.79	+0.3
2,402,503	-		GFF2379	0.79	+0.7
2,402,561	+		GFF2379	0.82	+0.3
2,402,575	+		GFF2379	0.83	+0.4
2,402,583	-		GFF2379	0.84	-1.3
2,402,583	-		GFF2379	0.84	-0.4
2,402,588	-		GFF2379	0.84	+0.0
2,402,592	+		GFF2379	0.84	-1.2
2,402,600	-		GFF2379	0.85	+0.3
2,402,606	+		GFF2379	0.85	-0.2
2,402,614	-		GFF2379	0.86	-1.9
2,402,614	-		GFF2379	0.86	+0.7
2,402,661	+		GFF2379	0.89	-1.3
2,402,661	+		GFF2379	0.89	+0.9
2,402,686	-				+0.7
2,402,693	-				-1.8
2,402,702	+				+0.7
2,402,708	-				-1.2
2,402,708	-				+0.8
2,402,729	-				-0.2
2,402,729	-				+0.6
2,402,736	+				+1.2
2,402,742	+				-2.5
2,402,792	+				-0.6
2,402,792	+				-1.9
2,402,792	+				-0.6
2,402,800	-				-0.1
2,402,805	-				+1.0
2,402,815	+				-0.9
2,402,858	+				-0.2
2,402,877	+				-0.7
2,402,903	+				-3.0
2,402,903	+				+0.2
2,402,903	+				+0.7
2,402,903	+				-0.1
2,402,911	+				+0.6
2,402,911	-				+0.3
2,402,911	-				+0.9
2,402,913	+				-0.2
2,402,918	+				+0.3
2,402,918	+				-1.0
2,402,923	+				-0.2
2,402,926	-				-0.1
2,402,926	-				-1.5
2,402,926	-				-1.2
2,402,926	-				-0.7
2,402,935	-				+0.6
2,402,955	+		GFF2380	0.11	-1.5
2,402,963	-		GFF2380	0.12	+0.2
2,402,989	-		GFF2380	0.15	+0.4
2,403,062	-		GFF2380	0.24	-0.8
2,403,074	+		GFF2380	0.26	+1.0
2,403,080	+		GFF2380	0.26	-1.0
2,403,080	+		GFF2380	0.26	-3.3
2,403,080	+		GFF2380	0.26	-0.7
2,403,080	+		GFF2380	0.26	+0.5
2,403,080	+		GFF2380	0.26	-2.0
2,403,080	+		GFF2380	0.26	-0.1
2,403,080	+		GFF2380	0.26	-1.7
2,403,080	+		GFF2380	0.26	-1.9
2,403,080	+		GFF2380	0.26	+0.3
2,403,082	-		GFF2380	0.27	-1.8
2,403,088	-		GFF2380	0.28	+0.4
2,403,088	-		GFF2380	0.28	-2.1
2,403,088	-		GFF2380	0.28	-0.6
2,403,088	-		GFF2380	0.28	+0.4
2,403,103	-		GFF2380	0.29	-0.1
2,403,106	+		GFF2380	0.30	-0.0
2,403,114	-		GFF2380	0.31	-0.6
2,403,132	+		GFF2380	0.33	-1.5
2,403,132	+		GFF2380	0.33	-0.3
2,403,140	-		GFF2380	0.34	+0.7
2,403,140	-		GFF2380	0.34	+0.8
2,403,140	-		GFF2380	0.34	-0.7
2,403,140	-		GFF2380	0.34	+1.1
2,403,140	-		GFF2380	0.34	+0.1
2,403,140	-		GFF2380	0.34	-0.1
2,403,140	-		GFF2380	0.34	+0.8
2,403,181	-		GFF2380	0.39	+0.3
2,403,204	+		GFF2380	0.42	+0.7
2,403,225	+		GFF2380	0.45	+0.1
2,403,234	-		GFF2380	0.46	-1.5
2,403,258	+		GFF2380	0.49	-1.7
2,403,308	+		GFF2380	0.55	-1.6
2,403,348	+		GFF2380	0.60	-0.1
2,403,356	-		GFF2380	0.61	-0.0
2,403,388	-		GFF2380	0.66	-0.8
2,403,391	+		GFF2380	0.66	+0.0
2,403,399	-		GFF2380	0.67	+0.6
2,403,426	+		GFF2380	0.70	+0.2
2,403,434	-		GFF2380	0.71	-1.7
2,403,434	-		GFF2380	0.71	+0.8
2,403,436	+		GFF2380	0.72	-0.6
2,403,449	+		GFF2380	0.73	-1.1
2,403,475	+		GFF2380	0.77	+0.3
2,403,497	-		GFF2380	0.79	-1.3
2,403,505	+		GFF2380	0.80	+1.3
2,403,529	+		GFF2380	0.83	-0.3
2,403,533	-		GFF2380	0.84	+0.5
2,403,537	-		GFF2380	0.84	-1.5
2,403,537	-		GFF2380	0.84	-1.1
2,403,537	-		GFF2380	0.84	+0.1
2,403,555	+		GFF2380	0.87	+0.4
2,403,555	+		GFF2380	0.87	-2.2
2,403,561	-		GFF2380	0.87	-0.9
2,403,576	+		GFF2380	0.89	-0.1
2,403,579	+		GFF2380	0.90	-1.3
2,403,581	+				-0.5
2,403,585	+				+0.2
2,403,586	+				-2.7
2,403,587	-				+0.5
2,403,603	-				+1.2
2,403,605	-				-2.7
2,403,608	+				-0.2
2,403,614	-				+0.3
2,403,615	-				-0.2
2,403,617	+				-0.3
2,403,618	+				-2.9
2,403,653	+				-0.4
2,403,653	+				-2.2
2,403,653	+				+0.2
2,403,661	-				+1.0
2,403,661	-				-0.9
2,403,661	-				-1.3
2,403,663	+				-2.4
2,403,671	-				+1.1
2,403,671	-				+1.5
2,403,671	-				-1.8
2,403,671	-				-0.6
2,403,718	+				+0.9
2,403,718	+				-1.4
2,403,718	+				-1.4
2,403,718	+				+1.8
2,403,718	+				+0.1
2,403,726	-				-1.7
2,403,726	-				-0.3
2,403,726	-				+0.7
2,403,726	-				-0.5
2,403,726	-				+1.1
2,403,726	-				+0.6
2,403,743	+				-1.2
2,403,753	+				+0.3
2,403,753	+				-2.6
2,403,761	-		GFF2381	0.11	+0.0
2,403,768	+		GFF2381	0.12	+0.3
2,403,768	+		GFF2381	0.12	-0.7
2,403,768	+		GFF2381	0.12	+0.2
2,403,770	+		GFF2381	0.13	-0.1
2,403,770	+		GFF2381	0.13	+0.6
2,403,770	+		GFF2381	0.13	-1.3
2,403,773	-		GFF2381	0.13	-0.9
2,403,776	-		GFF2381	0.14	+0.7
2,403,778	-		GFF2381	0.14	-1.0
2,403,778	-		GFF2381	0.14	+0.4
2,403,783	-		GFF2381	0.15	+0.9
2,403,784	+		GFF2381	0.15	-0.2
2,403,786	-		GFF2381	0.15	+0.3
2,403,789	+		GFF2381	0.16	+1.1
2,403,794	+		GFF2381	0.17	+0.4
2,403,802	-		GFF2381	0.18	-0.1
2,403,815	+		GFF2381	0.20	-0.6
2,403,815	+		GFF2381	0.20	-0.7
2,403,815	+		GFF2381	0.20	-1.7
2,403,820	+		GFF2381	0.21	-0.4
2,403,820	+		GFF2381	0.21	+0.4
2,403,823	-		GFF2381	0.21	+0.3
2,403,823	-		GFF2381	0.21	-1.7
2,403,825	+		GFF2381	0.22	-1.2
2,403,828	-		GFF2381	0.22	+1.0
2,403,893	+		GFF2381	0.33	+0.2
2,403,893	+		GFF2381	0.33	-0.6
2,403,893	+		GFF2381	0.33	+0.2
2,403,904	+		GFF2381	0.35	+0.8
2,403,956	+		GFF2381	0.43	-0.3
2,403,956	+		GFF2381	0.43	-0.0
2,403,956	+		GFF2381	0.43	-0.9
2,403,957	+		GFF2381	0.44	+1.0
2,403,957	+		GFF2381	0.44	+0.0
2,403,957	+		GFF2381	0.44	+0.1
2,403,957	+		GFF2381	0.44	+0.7
2,403,957	+		GFF2381	0.44	+0.7
2,403,964	-		GFF2381	0.45	+0.1
2,403,964	-		GFF2381	0.45	-0.4
2,403,964	-		GFF2381	0.45	+1.0
2,403,964	-		GFF2381	0.45	-0.2
2,403,964	-		GFF2381	0.45	-1.6
2,403,965	-		GFF2381	0.45	+0.2
2,403,977	+		GFF2381	0.47	-0.3
2,404,029	+		GFF2381	0.55	-0.7
2,404,071	+		GFF2381	0.62	-0.4
2,404,071	+		GFF2381	0.62	+0.4
2,404,106	-		GFF2381	0.68	-1.5
2,404,113	+		GFF2381	0.69	-0.1
2,404,115	+		GFF2381	0.70	-2.5
2,404,116	-		GFF2381	0.70	-3.2
2,404,121	-		GFF2381	0.71	-1.2
2,404,121	-		GFF2381	0.71	-0.7
2,404,121	-		GFF2381	0.71	-0.3
2,404,136	+		GFF2381	0.73	-0.6
2,404,140	+		GFF2381	0.74	+0.4
2,404,144	-		GFF2381	0.74	+0.5
2,404,148	-		GFF2381	0.75	+0.3
2,404,154	-		GFF2381	0.76	+0.3
2,404,205	-		GFF2381	0.84	+0.4
2,404,214	+		GFF2381	0.86	-0.5
2,404,214	+		GFF2381	0.86	-0.6
2,404,227	+		GFF2381	0.88	-1.3
2,404,231	+		GFF2381	0.89	+0.7
2,404,233	+		GFF2381	0.89	-0.7
2,404,280	+				+0.3
2,404,291	+				+0.6
2,404,293	+				-0.4
2,404,301	-				-0.8
2,404,306	-				-1.5
2,404,311	-				+0.3
2,404,332	+				-1.4
2,404,332	+				-1.2
2,404,336	+				+0.3
2,404,371	+				+0.0
2,404,398	+				+1.8
2,404,399	-				-0.4
2,404,417	+				+0.1
2,404,425	-				-0.2
2,404,425	-				+0.4
2,404,425	-				-1.4
2,404,462	+				+0.1
2,404,490	+		GFF2382	0.11	-0.3
2,404,497	+		GFF2382	0.12	+0.4
2,404,497	+		GFF2382	0.12	-0.3
2,404,502	+		GFF2382	0.12	+0.4
2,404,513	+		GFF2382	0.13	+0.9
2,404,514	+		GFF2382	0.14	-1.7
2,404,516	-		GFF2382	0.14	-2.5
2,404,519	+		GFF2382	0.14	+0.7
2,404,521	-		GFF2382	0.14	-2.1
2,404,521	-		GFF2382	0.14	+0.5
2,404,522	-		GFF2382	0.14	-1.3
2,404,532	-		GFF2382	0.16	+0.3
2,404,537	+		GFF2382	0.16	-0.7
2,404,537	+		GFF2382	0.16	+0.3
2,404,537	+		GFF2382	0.16	+1.1
2,404,537	+		GFF2382	0.16	+0.2
2,404,537	+		GFF2382	0.16	+0.7
2,404,542	+		GFF2382	0.17	-1.2
2,404,544	-		GFF2382	0.17	-1.2
2,404,545	-		GFF2382	0.17	-0.1
2,404,545	-		GFF2382	0.17	-0.4
2,404,547	+		GFF2382	0.17	-1.7
2,404,547	+		GFF2382	0.17	-0.2
2,404,563	+		GFF2382	0.19	-2.8
2,404,571	-		GFF2382	0.20	-0.3
2,404,574	+		GFF2382	0.20	-0.4
2,404,581	-		GFF2382	0.21	-2.2
2,404,621	+		GFF2382	0.26	-1.1
2,404,627	-		GFF2382	0.26	+0.7
2,404,633	+		GFF2382	0.27	+0.8
2,404,633	+		GFF2382	0.27	-0.7
2,404,633	+		GFF2382	0.27	-1.0
2,404,633	+		GFF2382	0.27	-0.3
2,404,633	+		GFF2382	0.27	+1.1
2,404,633	+		GFF2382	0.27	+1.4
2,404,633	+		GFF2382	0.27	-1.7
2,404,633	+		GFF2382	0.27	-0.2
2,404,633	+		GFF2382	0.27	-0.1
2,404,633	+		GFF2382	0.27	+0.2
2,404,633	+		GFF2382	0.27	-0.2
2,404,641	+		GFF2382	0.28	-2.3
2,404,641	-		GFF2382	0.28	+1.4
2,404,641	-		GFF2382	0.28	-1.6
2,404,641	-		GFF2382	0.28	-0.7
2,404,641	-		GFF2382	0.28	-0.5
2,404,641	-		GFF2382	0.28	+0.5
2,404,641	-		GFF2382	0.28	+1.1
2,404,641	-		GFF2382	0.28	-0.7
2,404,641	-		GFF2382	0.28	-0.6
2,404,641	-		GFF2382	0.28	+1.2
2,404,649	-		GFF2382	0.29	-1.6
2,404,657	-		GFF2382	0.30	-2.1