Strain Fitness in Sphingobium sp. HT1-2 around GFF2100

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,134,786	+				-0.9
2,134,786	+				+0.2
2,134,788	+				-0.4
2,134,794	-				+0.5
2,134,796	-				+1.1
2,134,839	-				+0.4
2,134,855	+				-0.7
2,134,883	-				-2.0
2,134,902	-				-1.8
2,134,938	+				+0.9
2,134,941	-				-0.4
2,134,995	-				-0.2
2,134,998	+				-0.4
2,135,009	+				+0.5
2,135,029	+		GFF2099	0.10	+0.9
2,135,035	-		GFF2099	0.11	-0.6
2,135,051	+		GFF2099	0.13	+1.5
2,135,051	+		GFF2099	0.13	+1.2
2,135,059	-		GFF2099	0.14	-1.9
2,135,061	+		GFF2099	0.14	-0.2
2,135,061	+		GFF2099	0.14	+0.9
2,135,061	+		GFF2099	0.14	-0.1
2,135,061	+		GFF2099	0.14	+0.5
2,135,061	+		GFF2099	0.14	-1.3
2,135,061	+		GFF2099	0.14	-0.1
2,135,061	+		GFF2099	0.14	-1.3
2,135,062	+		GFF2099	0.14	+1.6
2,135,069	-		GFF2099	0.15	-1.4
2,135,069	-		GFF2099	0.15	+1.3
2,135,069	-		GFF2099	0.15	-1.1
2,135,074	-		GFF2099	0.15	-0.6
2,135,084	-		GFF2099	0.17	-2.2
2,135,092	-		GFF2099	0.18	-0.3
2,135,092	-		GFF2099	0.18	-0.6
2,135,096	-		GFF2099	0.18	-0.5
2,135,103	+		GFF2099	0.19	-0.4
2,135,142	+		GFF2099	0.23	-0.9
2,135,248	-		GFF2099	0.36	-1.0
2,135,248	-		GFF2099	0.36	-1.5
2,135,250	+		GFF2099	0.36	-1.8
2,135,271	+		GFF2099	0.38	-1.6
2,135,271	+		GFF2099	0.38	-1.0
2,135,271	+		GFF2099	0.38	-0.5
2,135,279	-		GFF2099	0.39	-0.7
2,135,279	-		GFF2099	0.39	-0.1
2,135,302	+		GFF2099	0.42	-0.2
2,135,306	+		GFF2099	0.43	-0.4
2,135,311	+		GFF2099	0.43	+0.8
2,135,314	-		GFF2099	0.44	+0.8
2,135,314	-		GFF2099	0.44	+0.3
2,135,385	+		GFF2099	0.52	-2.3
2,135,385	+		GFF2099	0.52	+1.6
2,135,385	+		GFF2099	0.52	+1.7
2,135,385	+		GFF2099	0.52	-1.9
2,135,385	+		GFF2099	0.52	-0.7
2,135,385	+		GFF2099	0.52	-1.4
2,135,385	+		GFF2099	0.52	+0.7
2,135,385	+		GFF2099	0.52	+0.2
2,135,385	+		GFF2099	0.52	-0.2
2,135,385	+		GFF2099	0.52	-0.4
2,135,393	-		GFF2099	0.53	-1.4
2,135,393	-		GFF2099	0.53	-1.8
2,135,393	-		GFF2099	0.53	-0.5
2,135,393	-		GFF2099	0.53	-0.2
2,135,393	-		GFF2099	0.53	-0.1
2,135,404	-		GFF2099	0.54	+0.8
2,135,422	+		GFF2099	0.56	-1.0
2,135,432	+		GFF2099	0.57	+0.3
2,135,432	+		GFF2099	0.57	+0.3
2,135,432	+		GFF2099	0.57	-1.0
2,135,440	-		GFF2099	0.58	-0.5
2,135,440	-		GFF2099	0.58	-0.0
2,135,440	-		GFF2099	0.58	+0.9
2,135,440	-		GFF2099	0.58	-0.9
2,135,514	-		GFF2099	0.67	+0.9
2,135,552	+		GFF2099	0.71	+0.5
2,135,572	-		GFF2099	0.74	-0.7
2,135,572	-		GFF2099	0.74	-1.6
2,135,597	+		GFF2099	0.77	-1.3
2,135,597	+		GFF2099	0.77	-1.5
2,135,597	+		GFF2099	0.77	-0.0
2,135,605	-		GFF2099	0.78	+0.6
2,135,645	-		GFF2099	0.82	-0.6
2,135,656	+		GFF2099	0.84	+1.0
2,135,656	+		GFF2099	0.84	+0.4
2,135,656	+		GFF2099	0.84	-0.3
2,135,663	-		GFF2099	0.84	+0.8
2,135,663	-		GFF2099	0.84	-0.8
2,135,663	-		GFF2099	0.84	-0.8
2,135,664	-		GFF2099	0.84	+1.1
2,135,664	-		GFF2099	0.84	-1.7
2,135,664	-		GFF2099	0.84	-0.9
2,135,666	+		GFF2099	0.85	-0.1
2,135,666	+		GFF2099	0.85	-0.5
2,135,666	+		GFF2099	0.85	-1.3
2,135,666	+		GFF2099	0.85	+0.8
2,135,674	-		GFF2099	0.86	+0.6
2,135,674	-		GFF2099	0.86	-1.0
2,135,674	-		GFF2099	0.86	-0.1
2,135,674	-		GFF2099	0.86	-2.2
2,135,674	-		GFF2099	0.86	+0.2
2,135,674	-		GFF2099	0.86	-1.5
2,135,674	-		GFF2099	0.86	+0.1
2,135,683	+		GFF2099	0.87	+1.0
2,135,684	+		GFF2099	0.87	+0.8
2,135,684	+		GFF2099	0.87	-0.4
2,135,684	-		GFF2099	0.87	+0.5
2,135,691	-		GFF2099	0.88	-1.9
2,135,691	-		GFF2099	0.88	+0.8
2,135,710	-		GFF2099	0.90	+0.1
2,135,741	+				+0.3
2,135,741	+				+0.2
2,135,741	+				-1.8
2,135,746	+				-0.3
2,135,751	+				-1.3
2,135,751	+				+1.0
2,135,756	+				-2.0
2,135,768	-				+0.4
2,135,775	-				-3.0
2,135,782	+				+1.2
2,135,790	-				+0.8
2,135,795	-				+0.9
2,135,800	+				-1.1
2,135,808	-				+0.0
2,135,808	-				+0.9
2,135,809	-				-0.2
2,135,840	-				+1.5
2,135,866	-				+0.5
2,135,868	-				-1.9
2,135,884	-				-0.7
2,135,912	-				-0.9
2,135,936	+		GFF2100	0.11	-0.5
2,135,937	+		GFF2100	0.11	-0.6
2,135,940	-		GFF2100	0.11	+0.2
2,135,945	-		GFF2100	0.12	+1.0
2,135,982	-		GFF2100	0.15	-1.8
2,135,983	-		GFF2100	0.15	-0.9
2,136,006	-		GFF2100	0.16	-1.4
2,136,027	+		GFF2100	0.18	-1.3
2,136,027	+		GFF2100	0.18	-0.5
2,136,032	+		GFF2100	0.18	-2.2
2,136,033	+		GFF2100	0.18	-1.3
2,136,034	-		GFF2100	0.18	-0.3
2,136,034	-		GFF2100	0.18	+0.1
2,136,034	-		GFF2100	0.18	-0.0
2,136,034	-		GFF2100	0.18	+0.2
2,136,056	-		GFF2100	0.20	+0.9
2,136,069	+		GFF2100	0.21	-0.5
2,136,087	-		GFF2100	0.22	+0.9
2,136,102	+		GFF2100	0.23	+0.3
2,136,106	+		GFF2100	0.24	-0.7
2,136,146	-		GFF2100	0.27	-0.6
2,136,146	-		GFF2100	0.27	+0.7
2,136,163	+		GFF2100	0.28	-0.2
2,136,164	+		GFF2100	0.28	-2.2
2,136,164	+		GFF2100	0.28	-0.0
2,136,164	+		GFF2100	0.28	+0.1
2,136,167	-		GFF2100	0.28	-0.2
2,136,171	-		GFF2100	0.28	+1.7
2,136,171	-		GFF2100	0.28	-0.3
2,136,172	-		GFF2100	0.28	+0.6
2,136,172	-		GFF2100	0.28	-0.5
2,136,172	-		GFF2100	0.28	+0.1
2,136,182	+		GFF2100	0.29	-0.0
2,136,199	+		GFF2100	0.30	-1.3
2,136,206	-		GFF2100	0.31	-0.5
2,136,207	-		GFF2100	0.31	+0.5
2,136,207	-		GFF2100	0.31	+0.2
2,136,223	+		GFF2100	0.32	-0.0
2,136,228	+		GFF2100	0.33	-0.2
2,136,228	+		GFF2100	0.33	+0.3
2,136,236	-		GFF2100	0.33	+0.2
2,136,238	+		GFF2100	0.33	-0.6
2,136,246	-		GFF2100	0.34	+0.3
2,136,246	-		GFF2100	0.34	+1.8
2,136,246	-		GFF2100	0.34	+0.0
2,136,246	-		GFF2100	0.34	+0.7
2,136,279	-		GFF2100	0.36	-2.0
2,136,279	-		GFF2100	0.36	+0.2
2,136,315	+		GFF2100	0.39	-0.5
2,136,318	+		GFF2100	0.39	-1.2
2,136,320	+		GFF2100	0.39	-0.6
2,136,323	-		GFF2100	0.40	+0.0
2,136,328	+		GFF2100	0.40	-2.5
2,136,328	+		GFF2100	0.40	-1.8
2,136,328	-		GFF2100	0.40	-0.8
2,136,330	+		GFF2100	0.40	+0.5
2,136,330	+		GFF2100	0.40	-1.6
2,136,336	-		GFF2100	0.41	-1.1
2,136,336	-		GFF2100	0.41	-0.3
2,136,336	-		GFF2100	0.41	+0.5
2,136,338	-		GFF2100	0.41	-0.7
2,136,369	-		GFF2100	0.43	+0.6
2,136,392	+		GFF2100	0.45	-2.0
2,136,392	+		GFF2100	0.45	+0.3
2,136,394	-		GFF2100	0.45	-2.0
2,136,415	+		GFF2100	0.46	-1.3
2,136,425	+		GFF2100	0.47	+0.1
2,136,428	-		GFF2100	0.47	-0.2
2,136,433	+		GFF2100	0.48	-1.2
2,136,441	-		GFF2100	0.48	+0.2
2,136,500	-		GFF2100	0.53	-1.2
2,136,561	+		GFF2100	0.57	-1.3
2,136,562	-		GFF2100	0.57	-1.9
2,136,569	+		GFF2100	0.58	-0.4
2,136,586	+		GFF2100	0.59	-0.1
2,136,601	+		GFF2100	0.60	+1.6
2,136,607	+		GFF2100	0.60	+0.0
2,136,701	+		GFF2100	0.67	-0.3
2,136,710	+		GFF2100	0.68	-1.1
2,136,718	-		GFF2100	0.69	+0.3
2,136,793	+		GFF2100	0.74	-0.3
2,136,793	+		GFF2100	0.74	+0.7
2,136,793	+		GFF2100	0.74	+0.3
2,136,801	-		GFF2100	0.75	+0.1
2,136,801	-		GFF2100	0.75	-1.3
2,136,811	-		GFF2100	0.75	+0.3
2,136,823	+		GFF2100	0.76	+0.3
2,136,857	+		GFF2100	0.79	-1.1
2,136,865	-		GFF2100	0.79	-0.3
2,136,882	-		GFF2100	0.81	-0.3
2,136,900	-		GFF2100	0.82	+0.3
2,136,902	+		GFF2100	0.82	-1.4
2,136,909	+		GFF2100	0.83	-2.4
2,136,910	-		GFF2100	0.83	-0.1
2,136,917	-		GFF2100	0.83	+0.0
2,136,925	-		GFF2100	0.84	-0.0
2,136,925	-		GFF2100	0.84	+0.3
2,136,925	-		GFF2100	0.84	+0.4
2,136,980	+		GFF2100	0.88	+1.4
2,136,988	+		GFF2100	0.88	-2.0
2,136,992	+		GFF2100	0.89	-1.3
2,136,996	-		GFF2100	0.89	+0.9
2,137,000	-		GFF2100	0.89	+0.3
2,137,058	+				-0.7
2,137,058	+				+0.9
2,137,104	+				-1.4
2,137,204	-				-2.2
2,137,211	-				-1.3
2,137,285	-				-2.3
2,137,285	-				-1.4
2,137,293	+				-0.6
2,137,303	-				-1.1
2,137,344	+				+0.8
2,137,352	-				-0.7
2,137,371	-				-0.3
2,137,373	+				-0.8
2,137,373	+				+1.6
2,137,381	-				-0.1
2,137,381	-				-1.1
2,137,434	+		GFF2101	0.12	-0.8
2,137,437	+		GFF2101	0.12	+0.4
2,137,442	-		GFF2101	0.12	-0.8
2,137,451	+		GFF2101	0.13	-2.4
2,137,464	+		GFF2101	0.14	-1.1
2,137,469	+		GFF2101	0.15	-0.3
2,137,472	-		GFF2101	0.15	+1.0
2,137,479	+		GFF2101	0.16	-0.1
2,137,487	+		GFF2101	0.16	-1.6
2,137,487	+		GFF2101	0.16	-1.3
2,137,487	-		GFF2101	0.16	+1.6
2,137,487	-		GFF2101	0.16	-1.3
2,137,489	+		GFF2101	0.16	+0.1
2,137,489	+		GFF2101	0.16	-0.2
2,137,489	+		GFF2101	0.16	-1.7
2,137,489	+		GFF2101	0.16	-0.8
2,137,489	+		GFF2101	0.16	+1.2
2,137,489	+		GFF2101	0.16	-0.0
2,137,489	+		GFF2101	0.16	+0.3
2,137,494	-		GFF2101	0.17	-0.8
2,137,497	-		GFF2101	0.17	+1.7
2,137,497	-		GFF2101	0.17	-1.9
2,137,497	-		GFF2101	0.17	+0.2
2,137,497	-		GFF2101	0.17	-0.5
2,137,497	-		GFF2101	0.17	-1.7
2,137,510	+		GFF2101	0.18	-0.4
2,137,510	+		GFF2101	0.18	-0.7
2,137,510	+		GFF2101	0.18	+0.8
2,137,510	+		GFF2101	0.18	+0.6
2,137,513	-		GFF2101	0.19	-0.4
2,137,518	-		GFF2101	0.19	+0.2
2,137,518	-		GFF2101	0.19	-1.0
2,137,522	+		GFF2101	0.19	-0.7
2,137,522	+		GFF2101	0.19	+0.8
2,137,542	+		GFF2101	0.21	+0.3
2,137,572	+		GFF2101	0.24	-1.3
2,137,572	+		GFF2101	0.24	-1.0
2,137,572	+		GFF2101	0.24	-1.3
2,137,572	+		GFF2101	0.24	+0.0
2,137,572	+		GFF2101	0.24	+0.8
2,137,572	+		GFF2101	0.24	-0.5
2,137,572	+		GFF2101	0.24	-0.9
2,137,572	+		GFF2101	0.24	-1.0
2,137,575	-		GFF2101	0.24	-1.8
2,137,580	-		GFF2101	0.24	+0.0
2,137,580	-		GFF2101	0.24	-2.9
2,137,580	-		GFF2101	0.24	-0.3
2,137,582	-		GFF2101	0.24	-2.0
2,137,616	-		GFF2101	0.27	-1.0
2,137,629	+		GFF2101	0.28	-0.0
2,137,629	+		GFF2101	0.28	+0.1
2,137,637	-		GFF2101	0.29	+0.0
2,137,637	-		GFF2101	0.29	+0.6
2,137,669	+		GFF2101	0.32	+0.3
2,137,731	-		GFF2101	0.37	+0.5
2,137,752	+		GFF2101	0.39	-0.6
2,137,773	+		GFF2101	0.41	-0.2
2,137,813	-		GFF2101	0.44	-0.2
2,137,839	+		GFF2101	0.46	+1.4
2,137,840	+		GFF2101	0.46	-0.3
2,137,840	+		GFF2101	0.46	-0.7
2,137,845	+		GFF2101	0.47	-0.1
2,137,848	-		GFF2101	0.47	-0.0
2,137,850	+		GFF2101	0.47	-2.8
2,137,864	+		GFF2101	0.48	+0.1
2,137,896	+		GFF2101	0.51	-0.4
2,137,903	+		GFF2101	0.52	-1.1
2,137,923	+		GFF2101	0.53	+0.5
2,137,926	-		GFF2101	0.54	+0.1
2,137,931	+		GFF2101	0.54	-1.8
2,137,936	+		GFF2101	0.55	-0.7
2,137,944	-		GFF2101	0.55	+0.7
2,137,969	+		GFF2101	0.57	-1.6
2,137,977	-		GFF2101	0.58	-0.1
2,137,977	-		GFF2101	0.58	-0.4
2,137,985	+		GFF2101	0.59	-1.2
2,137,993	+		GFF2101	0.59	+0.1
2,137,993	+		GFF2101	0.59	-0.3
2,137,995	+		GFF2101	0.60	-0.3
2,137,995	+		GFF2101	0.60	-0.5
2,138,003	-		GFF2101	0.60	-1.3
2,138,005	+		GFF2101	0.60	-1.8
2,138,047	+		GFF2101	0.64	-0.3
2,138,050	-		GFF2101	0.64	+0.1
2,138,119	+		GFF2101	0.70	-1.2