Strain Fitness in Sphingobium sp. HT1-2 around GFF2041

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,073,846	-				+1.1
2,073,864	+				-0.6
2,073,872	-				-0.8
2,073,882	+				-0.8
2,073,895	+				-0.7
2,073,895	+				+0.6
2,073,903	-				-0.4
2,073,905	+				+0.8
2,073,905	+				-2.1
2,073,905	+				-1.7
2,073,906	+				-0.2
2,073,907	+				-1.4
2,073,907	+				-3.0
2,073,907	+				-1.1
2,073,913	-				-1.4
2,073,913	-				-1.9
2,073,913	-				-1.8
2,073,913	-				-1.0
2,073,913	-				-0.5
2,073,913	-				-0.6
2,073,915	-				-0.0
2,073,931	+				-1.6
2,073,944	-				-0.9
2,073,944	-				-0.5
2,073,946	-				-0.2
2,073,974	+				-0.1
2,073,990	-				-0.2
2,074,002	+				+0.2
2,074,006	+				+0.7
2,074,006	+				-0.6
2,074,010	-		GFF2040	0.10	-2.5
2,074,010	-		GFF2040	0.10	-2.1
2,074,025	+		GFF2040	0.12	+1.1
2,074,036	-		GFF2040	0.13	-0.0
2,074,046	-		GFF2040	0.14	-1.0
2,074,057	-		GFF2040	0.15	-1.5
2,074,059	+		GFF2040	0.15	+0.2
2,074,086	-		GFF2040	0.18	-0.3
2,074,145	-		GFF2040	0.25	-1.1
2,074,173	+		GFF2040	0.28	+0.1
2,074,175	+		GFF2040	0.28	+1.2
2,074,181	-		GFF2040	0.28	-1.0
2,074,181	-		GFF2040	0.28	+0.0
2,074,187	+		GFF2040	0.29	-2.6
2,074,191	+		GFF2040	0.30	-0.3
2,074,202	+		GFF2040	0.31	+0.7
2,074,210	-		GFF2040	0.32	-1.0
2,074,212	+		GFF2040	0.32	+0.7
2,074,230	-		GFF2040	0.34	-1.8
2,074,245	-		GFF2040	0.35	-0.3
2,074,263	+		GFF2040	0.37	-0.7
2,074,263	-		GFF2040	0.37	-1.4
2,074,268	-		GFF2040	0.38	-1.5
2,074,268	-		GFF2040	0.38	-0.7
2,074,274	+		GFF2040	0.38	+0.2
2,074,279	+		GFF2040	0.39	-0.8
2,074,284	+		GFF2040	0.40	-2.4
2,074,353	-		GFF2040	0.47	-0.6
2,074,355	+		GFF2040	0.47	+1.2
2,074,384	-		GFF2040	0.50	-0.4
2,074,396	+		GFF2040	0.52	+0.8
2,074,404	-		GFF2040	0.52	+0.9
2,074,432	+		GFF2040	0.55	-0.4
2,074,434	+		GFF2040	0.56	+0.7
2,074,440	-		GFF2040	0.56	-1.2
2,074,440	-		GFF2040	0.56	+0.6
2,074,440	-		GFF2040	0.56	-1.2
2,074,442	-		GFF2040	0.57	-0.1
2,074,444	+		GFF2040	0.57	-0.4
2,074,452	-		GFF2040	0.58	-1.7
2,074,484	-		GFF2040	0.61	-0.3
2,074,490	-		GFF2040	0.62	+0.3
2,074,490	-		GFF2040	0.62	-2.6
2,074,490	-		GFF2040	0.62	-0.2
2,074,490	-		GFF2040	0.62	-2.1
2,074,490	-		GFF2040	0.62	+0.1
2,074,497	-		GFF2040	0.62	-0.3
2,074,497	-		GFF2040	0.62	-1.0
2,074,497	-		GFF2040	0.62	+0.8
2,074,550	+		GFF2040	0.68	-0.2
2,074,550	+		GFF2040	0.68	+0.2
2,074,558	-		GFF2040	0.69	+0.5
2,074,563	-		GFF2040	0.70	-1.5
2,074,568	-		GFF2040	0.70	+0.6
2,074,575	+		GFF2040	0.71	-1.6
2,074,582	+		GFF2040	0.72	-1.2
2,074,608	+		GFF2040	0.74	+0.6
2,074,609	+		GFF2040	0.75	-0.2
2,074,620	-		GFF2040	0.76	+0.2
2,074,626	-		GFF2040	0.76	+0.8
2,074,626	-		GFF2040	0.76	-0.5
2,074,638	-		GFF2040	0.78	-0.2
2,074,667	+		GFF2040	0.81	-0.7
2,074,673	+		GFF2040	0.81	-1.0
2,074,679	-		GFF2040	0.82	-1.0
2,074,704	+		GFF2040	0.85	+1.5
2,074,736	+		GFF2040	0.88	+0.4
2,074,771	+				-0.1
2,074,771	+				+0.8
2,074,775	+				-1.0
2,074,780	+				-2.0
2,074,800	+				+1.6
2,074,800	+				+0.1
2,074,808	-				-0.6
2,074,810	-				+0.0
2,074,818	+				+0.5
2,074,821	+				-0.0
2,074,822	+				-0.5
2,074,826	+				-0.4
2,074,834	-				+0.9
2,074,839	+				-0.2
2,074,858	-				-0.4
2,074,858	-				-0.8
2,074,879	+				-1.3
2,074,925	-				-0.8
2,074,936	+				-0.1
2,074,940	-				-0.1
2,074,952	+				-0.0
2,074,986	+				-0.5
2,074,994	-				-0.2
2,074,994	-				+0.0
2,074,996	+				+0.3
2,075,035	+				+0.3
2,075,035	+				-0.5
2,075,035	+				-0.5
2,075,035	+				-1.1
2,075,039	-				-0.3
2,075,052	+				-2.0
2,075,079	+		GFF2041	0.10	-0.7
2,075,109	+		GFF2041	0.11	-1.2
2,075,109	-		GFF2041	0.11	-0.4
2,075,128	+		GFF2041	0.12	+1.1
2,075,134	-		GFF2041	0.12	-1.1
2,075,170	+		GFF2041	0.14	-0.2
2,075,170	+		GFF2041	0.14	-0.5
2,075,178	-		GFF2041	0.14	-0.4
2,075,222	+		GFF2041	0.16	-0.7
2,075,230	+		GFF2041	0.16	-0.5
2,075,230	-		GFF2041	0.16	+0.1
2,075,230	-		GFF2041	0.16	-0.7
2,075,230	-		GFF2041	0.16	-0.4
2,075,235	+		GFF2041	0.17	+0.2
2,075,235	+		GFF2041	0.17	+0.3
2,075,240	+		GFF2041	0.17	-0.3
2,075,240	+		GFF2041	0.17	+1.4
2,075,243	-		GFF2041	0.17	-0.7
2,075,248	-		GFF2041	0.17	-0.2
2,075,248	-		GFF2041	0.17	+0.1
2,075,248	-		GFF2041	0.17	-0.4
2,075,263	+		GFF2041	0.18	-0.4
2,075,263	+		GFF2041	0.18	-2.0
2,075,271	-		GFF2041	0.18	-1.0
2,075,285	+		GFF2041	0.19	+0.1
2,075,285	+		GFF2041	0.19	-0.5
2,075,287	+		GFF2041	0.19	-0.1
2,075,287	+		GFF2041	0.19	-0.5
2,075,287	+		GFF2041	0.19	+1.4
2,075,287	+		GFF2041	0.19	+0.1
2,075,287	+		GFF2041	0.19	-0.5
2,075,295	-		GFF2041	0.19	+0.3
2,075,295	-		GFF2041	0.19	+0.4
2,075,295	-		GFF2041	0.19	-1.4
2,075,296	+		GFF2041	0.19	-0.4
2,075,301	+		GFF2041	0.19	+0.0
2,075,301	+		GFF2041	0.19	+1.8
2,075,306	+		GFF2041	0.20	-0.6
2,075,311	+		GFF2041	0.20	+0.1
2,075,311	+		GFF2041	0.20	-1.4
2,075,311	+		GFF2041	0.20	-2.1
2,075,311	+		GFF2041	0.20	+0.5
2,075,311	+		GFF2041	0.20	-0.7
2,075,311	+		GFF2041	0.20	-0.5
2,075,314	-		GFF2041	0.20	-0.1
2,075,314	-		GFF2041	0.20	+0.5
2,075,314	-		GFF2041	0.20	+0.5
2,075,319	-		GFF2041	0.20	-1.9
2,075,319	-		GFF2041	0.20	+0.2
2,075,319	-		GFF2041	0.20	-2.5
2,075,319	-		GFF2041	0.20	-0.8
2,075,319	-		GFF2041	0.20	+1.0
2,075,319	-		GFF2041	0.20	-1.2
2,075,319	-		GFF2041	0.20	-1.8
2,075,319	-		GFF2041	0.20	+1.1
2,075,319	-		GFF2041	0.20	-0.6
2,075,319	-		GFF2041	0.20	-0.3
2,075,319	-		GFF2041	0.20	-1.2
2,075,319	-		GFF2041	0.20	-0.9
2,075,319	-		GFF2041	0.20	-1.4
2,075,319	-		GFF2041	0.20	-0.3
2,075,319	-		GFF2041	0.20	+0.4
2,075,321	+		GFF2041	0.20	+0.1
2,075,326	+		GFF2041	0.20	+0.5
2,075,326	+		GFF2041	0.20	+0.5
2,075,334	-		GFF2041	0.21	-0.1
2,075,334	-		GFF2041	0.21	-0.7
2,075,334	-		GFF2041	0.21	+0.3
2,075,334	-		GFF2041	0.21	-0.5
2,075,334	-		GFF2041	0.21	-1.1
2,075,352	-		GFF2041	0.21	-0.2
2,075,352	-		GFF2041	0.21	-1.9
2,075,357	-		GFF2041	0.22	-0.2
2,075,357	-		GFF2041	0.22	+1.5
2,075,357	-		GFF2041	0.22	+0.6
2,075,362	-		GFF2041	0.22	-2.2
2,075,389	-		GFF2041	0.23	-0.9
2,075,389	-		GFF2041	0.23	-2.4
2,075,412	+		GFF2041	0.24	+0.9
2,075,428	+		GFF2041	0.24	-0.5
2,075,428	+		GFF2041	0.24	+0.9
2,075,428	+		GFF2041	0.24	-0.0
2,075,439	+		GFF2041	0.25	-0.3
2,075,447	-		GFF2041	0.25	-0.2
2,075,447	-		GFF2041	0.25	-2.0
2,075,447	-		GFF2041	0.25	-0.2
2,075,467	-		GFF2041	0.26	-0.2
2,075,481	+		GFF2041	0.27	-0.2
2,075,481	+		GFF2041	0.27	+1.1
2,075,481	+		GFF2041	0.27	-1.2
2,075,481	+		GFF2041	0.27	+1.6
2,075,489	-		GFF2041	0.27	+0.6
2,075,489	-		GFF2041	0.27	+0.9
2,075,489	-		GFF2041	0.27	-0.1
2,075,504	-		GFF2041	0.28	+1.3
2,075,504	-		GFF2041	0.28	-0.3
2,075,504	-		GFF2041	0.28	-0.9
2,075,519	+		GFF2041	0.28	-0.7
2,075,519	+		GFF2041	0.28	-2.8
2,075,519	-		GFF2041	0.28	-0.2
2,075,527	-		GFF2041	0.29	-2.2
2,075,528	+		GFF2041	0.29	-1.7
2,075,528	+		GFF2041	0.29	+0.8
2,075,532	-		GFF2041	0.29	+1.2
2,075,545	-		GFF2041	0.29	+0.2
2,075,598	+		GFF2041	0.31	+0.6
2,075,598	+		GFF2041	0.31	-0.4
2,075,606	-		GFF2041	0.32	+1.8
2,075,608	+		GFF2041	0.32	-1.1
2,075,616	+		GFF2041	0.32	-0.8
2,075,620	+		GFF2041	0.32	+0.9
2,075,645	-		GFF2041	0.33	-0.8
2,075,668	+		GFF2041	0.34	+0.0
2,075,668	+		GFF2041	0.34	+0.3
2,075,668	+		GFF2041	0.34	-0.1
2,075,668	+		GFF2041	0.34	-0.2
2,075,668	+		GFF2041	0.34	-1.5
2,075,668	+		GFF2041	0.34	-2.7
2,075,676	-		GFF2041	0.35	-1.0
2,075,679	+		GFF2041	0.35	+0.5
2,075,679	+		GFF2041	0.35	+0.2
2,075,686	-		GFF2041	0.35	-0.0
2,075,687	-		GFF2041	0.35	-0.0
2,075,687	-		GFF2041	0.35	-1.2
2,075,687	-		GFF2041	0.35	-0.2
2,075,699	+		GFF2041	0.36	+0.4
2,075,706	+		GFF2041	0.36	-1.8
2,075,725	+		GFF2041	0.37	+0.4
2,075,735	-		GFF2041	0.37	-0.2
2,075,735	-		GFF2041	0.37	-0.4
2,075,738	-		GFF2041	0.37	-1.2
2,075,748	+		GFF2041	0.38	-1.0
2,075,757	+		GFF2041	0.38	-1.5
2,075,762	+		GFF2041	0.38	+0.1
2,075,762	+		GFF2041	0.38	+0.1
2,075,765	-		GFF2041	0.38	-0.9
2,075,770	-		GFF2041	0.38	+0.4
2,075,770	-		GFF2041	0.38	-1.1
2,075,797	+		GFF2041	0.40	-0.3
2,075,797	+		GFF2041	0.40	-0.7
2,075,823	+		GFF2041	0.41	-1.0
2,075,847	-		GFF2041	0.42	-1.6
2,075,865	-		GFF2041	0.42	+0.2
2,075,912	-		GFF2041	0.44	+0.2
2,075,920	+		GFF2041	0.45	+0.4
2,075,924	-		GFF2041	0.45	-0.8
2,075,931	+		GFF2041	0.45	+0.0
2,075,950	-		GFF2041	0.46	-0.0
2,075,955	-		GFF2041	0.46	-1.2
2,075,958	-		GFF2041	0.46	-0.5
2,075,969	-		GFF2041	0.47	+1.0
2,075,983	+		GFF2041	0.47	+0.4
2,075,991	-		GFF2041	0.48	-2.6
2,075,991	-		GFF2041	0.48	+0.1
2,075,995	-		GFF2041	0.48	+0.6
2,076,002	+		GFF2041	0.48	-0.3
2,076,010	-		GFF2041	0.48	-0.2
2,076,026	+		GFF2041	0.49	+0.4
2,076,040	-		GFF2041	0.50	+0.4
2,076,049	-		GFF2041	0.50	-0.8
2,076,054	+		GFF2041	0.50	+0.7
2,076,054	+		GFF2041	0.50	+0.1
2,076,055	-		GFF2041	0.50	+1.2
2,076,060	+		GFF2041	0.50	+0.3
2,076,062	-		GFF2041	0.50	+0.6
2,076,062	-		GFF2041	0.50	-1.4
2,076,062	-		GFF2041	0.50	-1.6
2,076,088	-		GFF2041	0.51	-0.4
2,076,094	-		GFF2041	0.52	-0.5
2,076,100	+		GFF2041	0.52	+0.0
2,076,108	-		GFF2041	0.52	-2.4
2,076,153	+		GFF2041	0.54	+0.9
2,076,153	+		GFF2041	0.54	+1.1
2,076,158	+		GFF2041	0.54	+0.4
2,076,158	+		GFF2041	0.54	+0.3
2,076,158	+		GFF2041	0.54	+0.1
2,076,158	+		GFF2041	0.54	-0.6
2,076,158	+		GFF2041	0.54	+0.9
2,076,158	+		GFF2041	0.54	+0.2
2,076,158	+		GFF2041	0.54	-1.1
2,076,158	+		GFF2041	0.54	+0.0
2,076,158	+		GFF2041	0.54	-0.6
2,076,166	-		GFF2041	0.55	-0.0
2,076,166	-		GFF2041	0.55	+0.2
2,076,166	-		GFF2041	0.55	-0.2
2,076,166	-		GFF2041	0.55	-1.8
2,076,166	-		GFF2041	0.55	-1.7
2,076,166	-		GFF2041	0.55	+1.0
2,076,177	-		GFF2041	0.55	-1.1
2,076,178	-		GFF2041	0.55	-0.4
2,076,190	+		GFF2041	0.56	-1.2
2,076,196	+		GFF2041	0.56	-0.2
2,076,201	+		GFF2041	0.56	+0.9
2,076,214	-		GFF2041	0.57	-0.6
2,076,218	+		GFF2041	0.57	+0.3
2,076,224	+		GFF2041	0.57	-0.6
2,076,288	+		GFF2041	0.60	-0.3
2,076,322	+		GFF2041	0.61	+2.0
2,076,340	+		GFF2041	0.62	+1.0
2,076,340	+		GFF2041	0.62	+1.1
2,076,348	-		GFF2041	0.62	+0.3
2,076,355	+		GFF2041	0.62	+1.0
2,076,365	+		GFF2041	0.63	+1.3
2,076,365	+		GFF2041	0.63	-1.6
2,076,365	+		GFF2041	0.63	-0.6
2,076,365	+		GFF2041	0.63	+0.4
2,076,365	+		GFF2041	0.63	+1.8
2,076,365	+		GFF2041	0.63	+0.9
2,076,365	+		GFF2041	0.63	-0.9
2,076,365	+		GFF2041	0.63	-1.2
2,076,367	-		GFF2041	0.63	-2.0
2,076,368	-		GFF2041	0.63	-0.2
2,076,373	-		GFF2041	0.63	+0.1
2,076,373	-		GFF2041	0.63	+1.4
2,076,373	-		GFF2041	0.63	+1.1
2,076,374	-		GFF2041	0.63	-0.9
2,076,384	-		GFF2041	0.64	-1.4
2,076,384	-		GFF2041	0.64	+0.1
2,076,417	+		GFF2041	0.65	+0.2
2,076,432	+		GFF2041	0.66	-1.5
2,076,445	+		GFF2041	0.66	-0.5
2,076,445	+		GFF2041	0.66	+0.5
2,076,445	+		GFF2041	0.66	-0.6
2,076,445	+		GFF2041	0.66	-1.4
2,076,445	+		GFF2041	0.66	+0.6
2,076,445	+		GFF2041	0.66	-0.1
2,076,453	-		GFF2041	0.66	-0.1
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2,077,049	-				-0.4
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2,077,224	-				+0.0
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2,077,242	-				-1.8
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