Strain Fitness in Sphingobium sp. HT1-2 around GFF232

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF231 and GFF232 are separated by 55 nucleotidesGFF232 and GFF233 are separated by 121 nucleotides GFF231 - Autolysin sensor kinase (EC 2.7.3.-), at 235,344 to 236,450 GFF231 GFF232 - Transcriptional regulator, HxlR family, at 236,506 to 236,988 GFF232 GFF233 - 'Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase (EC 3.1.7.2) / GTP pyrophosphokinase (EC 2.7.6.5), (p)ppGpp synthetase II' transl_table=11, at 237,110 to 239,215 GFF233 Position (kb) 236 237Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 236.430 kb on - strandat 236.430 kb on - strandat 236.430 kb on - strandat 236.430 kb on - strandat 236.437 kb on + strandat 236.444 kb on - strandat 236.467 kb on - strandat 236.472 kb on - strandat 236.524 kb on + strandat 236.524 kb on + strandat 236.538 kb on + strandat 236.544 kb on - strandat 236.558 kb on + strand, within GFF232at 236.558 kb on + strand, within GFF232at 236.566 kb on - strand, within GFF232at 236.566 kb on - strand, within GFF232at 236.566 kb on - strand, within GFF232at 236.577 kb on + strand, within GFF232at 236.577 kb on + strand, within GFF232at 236.577 kb on + strand, within GFF232at 236.577 kb on + strand, within GFF232at 236.585 kb on - strand, within GFF232at 236.585 kb on - strand, within GFF232at 236.590 kb on + strand, within GFF232at 236.590 kb on + strand, within GFF232at 236.590 kb on + strand, within GFF232at 236.598 kb on - strand, within GFF232at 236.620 kb on + strand, within GFF232at 236.620 kb on + strand, within GFF232at 236.628 kb on - strand, within GFF232at 236.638 kb on - strand, within GFF232at 236.652 kb on + strand, within GFF232at 236.652 kb on - strand, within GFF232at 236.654 kb on + strand, within GFF232at 236.674 kb on + strand, within GFF232at 236.716 kb on + strand, within GFF232at 236.721 kb on + strand, within GFF232at 236.753 kb on + strand, within GFF232at 236.761 kb on - strand, within GFF232at 236.785 kb on - strand, within GFF232at 236.785 kb on - strand, within GFF232at 236.785 kb on - strand, within GFF232at 236.832 kb on - strand, within GFF232at 236.863 kb on - strand, within GFF232at 236.901 kb on + strand, within GFF232at 236.902 kb on + strand, within GFF232at 236.912 kb on + strand, within GFF232at 236.915 kb on - strand, within GFF232at 236.915 kb on - strand, within GFF232at 236.920 kb on - strand, within GFF232at 236.924 kb on + strand, within GFF232at 236.925 kb on - strand, within GFF232at 236.925 kb on - strand, within GFF232at 236.925 kb on - strand, within GFF232at 236.932 kb on - strand, within GFF232at 236.932 kb on - strand, within GFF232at 236.958 kb on + strandat 236.964 kb on - strandat 237.032 kb on + strandat 237.043 kb on + strandat 237.051 kb on - strandat 237.080 kb on + strandat 237.115 kb on + strandat 237.116 kb on + strandat 237.120 kb on + strandat 237.128 kb on - strandat 237.139 kb on + strandat 237.161 kb on - strandat 237.162 kb on + strandat 237.183 kb on - strandat 237.200 kb on + strandat 237.208 kb on - strandat 237.238 kb on + strandat 237.238 kb on + strandat 237.243 kb on + strandat 237.263 kb on + strandat 237.267 kb on + strandat 237.267 kb on + strandat 237.275 kb on - strandat 237.275 kb on - strandat 237.280 kb on - strandat 237.312 kb on + strandat 237.319 kb on + strandat 237.322 kb on + strand, within GFF233at 237.346 kb on + strand, within GFF233at 237.351 kb on + strand, within GFF233at 237.351 kb on + strand, within GFF233at 237.351 kb on + strand, within GFF233at 237.351 kb on + strand, within GFF233at 237.351 kb on + strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.359 kb on - strand, within GFF233at 237.383 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.418 kb on + strand, within GFF233at 237.424 kb on + strand, within GFF233at 237.424 kb on - strand, within GFF233at 237.426 kb on - strand, within GFF233at 237.426 kb on - strand, within GFF233at 237.426 kb on - strand, within GFF233at 237.432 kb on - strand, within GFF233at 237.432 kb on - strand, within GFF233at 237.432 kb on - strand, within GFF233at 237.471 kb on + strand, within GFF233at 237.472 kb on + strand, within GFF233at 237.527 kb on + strand, within GFF233at 237.546 kb on + strand, within GFF233at 237.546 kb on + strand, within GFF233at 237.556 kb on - strand, within GFF233at 237.564 kb on - strand, within GFF233at 237.566 kb on + strand, within GFF233at 237.604 kb on + strand, within GFF233at 237.604 kb on + strand, within GFF233at 237.612 kb on - strand, within GFF233at 237.612 kb on - strand, within GFF233at 237.635 kb on + strand, within GFF233at 237.637 kb on + strand, within GFF233at 237.654 kb on + strand, within GFF233at 237.673 kb on - strand, within GFF233at 237.692 kb on + strand, within GFF233at 237.692 kb on + strand, within GFF233at 237.692 kb on + strand, within GFF233at 237.692 kb on + strand, within GFF233at 237.692 kb on + strand, within GFF233at 237.692 kb on + strand, within GFF233at 237.692 kb on + strand, within GFF233at 237.692 kb on + strand, within GFF233at 237.693 kb on - strand, within GFF233at 237.700 kb on + strand, within GFF233at 237.700 kb on - strand, within GFF233at 237.700 kb on - strand, within GFF233at 237.700 kb on - strand, within GFF233at 237.700 kb on - strand, within GFF233at 237.700 kb on - strand, within GFF233at 237.700 kb on - strand, within GFF233at 237.700 kb on - strand, within GFF233at 237.700 kb on - strand, within GFF233at 237.700 kb on - strand, within GFF233at 237.710 kb on - strand, within GFF233at 237.722 kb on - strand, within GFF233at 237.724 kb on + strand, within GFF233at 237.724 kb on + strand, within GFF233at 237.735 kb on - strand, within GFF233at 237.735 kb on - strand, within GFF233at 237.742 kb on + strand, within GFF233at 237.742 kb on + strand, within GFF233at 237.765 kb on - strand, within GFF233at 237.770 kb on - strand, within GFF233at 237.789 kb on + strand, within GFF233at 237.789 kb on + strand, within GFF233at 237.789 kb on + strand, within GFF233at 237.789 kb on + strand, within GFF233at 237.789 kb on + strand, within GFF233at 237.789 kb on + strand, within GFF233at 237.789 kb on + strand, within GFF233at 237.789 kb on + strand, within GFF233at 237.797 kb on - strand, within GFF233at 237.797 kb on - strand, within GFF233at 237.797 kb on - strand, within GFF233at 237.797 kb on - strand, within GFF233at 237.797 kb on - strand, within GFF233at 237.807 kb on - strand, within GFF233at 237.807 kb on - strand, within GFF233at 237.817 kb on - strand, within GFF233at 237.817 kb on - strand, within GFF233at 237.870 kb on + strand, within GFF233at 237.870 kb on + strand, within GFF233at 237.870 kb on + strand, within GFF233at 237.870 kb on + strand, within GFF233at 237.870 kb on + strand, within GFF233at 237.873 kb on - strand, within GFF233at 237.878 kb on - strand, within GFF233at 237.878 kb on - strand, within GFF233at 237.878 kb on - strand, within GFF233at 237.878 kb on - strand, within GFF233at 237.881 kb on - strand, within GFF233at 237.886 kb on - strand, within GFF233at 237.886 kb on - strand, within GFF233at 237.889 kb on + strand, within GFF233at 237.953 kb on + strand, within GFF233at 237.953 kb on - strand, within GFF233at 237.971 kb on + strand, within GFF233at 237.982 kb on + strand, within GFF233at 237.982 kb on + strand, within GFF233

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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236,430 - +0.2
236,430 - -2.1
236,430 - -0.7
236,430 - -2.4
236,437 + +1.2
236,444 - +1.0
236,467 - -1.8
236,472 - -0.2
236,524 + +1.0
236,524 + -1.8
236,538 + +0.4
236,544 - -0.1
236,558 + GFF232 0.11 -1.1
236,558 + GFF232 0.11 +1.1
236,566 - GFF232 0.12 +0.8
236,566 - GFF232 0.12 +0.7
236,566 - GFF232 0.12 -0.2
236,577 + GFF232 0.15 -1.1
236,577 + GFF232 0.15 +1.2
236,577 + GFF232 0.15 +0.3
236,577 + GFF232 0.15 +0.6
236,585 - GFF232 0.16 -0.0
236,585 - GFF232 0.16 -0.8
236,590 + GFF232 0.17 +0.8
236,590 + GFF232 0.17 +0.2
236,590 + GFF232 0.17 -1.2
236,598 - GFF232 0.19 +1.4
236,620 + GFF232 0.24 -1.0
236,620 + GFF232 0.24 -0.7
236,628 - GFF232 0.25 -1.7
236,638 - GFF232 0.27 -0.8
236,652 + GFF232 0.30 -2.1
236,652 - GFF232 0.30 -0.1
236,654 + GFF232 0.31 -0.4
236,674 + GFF232 0.35 -1.3
236,716 + GFF232 0.43 -1.6
236,721 + GFF232 0.45 +1.2
236,753 + GFF232 0.51 +0.3
236,761 - GFF232 0.53 +0.2
236,785 - GFF232 0.58 -0.0
236,785 - GFF232 0.58 -0.0
236,785 - GFF232 0.58 -0.1
236,832 - GFF232 0.67 -0.8
236,863 - GFF232 0.74 +0.7
236,901 + GFF232 0.82 +0.0
236,902 + GFF232 0.82 -1.2
236,912 + GFF232 0.84 -1.8
236,915 - GFF232 0.85 -0.6
236,915 - GFF232 0.85 -0.1
236,920 - GFF232 0.86 -2.1
236,924 + GFF232 0.87 -0.8
236,925 - GFF232 0.87 -0.7
236,925 - GFF232 0.87 +0.2
236,925 - GFF232 0.87 +0.6
236,932 - GFF232 0.88 -0.3
236,932 - GFF232 0.88 -1.1
236,958 + -1.6
236,964 - -1.8
237,032 + -0.3
237,043 + +0.9
237,051 - -1.1
237,080 + +0.2
237,115 + +0.9
237,116 + -0.2
237,120 + -2.1
237,128 - -2.2
237,139 + -2.9
237,161 - -2.0
237,162 + -1.8
237,183 - -0.2
237,200 + -2.4
237,208 - -1.6
237,238 + -2.9
237,238 + -0.6
237,243 + -0.3
237,263 + -1.3
237,267 + -3.0
237,267 + -1.5
237,275 - -2.1
237,275 - -1.8
237,280 - -1.3
237,312 + -2.1
237,319 + -2.5
237,322 + GFF233 0.10 -2.9
237,346 + GFF233 0.11 -2.3
237,351 + GFF233 0.11 -0.4
237,351 + GFF233 0.11 +0.4
237,351 + GFF233 0.11 -0.8
237,351 + GFF233 0.11 -1.9
237,351 + GFF233 0.11 -0.7
237,359 - GFF233 0.12 -2.4
237,359 - GFF233 0.12 -1.4
237,359 - GFF233 0.12 -2.2
237,359 - GFF233 0.12 -2.0
237,359 - GFF233 0.12 -2.8
237,359 - GFF233 0.12 -2.2
237,359 - GFF233 0.12 -0.5
237,383 + GFF233 0.13 -2.1
237,418 + GFF233 0.15 -0.6
237,418 + GFF233 0.15 -1.0
237,418 + GFF233 0.15 -0.3
237,418 + GFF233 0.15 -1.8
237,418 + GFF233 0.15 -2.0
237,418 + GFF233 0.15 -1.3
237,418 + GFF233 0.15 -0.4
237,424 + GFF233 0.15 -1.6
237,424 - GFF233 0.15 -1.8
237,426 - GFF233 0.15 -2.3
237,426 - GFF233 0.15 -1.9
237,426 - GFF233 0.15 -1.5
237,432 - GFF233 0.15 -1.6
237,432 - GFF233 0.15 -1.3
237,432 - GFF233 0.15 -3.2
237,471 + GFF233 0.17 -0.2
237,472 + GFF233 0.17 -2.3
237,527 + GFF233 0.20 +0.4
237,546 + GFF233 0.21 -1.7
237,546 + GFF233 0.21 -1.7
237,556 - GFF233 0.21 -0.8
237,564 - GFF233 0.22 -2.3
237,566 + GFF233 0.22 -1.8
237,604 + GFF233 0.23 -1.6
237,604 + GFF233 0.23 -2.9
237,612 - GFF233 0.24 -3.2
237,612 - GFF233 0.24 -2.7
237,635 + GFF233 0.25 -1.0
237,637 + GFF233 0.25 -2.1
237,654 + GFF233 0.26 -3.2
237,673 - GFF233 0.27 -2.6
237,692 + GFF233 0.28 -3.4
237,692 + GFF233 0.28 -0.3
237,692 + GFF233 0.28 -1.7
237,692 + GFF233 0.28 -1.5
237,692 + GFF233 0.28 -1.7
237,692 + GFF233 0.28 -2.3
237,692 + GFF233 0.28 -2.3
237,692 + GFF233 0.28 -1.8
237,693 - GFF233 0.28 -2.0
237,700 + GFF233 0.28 -1.5
237,700 - GFF233 0.28 -3.3
237,700 - GFF233 0.28 -1.8
237,700 - GFF233 0.28 +0.9
237,700 - GFF233 0.28 -3.4
237,700 - GFF233 0.28 -1.6
237,700 - GFF233 0.28 -1.8
237,700 - GFF233 0.28 -2.3
237,700 - GFF233 0.28 -2.3
237,700 - GFF233 0.28 -1.8
237,710 - GFF233 0.28 -0.2
237,722 - GFF233 0.29 +0.2
237,724 + GFF233 0.29 -2.5
237,724 + GFF233 0.29 -2.6
237,735 - GFF233 0.30 -3.2
237,735 - GFF233 0.30 -1.7
237,742 + GFF233 0.30 -2.7
237,742 + GFF233 0.30 -3.0
237,765 - GFF233 0.31 -0.8
237,770 - GFF233 0.31 -1.5
237,789 + GFF233 0.32 -1.2
237,789 + GFF233 0.32 -1.7
237,789 + GFF233 0.32 -3.4
237,789 + GFF233 0.32 -1.9
237,789 + GFF233 0.32 -1.0
237,789 + GFF233 0.32 -2.7
237,789 + GFF233 0.32 -3.0
237,789 + GFF233 0.32 -1.9
237,797 - GFF233 0.33 -1.2
237,797 - GFF233 0.33 -0.5
237,797 - GFF233 0.33 -1.9
237,797 - GFF233 0.33 -1.8
237,797 - GFF233 0.33 -1.1
237,807 - GFF233 0.33 -2.4
237,807 - GFF233 0.33 -2.0
237,817 - GFF233 0.34 -1.6
237,817 - GFF233 0.34 -2.1
237,870 + GFF233 0.36 -1.6
237,870 + GFF233 0.36 -1.3
237,870 + GFF233 0.36 -1.0
237,870 + GFF233 0.36 -3.3
237,870 + GFF233 0.36 -2.6
237,873 - GFF233 0.36 -4.5
237,878 - GFF233 0.36 -0.3
237,878 - GFF233 0.36 -3.4
237,878 - GFF233 0.36 -1.6
237,878 - GFF233 0.36 -2.2
237,881 - GFF233 0.37 -1.3
237,886 - GFF233 0.37 -2.7
237,886 - GFF233 0.37 -1.6
237,889 + GFF233 0.37 +0.5
237,953 + GFF233 0.40 -2.1
237,953 - GFF233 0.40 -1.8
237,971 + GFF233 0.41 -0.5
237,982 + GFF233 0.41 -1.3
237,982 + GFF233 0.41 -2.6

Or see this region's nucleotide sequence