Strain Fitness in Sphingobium sp. HT1-2 around GFF2323

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,347,399	+		GFF2322	0.42	+0.1
2,347,401	+		GFF2322	0.42	-0.1
2,347,450	+		GFF2322	0.45	-1.8
2,347,450	+		GFF2322	0.45	-2.0
2,347,561	+		GFF2322	0.53	+0.3
2,347,571	+		GFF2322	0.53	-1.8
2,347,624	+		GFF2322	0.57	-0.5
2,347,792	-		GFF2322	0.68	-1.6
2,347,800	-		GFF2322	0.68	-1.9
2,347,822	-		GFF2322	0.69	-1.6
2,347,823	-		GFF2322	0.69	-2.2
2,348,131	+		GFF2322	0.89	-1.2
2,348,139	-		GFF2322	0.90	-0.6
2,348,139	-		GFF2322	0.90	-0.8
2,348,351	-				-1.6
2,348,382	-				-0.3
2,348,386	-				-0.3
2,348,452	-		GFF2323	0.13	-1.2
2,348,478	+		GFF2323	0.15	-2.0
2,348,478	+		GFF2323	0.15	-1.0
2,348,478	+		GFF2323	0.15	+0.3
2,348,486	-		GFF2323	0.16	-0.8
2,348,486	-		GFF2323	0.16	-0.6
2,348,486	-		GFF2323	0.16	-0.2
2,348,486	-		GFF2323	0.16	-1.1
2,348,501	-		GFF2323	0.17	-1.3
2,348,516	-		GFF2323	0.19	+0.5
2,348,521	-		GFF2323	0.19	+0.7
2,348,531	-		GFF2323	0.20	+1.4
2,348,541	-		GFF2323	0.21	-0.2
2,348,569	+		GFF2323	0.23	-1.2
2,348,574	+		GFF2323	0.24	-0.3
2,348,582	-		GFF2323	0.25	-0.2
2,348,582	-		GFF2323	0.25	-0.2
2,348,582	-		GFF2323	0.25	-1.2
2,348,588	-		GFF2323	0.25	+1.6
2,348,650	-		GFF2323	0.31	+0.3
2,348,739	+		GFF2323	0.38	-1.2
2,348,762	+		GFF2323	0.40	-2.4
2,348,770	-		GFF2323	0.41	+0.2
2,348,770	-		GFF2323	0.41	-0.3
2,348,786	+		GFF2323	0.43	+0.9
2,348,821	+		GFF2323	0.46	-1.6
2,348,826	+		GFF2323	0.46	-0.6
2,348,831	+		GFF2323	0.47	+0.1
2,348,839	-		GFF2323	0.47	-1.5
2,348,839	-		GFF2323	0.47	-0.0
2,348,839	-		GFF2323	0.47	+0.0
2,348,839	-		GFF2323	0.47	-1.2
2,348,841	-		GFF2323	0.47	+0.9
2,348,852	+		GFF2323	0.48	-1.1
2,348,852	+		GFF2323	0.48	+0.8
2,348,870	-		GFF2323	0.50	+0.1
2,348,894	-		GFF2323	0.52	-1.6
2,348,894	-		GFF2323	0.52	-1.8
2,348,905	-		GFF2323	0.53	-0.6
2,348,997	+		GFF2323	0.61	-0.3
2,349,005	-		GFF2323	0.62	-1.1
2,349,005	-		GFF2323	0.62	-1.7
2,349,023	-		GFF2323	0.64	-0.7
2,349,043	-		GFF2323	0.65	+0.7
2,349,044	+		GFF2323	0.65	-0.0
2,349,054	+		GFF2323	0.66	+0.4
2,349,145	-		GFF2323	0.74	-1.3
2,349,167	+		GFF2323	0.76	-1.8
2,349,169	-		GFF2323	0.76	+0.8
2,349,169	-		GFF2323	0.76	-0.1
2,349,171	+		GFF2323	0.77	+0.5
2,349,179	+		GFF2323	0.77	-2.8
2,349,183	-		GFF2323	0.78	-1.2
2,349,187	-		GFF2323	0.78	+0.7
2,349,194	-		GFF2323	0.79	-1.3
2,349,196	-		GFF2323	0.79	-1.5
2,349,204	-		GFF2323	0.80	-1.3
2,349,204	-		GFF2323	0.80	+0.0
2,349,229	+		GFF2323	0.82	-0.5
2,349,247	+		GFF2323	0.83	-0.6
2,349,247	+		GFF2323	0.83	-0.2
2,349,255	-		GFF2323	0.84	-0.9
2,349,255	-		GFF2323	0.84	-1.2
2,349,277	-		GFF2323	0.86	-0.1
2,349,290	-		GFF2323	0.87	-0.4
2,349,329	+				-1.6
2,349,337	-				-1.8
2,349,363	+				-0.2
2,349,363	+				-1.6
2,349,371	-				-0.8
2,349,387	-				+0.0
2,349,393	-				-1.3
2,349,418	+				-1.2
2,349,424	+				-1.7
2,349,442	+				-1.8
2,349,465	+				+0.7
2,349,465	+				-1.1
2,349,465	+				+0.5
2,349,473	-				+0.2
2,349,473	-				-1.4
2,349,473	-				-0.6
2,349,473	-				+0.6
2,349,473	-				-1.0
2,349,475	-				+0.2
2,349,486	+				+0.1
2,349,513	+		GFF2324	0.10	-0.9
2,349,521	-		GFF2324	0.15	-1.8
2,349,521	-		GFF2324	0.15	-0.6
2,349,521	-		GFF2324	0.15	+0.7
2,349,523	+		GFF2324	0.16	-0.3
2,349,553	-		GFF2324	0.32	-0.1
2,349,553	-		GFF2324	0.32	+0.4
2,349,582	-		GFF2324	0.48	-1.8
2,349,595	+		GFF2324	0.55	+0.0
2,349,596	-		GFF2324	0.56	-0.1
2,349,603	+		GFF2324	0.60	+1.8
2,349,603	+		GFF2324	0.60	-0.8
2,349,603	+		GFF2324	0.60	-2.0
2,349,603	+		GFF2324	0.60	-0.5
2,349,603	+		GFF2324	0.60	-1.0
2,349,603	+		GFF2324	0.60	-1.9
2,349,603	+		GFF2324	0.60	-1.7
2,349,603	+		GFF2324	0.60	-0.9
2,349,603	+		GFF2324	0.60	-0.5
2,349,603	+		GFF2324	0.60	-0.6
2,349,603	+		GFF2324	0.60	-1.8
2,349,603	+		GFF2324	0.60	+0.9
2,349,603	+		GFF2324	0.60	-0.1
2,349,603	+		GFF2324	0.60	+0.1
2,349,603	+		GFF2324	0.60	-2.3
2,349,603	+		GFF2324	0.60	+0.2
2,349,603	+		GFF2324	0.60	-1.5
2,349,603	+		GFF2324	0.60	+0.6
2,349,603	+		GFF2324	0.60	+0.2
2,349,603	+		GFF2324	0.60	+0.0
2,349,603	+		GFF2324	0.60	-1.1
2,349,603	+		GFF2324	0.60	+0.4
2,349,603	+		GFF2324	0.60	-0.5
2,349,603	+		GFF2324	0.60	+1.6
2,349,603	+		GFF2324	0.60	-0.0
2,349,603	+		GFF2324	0.60	-1.5
2,349,603	+		GFF2324	0.60	-0.5
2,349,603	+		GFF2324	0.60	-0.5
2,349,603	+		GFF2324	0.60	-0.6
2,349,603	+		GFF2324	0.60	-1.9
2,349,603	-		GFF2324	0.60	+0.4
2,349,603	-		GFF2324	0.60	-1.5
2,349,609	+		GFF2324	0.63	-0.0
2,349,610	-		GFF2324	0.63	-0.5
2,349,611	-		GFF2324	0.64	-0.6
2,349,611	-		GFF2324	0.64	-0.7
2,349,611	-		GFF2324	0.64	-0.2
2,349,611	-		GFF2324	0.64	-0.8
2,349,611	-		GFF2324	0.64	-0.9
2,349,611	-		GFF2324	0.64	-0.2
2,349,611	-		GFF2324	0.64	-2.0
2,349,611	-		GFF2324	0.64	-0.4
2,349,611	-		GFF2324	0.64	+0.4
2,349,611	-		GFF2324	0.64	+0.5
2,349,611	-		GFF2324	0.64	+0.4
2,349,611	-		GFF2324	0.64	-0.0
2,349,611	-		GFF2324	0.64	-1.5
2,349,611	-		GFF2324	0.64	+0.1
2,349,611	-		GFF2324	0.64	+0.6
2,349,611	-		GFF2324	0.64	+1.1
2,349,611	-		GFF2324	0.64	+1.4
2,349,611	-		GFF2324	0.64	-0.5
2,349,611	-		GFF2324	0.64	-1.5
2,349,611	-		GFF2324	0.64	+0.6
2,349,611	-		GFF2324	0.64	-0.3
2,349,611	-		GFF2324	0.64	+0.1
2,349,611	-		GFF2324	0.64	-0.3
2,349,611	-		GFF2324	0.64	+0.8
2,349,611	-		GFF2324	0.64	+0.9
2,349,611	-		GFF2324	0.64	+1.0
2,349,611	-		GFF2324	0.64	+1.2
2,349,611	-		GFF2324	0.64	-0.5
2,349,611	-		GFF2324	0.64	-0.5
2,349,611	-		GFF2324	0.64	-0.6
2,349,611	-		GFF2324	0.64	-0.1
2,349,611	-		GFF2324	0.64	+0.7
2,349,611	-		GFF2324	0.64	-0.2
2,349,611	-		GFF2324	0.64	+0.8
2,349,611	-		GFF2324	0.64	-0.2
2,349,617	-		GFF2324	0.67	-0.7
2,349,617	-		GFF2324	0.67	+0.4
2,349,619	+		GFF2324	0.68	-1.1
2,349,622	-		GFF2324	0.70	+2.1
2,349,631	+		GFF2324	0.75	-0.0
2,349,633	-		GFF2324	0.76	-1.3
2,349,665	+				-0.6
2,349,706	-				+0.2
2,349,708	+				+0.0
2,349,716	-				-0.4
2,349,716	-				-2.0
2,349,869	-				-0.2
2,349,929	+				-2.1
2,349,929	+				-0.6
2,349,929	+				+0.7
2,349,937	-				-0.8
2,349,937	-				+0.8
2,349,937	-				-0.3
2,349,939	+				-0.1
2,349,945	-				-1.8
2,349,947	-				+1.7
2,349,962	-				-2.8
2,350,013	-		GFF2325	0.11	-0.3
2,350,020	-		GFF2325	0.12	-0.8
2,350,021	+		GFF2325	0.12	+0.2
2,350,021	+		GFF2325	0.12	-0.1
2,350,021	+		GFF2325	0.12	+0.4
2,350,021	+		GFF2325	0.12	-2.3
2,350,021	+		GFF2325	0.12	-1.2
2,350,027	-		GFF2325	0.12	-1.8
2,350,029	+		GFF2325	0.12	-0.5
2,350,029	-		GFF2325	0.12	+0.8
2,350,029	-		GFF2325	0.12	-0.1
2,350,029	-		GFF2325	0.12	+0.9
2,350,029	-		GFF2325	0.12	-0.3
2,350,036	+		GFF2325	0.13	+1.0
2,350,037	-		GFF2325	0.13	+0.4
2,350,040	+		GFF2325	0.14	-2.0
2,350,108	-		GFF2325	0.21	+0.3
2,350,123	+		GFF2325	0.23	-1.6
2,350,125	+		GFF2325	0.23	-1.0
2,350,140	+		GFF2325	0.24	+0.2
2,350,150	+		GFF2325	0.25	+0.7
2,350,150	+		GFF2325	0.25	+0.7
2,350,155	+		GFF2325	0.26	+0.6
2,350,158	-		GFF2325	0.26	-0.5
2,350,172	+		GFF2325	0.28	-0.6
2,350,198	+		GFF2325	0.31	-0.1
2,350,206	-		GFF2325	0.31	+1.6
2,350,206	-		GFF2325	0.31	-0.8
2,350,221	-		GFF2325	0.33	-3.1
2,350,222	+		GFF2325	0.33	+2.0
2,350,238	-		GFF2325	0.35	+0.2
2,350,238	-		GFF2325	0.35	-0.7
2,350,249	+		GFF2325	0.36	-0.0
2,350,249	+		GFF2325	0.36	-0.5
2,350,257	-		GFF2325	0.37	-2.6
2,350,257	-		GFF2325	0.37	-0.3
2,350,284	+		GFF2325	0.40	-1.0
2,350,288	+		GFF2325	0.40	-2.7
2,350,294	+		GFF2325	0.41	+0.1
2,350,296	-		GFF2325	0.41	-1.5
2,350,303	+		GFF2325	0.42	+0.4
2,350,306	-		GFF2325	0.42	-0.8
2,350,306	-		GFF2325	0.42	-0.0
2,350,306	-		GFF2325	0.42	-1.1
2,350,316	-		GFF2325	0.43	+1.4
2,350,363	-		GFF2325	0.48	+0.7
2,350,365	-		GFF2325	0.48	+1.3
2,350,379	+		GFF2325	0.50	-0.7
2,350,383	-		GFF2325	0.50	+1.8
2,350,385	+		GFF2325	0.51	+0.4
2,350,388	-		GFF2325	0.51	+0.1
2,350,393	-		GFF2325	0.51	-0.6
2,350,393	-		GFF2325	0.51	-0.8
2,350,393	-		GFF2325	0.51	+1.4
2,350,418	+		GFF2325	0.54	+0.1
2,350,418	+		GFF2325	0.54	-0.2
2,350,423	+		GFF2325	0.55	+0.8
2,350,423	+		GFF2325	0.55	+1.0
2,350,431	-		GFF2325	0.55	+1.8
2,350,431	-		GFF2325	0.55	+0.1