Strain Fitness in Sphingobium sp. HT1-2 around GFF2292

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,318,404	+		GFF2291	0.55	-0.6
2,318,411	-		GFF2291	0.56	+1.5
2,318,417	-		GFF2291	0.56	-1.6
2,318,422	+		GFF2291	0.56	+1.4
2,318,427	+		GFF2291	0.56	-0.1
2,318,435	-		GFF2291	0.57	+0.4
2,318,447	-		GFF2291	0.57	-1.2
2,318,485	-		GFF2291	0.59	-1.7
2,318,525	+		GFF2291	0.61	-1.2
2,318,525	+		GFF2291	0.61	+0.6
2,318,525	+		GFF2291	0.61	+0.3
2,318,525	+		GFF2291	0.61	-0.8
2,318,525	+		GFF2291	0.61	+0.2
2,318,525	+		GFF2291	0.61	-0.1
2,318,525	+		GFF2291	0.61	+0.4
2,318,525	+		GFF2291	0.61	-0.1
2,318,525	+		GFF2291	0.61	-0.1
2,318,525	+		GFF2291	0.61	+0.3
2,318,525	+		GFF2291	0.61	+0.6
2,318,533	-		GFF2291	0.62	-0.5
2,318,533	-		GFF2291	0.62	-1.8
2,318,533	-		GFF2291	0.62	-1.8
2,318,533	-		GFF2291	0.62	-0.2
2,318,533	-		GFF2291	0.62	-0.6
2,318,533	-		GFF2291	0.62	+0.1
2,318,550	-		GFF2291	0.62	+1.0
2,318,561	+		GFF2291	0.63	+0.3
2,318,561	+		GFF2291	0.63	+0.5
2,318,565	+		GFF2291	0.63	-0.7
2,318,565	+		GFF2291	0.63	-1.0
2,318,565	+		GFF2291	0.63	+0.2
2,318,569	-		GFF2291	0.63	-0.6
2,318,573	-		GFF2291	0.63	+0.5
2,318,573	-		GFF2291	0.63	-2.2
2,318,591	+		GFF2291	0.64	+1.2
2,318,605	+		GFF2291	0.65	-0.3
2,318,624	-		GFF2291	0.66	+0.8
2,318,711	+		GFF2291	0.70	-0.0
2,318,711	+		GFF2291	0.70	-1.2
2,318,711	+		GFF2291	0.70	+0.4
2,318,711	+		GFF2291	0.70	+0.9
2,318,711	+		GFF2291	0.70	-0.7
2,318,712	+		GFF2291	0.70	-0.2
2,318,714	-		GFF2291	0.70	-1.6
2,318,716	+		GFF2291	0.70	-0.3
2,318,716	+		GFF2291	0.70	-1.4
2,318,716	+		GFF2291	0.70	+0.0
2,318,716	+		GFF2291	0.70	-0.0
2,318,719	-		GFF2291	0.70	+1.0
2,318,719	-		GFF2291	0.70	-1.1
2,318,719	-		GFF2291	0.70	+0.8
2,318,719	-		GFF2291	0.70	-1.1
2,318,719	-		GFF2291	0.70	-1.7
2,318,724	-		GFF2291	0.71	-1.9
2,318,724	-		GFF2291	0.71	-0.2
2,318,731	+		GFF2291	0.71	-0.0
2,318,738	+		GFF2291	0.71	-0.0
2,318,738	+		GFF2291	0.71	+0.8
2,318,739	-		GFF2291	0.71	-1.1
2,318,753	-		GFF2291	0.72	-0.0
2,318,844	+		GFF2291	0.76	+0.0
2,318,886	+		GFF2291	0.78	+0.3
2,318,886	+		GFF2291	0.78	+1.4
2,318,921	+		GFF2291	0.80	+0.3
2,318,921	+		GFF2291	0.80	-1.9
2,318,921	+		GFF2291	0.80	-0.6
2,318,921	+		GFF2291	0.80	+1.3
2,318,921	+		GFF2291	0.80	+1.2
2,318,921	+		GFF2291	0.80	+1.3
2,318,921	+		GFF2291	0.80	-0.4
2,318,929	-		GFF2291	0.81	-0.7
2,318,929	-		GFF2291	0.81	-1.8
2,318,929	-		GFF2291	0.81	-1.0
2,318,929	-		GFF2291	0.81	-0.3
2,318,929	-		GFF2291	0.81	-0.9
2,318,929	-		GFF2291	0.81	-0.7
2,318,929	-		GFF2291	0.81	-0.0
2,318,929	-		GFF2291	0.81	+1.0
2,318,978	-		GFF2291	0.83	+0.4
2,319,011	+		GFF2291	0.85	-0.7
2,319,019	-		GFF2291	0.85	+0.2
2,319,023	+		GFF2291	0.85	+0.1
2,319,023	+		GFF2291	0.85	-2.1
2,319,023	+		GFF2291	0.85	-1.1
2,319,023	+		GFF2291	0.85	-0.2
2,319,024	-		GFF2291	0.85	-2.2
2,319,031	-		GFF2291	0.85	+0.6
2,319,031	-		GFF2291	0.85	+0.1
2,319,031	-		GFF2291	0.85	-2.6
2,319,031	-		GFF2291	0.85	+0.7
2,319,031	-		GFF2291	0.85	-1.2
2,319,031	-		GFF2291	0.85	-0.5
2,319,031	-		GFF2291	0.85	-0.4
2,319,041	-		GFF2291	0.86	-0.4
2,319,041	-		GFF2291	0.86	-1.6
2,319,049	-		GFF2291	0.86	+0.9
2,319,080	+		GFF2291	0.88	-1.5
2,319,088	+		GFF2291	0.88	-0.2
2,319,096	-		GFF2291	0.89	-1.8
2,319,102	+		GFF2291	0.89	+0.5
2,319,110	-		GFF2291	0.89	-1.2
2,319,124	-		GFF2291	0.90	+0.2
2,319,157	-				-0.5
2,319,167	+				+1.2
2,319,167	+				-1.1
2,319,167	+				-0.3
2,319,167	+				-1.4
2,319,175	-				-2.4
2,319,181	-				+0.8
2,319,191	+				+0.3
2,319,191	+				-0.4
2,319,191	+				+0.2
2,319,191	+				-1.6
2,319,191	+				+1.2
2,319,191	+				+0.3
2,319,197	+				+1.4
2,319,199	-				-0.1
2,319,199	-				+0.5
2,319,199	-				+1.8
2,319,218	-				-2.4
2,319,420	-				+1.2
2,319,420	-				+0.6
2,319,476	+		GFF2292	0.13	+0.6
2,319,485	+		GFF2292	0.15	-0.7
2,319,504	-		GFF2292	0.18	-0.6
2,319,509	+		GFF2292	0.18	-1.2
2,319,517	-		GFF2292	0.20	-0.7
2,319,519	+		GFF2292	0.20	-0.5
2,319,519	-		GFF2292	0.20	+1.0
2,319,527	-		GFF2292	0.21	-0.6
2,319,530	+		GFF2292	0.22	-0.8
2,319,576	+		GFF2292	0.29	+0.3
2,319,580	+		GFF2292	0.30	+1.2
2,319,580	+		GFF2292	0.30	-1.6
2,319,584	-		GFF2292	0.30	-0.7
2,319,596	+		GFF2292	0.32	-0.3
2,319,677	-		GFF2292	0.45	-0.1
2,319,685	+		GFF2292	0.46	-0.0
2,319,701	+		GFF2292	0.49	-0.2
2,319,711	-		GFF2292	0.50	-0.6
2,319,726	+		GFF2292	0.53	-1.8
2,319,728	+		GFF2292	0.53	+0.9
2,319,741	-		GFF2292	0.55	+0.6
2,319,743	-		GFF2292	0.55	+0.2
2,319,743	-		GFF2292	0.55	-2.2
2,319,765	+		GFF2292	0.59	+0.9
2,319,765	+		GFF2292	0.59	+0.8
2,319,770	+		GFF2292	0.60	-2.0
2,319,770	+		GFF2292	0.60	+0.7
2,319,770	+		GFF2292	0.60	-1.7
2,319,778	-		GFF2292	0.61	+0.9
2,319,793	+		GFF2292	0.63	-1.4
2,319,893	-		GFF2292	0.79	-1.0
2,319,916	-		GFF2292	0.83	+0.1
2,319,927	-		GFF2292	0.85	+0.8
2,319,949	+		GFF2292	0.88	+0.5
2,319,962	+				-1.0
2,319,966	+				+0.2
2,319,970	-				+0.5
2,319,970	-				-0.6
2,319,974	-				+0.8
2,319,976	+				-1.2
2,320,000	-				-0.8
2,320,018	+				+1.7
2,320,018	+				-0.6
2,320,026	-				+0.3
2,320,027	-				-0.5
2,320,029	+				-1.2
2,320,029	+				-1.1
2,320,032	-				+0.1
2,320,033	-				-1.7
2,320,039	-				+1.0
2,320,054	-				-1.4
2,320,079	+				+0.1
2,320,098	-				-1.5
2,320,174	-				-0.1
2,320,192	-		GFF2293	0.12	+0.2
2,320,231	+		GFF2293	0.17	-1.6
2,320,239	-		GFF2293	0.18	+0.8
2,320,265	-		GFF2293	0.22	-0.8
2,320,398	+		GFF2293	0.40	-2.6
2,320,429	-		GFF2293	0.44	-1.2
2,320,429	-		GFF2293	0.44	-0.0
2,320,429	-		GFF2293	0.44	-1.1
2,320,429	-		GFF2293	0.44	+0.0
2,320,458	+		GFF2293	0.48	-1.2
2,320,461	-		GFF2293	0.49	+0.2
2,320,488	-		GFF2293	0.52	+0.5
2,320,495	+		GFF2293	0.53	-1.7
2,320,503	-		GFF2293	0.54	-1.8
2,320,531	+		GFF2293	0.58	-1.6
2,320,531	+		GFF2293	0.58	-1.4
2,320,531	+		GFF2293	0.58	-1.2
2,320,539	-		GFF2293	0.59	-0.7
2,320,539	-		GFF2293	0.59	+0.4
2,320,539	-		GFF2293	0.59	-0.2
2,320,539	-		GFF2293	0.59	-0.2
2,320,539	-		GFF2293	0.59	-2.2
2,320,539	-		GFF2293	0.59	+0.3
2,320,539	-		GFF2293	0.59	+1.6
2,320,539	-		GFF2293	0.59	+0.3
2,320,539	-		GFF2293	0.59	+0.1
2,320,547	+		GFF2293	0.60	-1.2
2,320,566	-		GFF2293	0.63	-1.6
2,320,581	+		GFF2293	0.65	-1.2
2,320,581	+		GFF2293	0.65	-1.8
2,320,582	-		GFF2293	0.65	-1.2
2,320,589	-		GFF2293	0.66	+2.0
2,320,607	-		GFF2293	0.68	-1.2
2,320,653	-		GFF2293	0.75	-1.7
2,320,666	-		GFF2293	0.76	-0.2
2,320,754	+		GFF2293	0.88	-1.4
2,320,754	+		GFF2293	0.88	-0.4
2,320,762	-		GFF2293	0.90	-0.0
2,320,794	+				-2.3
2,320,802	-				-1.5
2,320,802	-				-0.4
2,320,802	-				+1.4
2,320,802	-				+0.4
2,320,817	-				-0.8
2,320,896	-				-0.1
2,320,912	-				+0.1
2,320,912	-				-0.8
2,320,977	-				-1.4
2,320,994	-				-1.9
2,321,006	-				+0.8