Strain Fitness in Sphingobium sp. HT1-2 around GFF2286

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,310,173	+		GFF2283	0.48	-0.4
2,310,178	+		GFF2283	0.48	-0.4
2,310,178	+		GFF2283	0.48	-0.2
2,310,218	-		GFF2283	0.52	-1.6
2,310,237	+		GFF2283	0.54	-0.1
2,310,245	-		GFF2283	0.55	-0.2
2,310,268	-		GFF2283	0.57	-2.8
2,310,270	-		GFF2283	0.57	-2.1
2,310,289	-		GFF2283	0.59	-2.2
2,310,289	-		GFF2283	0.59	+0.4
2,310,304	+		GFF2283	0.61	-0.9
2,310,304	+		GFF2283	0.61	-0.4
2,310,304	+		GFF2283	0.61	-0.9
2,310,304	+		GFF2283	0.61	-0.6
2,310,304	+		GFF2283	0.61	-0.8
2,310,310	-		GFF2283	0.61	+2.1
2,310,312	-		GFF2283	0.61	-0.8
2,310,312	-		GFF2283	0.61	+0.9
2,310,312	-		GFF2283	0.61	-0.0
2,310,312	-		GFF2283	0.61	+0.3
2,310,312	-		GFF2283	0.61	-0.0
2,310,317	-		GFF2283	0.62	-1.9
2,310,332	+		GFF2283	0.63	-0.4
2,310,332	+		GFF2283	0.63	+0.5
2,310,333	+		GFF2283	0.63	-0.9
2,310,340	-		GFF2283	0.64	-0.6
2,310,352	+		GFF2283	0.65	-0.0
2,310,360	-		GFF2283	0.66	-2.2
2,310,360	-		GFF2283	0.66	-0.8
2,310,365	-		GFF2283	0.67	-0.4
2,310,388	+		GFF2283	0.69	+1.2
2,310,388	+		GFF2283	0.69	-0.2
2,310,393	+		GFF2283	0.69	+0.8
2,310,393	+		GFF2283	0.69	-1.7
2,310,396	-		GFF2283	0.70	-0.4
2,310,400	+		GFF2283	0.70	-2.4
2,310,401	-		GFF2283	0.70	+1.2
2,310,401	-		GFF2283	0.70	-0.2
2,310,401	-		GFF2283	0.70	-2.0
2,310,408	-		GFF2283	0.71	-0.3
2,310,408	-		GFF2283	0.71	-0.2
2,310,415	+		GFF2283	0.72	-2.0
2,310,420	-		GFF2283	0.72	-1.2
2,310,423	-		GFF2283	0.72	+1.2
2,310,425	+		GFF2283	0.73	-1.3
2,310,431	+		GFF2283	0.73	-0.4
2,310,490	-		GFF2283	0.79	-1.6
2,310,517	+		GFF2283	0.82	+0.2
2,310,525	-		GFF2283	0.82	-0.5
2,310,539	+		GFF2283	0.84	-0.2
2,310,539	+		GFF2283	0.84	+1.3
2,310,547	-		GFF2283	0.85	-0.1
2,310,547	-		GFF2283	0.85	-1.5
2,310,547	-		GFF2283	0.85	+0.5
2,310,573	+		GFF2283	0.87	+0.9
2,310,573	+		GFF2283	0.87	+0.1
2,310,573	+		GFF2283	0.87	-1.6
2,310,573	+		GFF2283	0.87	+0.4
2,310,573	+		GFF2283	0.87	+0.6
2,310,573	+		GFF2283	0.87	+0.2
2,310,573	+		GFF2283	0.87	+1.8
2,310,579	+		GFF2283	0.88	-1.9
2,310,581	-		GFF2283	0.88	-0.3
2,310,581	-		GFF2283	0.88	+0.6
2,310,581	-		GFF2283	0.88	+0.1
2,310,581	-		GFF2283	0.88	-1.1
2,310,581	-		GFF2283	0.88	+0.6
2,310,605	-				-1.8
2,310,639	+				-2.4
2,310,696	+				+1.0
2,310,696	+				-0.6
2,310,696	+				-0.7
2,310,696	+				+0.6
2,310,704	+				-0.4
2,310,704	-				+0.2
2,310,755	+				-0.1
2,310,761	-				-2.0
2,310,776	+				-0.8
2,310,788	-				+1.1
2,310,788	-				+0.0
2,310,792	+				-2.7
2,310,792	+				-0.3
2,310,792	+				-0.4
2,310,792	+				+1.0
2,310,792	+				-1.6
2,310,792	+				+0.1
2,310,792	+				-2.3
2,310,792	+				-0.4
2,310,792	+				-0.3
2,310,800	-				-0.8
2,310,800	-				-1.6
2,310,800	-				-2.4
2,310,800	-				-1.5
2,310,800	-				-0.4
2,310,800	-				-1.6
2,310,800	-				-0.8
2,310,800	-				-1.5
2,310,807	-				-2.2
2,310,817	-				-0.2
2,310,856	-		GFF2284	0.26	-1.8
2,310,857	+		GFF2284	0.27	-0.3
2,310,865	-		GFF2284	0.31	-1.1
2,310,876	+		GFF2284	0.36	-0.7
2,310,876	+		GFF2284	0.36	+0.5
2,310,876	-		GFF2284	0.36	-0.4
2,310,884	-		GFF2284	0.40	-0.4
2,310,905	+		GFF2284	0.51	+0.7
2,310,913	-		GFF2284	0.55	+1.8
2,310,965	+		GFF2284	0.81	+0.8
2,310,973	-		GFF2284	0.85	-0.6
2,310,973	-		GFF2284	0.85	-0.7
2,310,988	+				-0.2
2,310,996	+				-0.9
2,311,022	+		GFF2285	0.16	+0.4
2,311,022	-		GFF2285	0.16	-1.9
2,311,041	-		GFF2285	0.28	+0.9
2,311,041	-		GFF2285	0.28	+0.4
2,311,044	+		GFF2285	0.30	+0.7
2,311,044	+		GFF2285	0.30	-0.1
2,311,044	+		GFF2285	0.30	-0.4
2,311,044	+		GFF2285	0.30	-1.2
2,311,044	+		GFF2285	0.30	+0.2
2,311,046	-		GFF2285	0.31	-0.2
2,311,052	-		GFF2285	0.35	+0.7
2,311,052	-		GFF2285	0.35	-2.2
2,311,052	-		GFF2285	0.35	+0.8
2,311,052	-		GFF2285	0.35	-0.7
2,311,052	-		GFF2285	0.35	-1.7
2,311,052	-		GFF2285	0.35	-0.8
2,311,083	+		GFF2285	0.56	+0.3
2,311,083	+		GFF2285	0.56	-0.8
2,311,083	+		GFF2285	0.56	+0.1
2,311,083	+		GFF2285	0.56	+0.4
2,311,083	+		GFF2285	0.56	-0.5
2,311,083	+		GFF2285	0.56	-0.7
2,311,083	+		GFF2285	0.56	+0.4
2,311,083	+		GFF2285	0.56	+0.6
2,311,083	+		GFF2285	0.56	+0.1
2,311,083	+		GFF2285	0.56	-0.2
2,311,091	-		GFF2285	0.61	-1.9
2,311,091	-		GFF2285	0.61	+0.5
2,311,091	-		GFF2285	0.61	-0.7
2,311,091	-		GFF2285	0.61	-1.9
2,311,091	-		GFF2285	0.61	-1.7
2,311,091	-		GFF2285	0.61	-1.3
2,311,091	-		GFF2285	0.61	-1.1
2,311,091	-		GFF2285	0.61	-0.9
2,311,091	-		GFF2285	0.61	+0.3
2,311,091	-		GFF2285	0.61	-0.3
2,311,093	-		GFF2285	0.62	-0.4
2,311,117	+		GFF2285	0.78	+0.1
2,311,117	+		GFF2285	0.78	+0.0
2,311,117	+		GFF2285	0.78	-2.2
2,311,117	+		GFF2285	0.78	-0.1
2,311,122	+		GFF2285	0.81	-0.5
2,311,125	-		GFF2285	0.83	-1.3
2,311,125	-		GFF2285	0.83	-0.2
2,311,127	+		GFF2285	0.84	-0.1
2,311,139	+				-1.5
2,311,155	-				-0.8
2,311,188	+				-1.2
2,311,188	+				-0.2
2,311,188	+				-0.6
2,311,188	+				+0.3
2,311,196	-				-2.0
2,311,200	+				-2.2
2,311,200	+				-1.8
2,311,298	+				-2.6
2,311,298	+				-1.4
2,311,306	+				+0.2
2,311,306	+				-0.9
2,311,306	+				-1.6
2,311,306	+				-1.9
2,311,314	-				-1.6
2,311,314	-				-2.4
2,311,319	-				-0.5
2,311,325	+				-1.5
2,311,346	-				-1.8
2,311,364	-				-2.0
2,311,373	+				-1.2
2,311,398	-		GFF2286	0.10	-2.9
2,311,449	-		GFF2286	0.13	-1.9
2,311,506	+		GFF2286	0.15	-1.9
2,311,560	-		GFF2286	0.17	-2.2
2,311,592	+		GFF2286	0.19	-0.8
2,311,600	-		GFF2286	0.19	-1.8
2,311,600	-		GFF2286	0.19	-1.1
2,311,600	-		GFF2286	0.19	-0.6
2,311,600	-		GFF2286	0.19	-1.2
2,311,600	-		GFF2286	0.19	-0.2
2,311,600	-		GFF2286	0.19	-1.6
2,311,600	-		GFF2286	0.19	-1.2
2,311,600	-		GFF2286	0.19	-1.4
2,311,611	-		GFF2286	0.20	-2.0
2,311,664	+		GFF2286	0.22	-0.9
2,311,673	+		GFF2286	0.22	-0.4
2,311,673	+		GFF2286	0.22	-2.5
2,311,678	+		GFF2286	0.22	-1.6
2,311,680	+		GFF2286	0.22	-2.6
2,311,680	+		GFF2286	0.22	+0.5
2,311,681	+		GFF2286	0.23	-2.5
2,311,681	-		GFF2286	0.23	-3.7
2,311,688	-		GFF2286	0.23	-2.8
2,311,689	-		GFF2286	0.23	-2.1
2,311,704	-		GFF2286	0.24	+0.3
2,311,758	+		GFF2286	0.26	-0.4
2,311,773	+		GFF2286	0.26	-1.0
2,311,773	+		GFF2286	0.26	-0.9
2,311,773	+		GFF2286	0.26	-2.2
2,311,774	+		GFF2286	0.27	-0.4
2,311,782	+		GFF2286	0.27	-2.4
2,311,807	-		GFF2286	0.28	+0.1
2,311,854	+		GFF2286	0.30	-0.7
2,311,879	-		GFF2286	0.31	-1.6
2,311,895	+		GFF2286	0.32	-2.8
2,311,930	-		GFF2286	0.33	-1.7
2,311,963	+		GFF2286	0.35	-2.7
2,311,986	+		GFF2286	0.36	-1.4
2,311,998	+		GFF2286	0.36	-2.1
2,312,000	+		GFF2286	0.36	-3.1
2,312,008	-		GFF2286	0.37	-1.1
2,312,022	+		GFF2286	0.37	-1.5
2,312,036	+		GFF2286	0.38	-1.1
2,312,044	-		GFF2286	0.38	-1.8
2,312,044	-		GFF2286	0.38	-0.8
2,312,044	-		GFF2286	0.38	-0.9
2,312,086	+		GFF2286	0.40	-1.2
2,312,094	-		GFF2286	0.40	-0.8
2,312,139	-		GFF2286	0.42	-1.1
2,312,229	+		GFF2286	0.46	-1.3
2,312,230	-		GFF2286	0.46	-1.2
2,312,350	+		GFF2286	0.51	-3.3
2,312,358	+		GFF2286	0.52	-1.6
2,312,358	+		GFF2286	0.52	+0.2
2,312,419	+		GFF2286	0.54	-1.4
2,312,423	-		GFF2286	0.54	-1.8
2,312,443	+		GFF2286	0.55	+0.4
2,312,443	+		GFF2286	0.55	-2.1
2,312,443	+		GFF2286	0.55	-1.6
2,312,443	+		GFF2286	0.55	-1.4
2,312,443	+		GFF2286	0.55	-1.5
2,312,443	+		GFF2286	0.55	-1.4
2,312,443	+		GFF2286	0.55	-0.4
2,312,451	-		GFF2286	0.56	-1.2
2,312,451	-		GFF2286	0.56	-0.2
2,312,451	-		GFF2286	0.56	-1.6
2,312,451	-		GFF2286	0.56	-1.6
2,312,451	-		GFF2286	0.56	+0.0
2,312,453	+		GFF2286	0.56	-0.3
2,312,453	+		GFF2286	0.56	-1.9
2,312,471	-		GFF2286	0.57	-1.8
2,312,489	+		GFF2286	0.57	+0.0
2,312,497	-		GFF2286	0.58	-0.9
2,312,497	-		GFF2286	0.58	-2.6
2,312,497	-		GFF2286	0.58	-2.5
2,312,536	+		GFF2286	0.59	-0.3
2,312,563	+		GFF2286	0.61	-0.3
2,312,583	+		GFF2286	0.61	-0.8
2,312,591	-		GFF2286	0.62	-1.5
2,312,709	+		GFF2286	0.67	-1.8
2,312,716	+		GFF2286	0.67	-1.2
2,312,717	-		GFF2286	0.67	-0.4
2,312,734	-		GFF2286	0.68	-1.3
2,312,759	+		GFF2286	0.69	-1.8
2,312,782	+		GFF2286	0.70	-2.4
2,312,787	+		GFF2286	0.70	-1.6
2,312,787	+		GFF2286	0.70	-1.0
2,312,787	+		GFF2286	0.70	-0.6
2,312,795	-		GFF2286	0.70	+1.2
2,312,811	-		GFF2286	0.71	-2.3
2,312,820	+		GFF2286	0.72	+0.4
2,312,886	+		GFF2286	0.74	+0.1
2,312,887	+		GFF2286	0.74	+0.0
2,312,897	+		GFF2286	0.75	-1.2
2,312,897	+		GFF2286	0.75	-2.1
2,312,897	+		GFF2286	0.75	-0.8
2,312,905	-		GFF2286	0.75	-0.1
2,312,937	+		GFF2286	0.77	-1.4
2,312,948	+		GFF2286	0.77	-2.3
2,312,971	+		GFF2286	0.78	-1.2
2,312,979	-		GFF2286	0.78	-2.1
2,312,989	-		GFF2286	0.79	-0.7
2,313,011	-		GFF2286	0.80	-3.0
2,313,046	+		GFF2286	0.81	-2.6
2,313,066	-		GFF2286	0.82	-1.5
2,313,088	-		GFF2286	0.83	-1.2
2,313,147	+		GFF2286	0.86	-1.6
2,313,210	+		GFF2286	0.88	-0.9
2,313,210	+		GFF2286	0.88	-1.6
2,313,210	+		GFF2286	0.88	-1.4
2,313,218	-		GFF2286	0.89	-1.8
2,313,218	-		GFF2286	0.89	-2.2
2,313,220	-		GFF2286	0.89	-0.2
2,313,239	+		GFF2286	0.90	-1.3
2,313,269	+				-1.4
2,313,269	+				-0.2
2,313,269	+				-1.2
2,313,277	-				-0.1
2,313,277	-				-1.7
2,313,280	-				-2.0
2,313,284	+				-1.5
2,313,313	-				-0.8
2,313,349	+				+0.5
2,313,369	+				-2.8
2,313,401	-				-0.2
2,313,408	-				-1.2
2,313,452	+				-2.4
2,313,452	+				-1.9
2,313,452	+				-1.1
2,313,452	+				+0.1
2,313,460	-				-0.8
2,313,483	+				-0.7
2,313,541	+				+0.9
2,313,549	-				+0.6
2,313,559	-				+1.4
2,313,561	+				+1.5
2,313,561	+				-0.8
2,313,563	+				+1.0
2,313,575	+				+0.4
2,313,575	+				-0.7
2,313,585	+				-0.7
2,313,585	+				+1.6
2,313,590	+				-0.4
2,313,590	+				-0.3
2,313,590	+				-0.0
2,313,593	-				+0.0
2,313,609	+				-0.9
2,313,654	+				-1.9
2,313,664	+				-0.9
2,313,697	+		GFF2287	0.11	+0.1
2,313,713	+		GFF2287	0.13	-1.1
2,313,720	+		GFF2287	0.14	-1.0
2,313,721	-		GFF2287	0.14	+0.5
2,313,721	-		GFF2287	0.14	-0.2
2,313,728	-		GFF2287	0.15	+0.1
2,313,730	+		GFF2287	0.16	-0.8
2,313,745	+		GFF2287	0.18	+0.7
2,313,753	-		GFF2287	0.19	-0.7
2,313,762	+		GFF2287	0.20	+0.4
2,313,762	+		GFF2287	0.20	+0.9
2,313,767	+		GFF2287	0.21	-1.8
2,313,770	-		GFF2287	0.21	+1.6
2,313,770	-		GFF2287	0.21	+0.9
2,313,772	+		GFF2287	0.22	-0.7
2,313,780	-		GFF2287	0.23	-0.5
2,313,780	-		GFF2287	0.23	-1.1
2,313,780	-		GFF2287	0.23	-0.5
2,313,780	-		GFF2287	0.23	-2.7
2,313,831	+		GFF2287	0.30	-0.3
2,313,846	+		GFF2287	0.32	+0.2
2,313,859	+		GFF2287	0.34	-1.1
2,313,885	-		GFF2287	0.38	+1.4
2,313,921	-		GFF2287	0.43	-0.0
2,313,937	-		GFF2287	0.46	+0.9
2,313,937	-		GFF2287	0.46	-0.8
2,313,944	-		GFF2287	0.47	+1.3
2,313,953	-		GFF2287	0.48	-0.5
2,313,964	-		GFF2287	0.49	-1.2
2,314,015	+		GFF2287	0.57	+0.2
2,314,020	-		GFF2287	0.58	-0.5
2,314,022	+		GFF2287	0.58	+1.1
2,314,022	+		GFF2287	0.58	-1.4
2,314,030	-		GFF2287	0.59	+0.6
2,314,057	-		GFF2287	0.63	-0.5
2,314,057	-		GFF2287	0.63	-0.7
2,314,068	+		GFF2287	0.64	+0.3
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2,314,086	-		GFF2287	0.67	-2.4
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2,314,111	+		GFF2287	0.71	-1.1
2,314,126	+		GFF2287	0.73	-2.6
2,314,134	-		GFF2287	0.74	-0.7
2,314,152	+		GFF2287	0.77	-0.2
2,314,162	+		GFF2287	0.78	-1.1
2,314,178	+		GFF2287	0.80	-1.4
2,314,210	-		GFF2287	0.85	-2.1
2,314,210	-		GFF2287	0.85	+2.5
2,314,214	+		GFF2287	0.86	+1.3
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2,314,214	+		GFF2287	0.86	+1.6
2,314,214	+		GFF2287	0.86	+0.4
2,314,216	+		GFF2287	0.86	+0.4
2,314,251	+				-0.5
2,314,254	-				+0.7
2,314,278	-				+2.0
2,314,283	+				-0.4
2,314,339	+				-0.1
2,314,342	+				+0.5
2,314,342	+				-1.5
2,314,349	+				-1.9
2,314,349	+				-0.1
2,314,349	+				-0.5
2,314,357	-				-2.5
2,314,357	-				-0.7
2,314,384	+		GFF2288	0.12	-0.8
2,314,392	-		GFF2288	0.13	-1.4
2,314,392	-		GFF2288	0.13	+0.8
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2,314,397	-		GFF2288	0.14	-2.3
2,314,418	-		GFF2288	0.17	-2.0
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2,314,436	+		GFF2288	0.20	-1.1
2,314,455	+		GFF2288	0.23	-2.0
2,314,479	-		GFF2288	0.27	-0.5