Strain Fitness in Sphingobium sp. HT1-2 around GFF2029

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,057,938	+		GFF2027	0.50	-2.0
2,057,939	+		GFF2027	0.50	-0.2
2,057,940	-		GFF2027	0.50	+0.2
2,057,947	-		GFF2027	0.51	+0.3
2,057,971	-		GFF2027	0.55	+0.2
2,058,002	-		GFF2027	0.59	+1.1
2,058,005	+		GFF2027	0.59	-0.8
2,058,013	-		GFF2027	0.60	+0.1
2,058,026	+		GFF2027	0.62	-2.8
2,058,037	-		GFF2027	0.63	-0.4
2,058,049	-		GFF2027	0.65	+0.4
2,058,049	-		GFF2027	0.65	+0.8
2,058,056	+		GFF2027	0.66	-1.4
2,058,056	+		GFF2027	0.66	-2.1
2,058,059	-		GFF2027	0.66	-0.5
2,058,064	-		GFF2027	0.67	-1.4
2,058,102	-		GFF2027	0.72	-0.4
2,058,123	-		GFF2027	0.74	+0.0
2,058,123	-		GFF2027	0.74	+0.8
2,058,123	-		GFF2027	0.74	+0.0
2,058,161	-		GFF2027	0.79	+0.7
2,058,168	-		GFF2027	0.80	-1.1
2,058,178	-		GFF2027	0.82	-1.5
2,058,199	-		GFF2027	0.84	-1.2
2,058,223	-		GFF2027	0.87	-1.0
2,058,248	-				-1.0
2,058,265	-				-0.6
2,058,283	-				-1.1
2,058,288	-				+1.6
2,058,312	-				-1.0
2,058,320	+				-0.7
2,058,327	-				-2.1
2,058,328	-				+0.8
2,058,328	-				-1.1
2,058,328	-				-0.7
2,058,337	+				-0.7
2,058,345	-				+0.0
2,058,372	+				+0.1
2,058,372	+				-0.3
2,058,376	-		GFF2028	0.10	-1.2
2,058,380	-		GFF2028	0.11	-1.4
2,058,422	-		GFF2028	0.19	-1.4
2,058,449	+		GFF2028	0.24	+0.8
2,058,476	+		GFF2028	0.30	-1.1
2,058,477	-		GFF2028	0.30	-0.8
2,058,477	-		GFF2028	0.30	-0.9
2,058,497	+		GFF2028	0.34	-1.0
2,058,499	+		GFF2028	0.34	-0.2
2,058,499	+		GFF2028	0.34	+0.1
2,058,505	-		GFF2028	0.35	-0.8
2,058,505	-		GFF2028	0.35	+0.5
2,058,507	+		GFF2028	0.35	+1.0
2,058,514	-		GFF2028	0.37	+0.2
2,058,514	-		GFF2028	0.37	+0.2
2,058,536	+		GFF2028	0.41	-0.9
2,058,538	-		GFF2028	0.41	-2.3
2,058,554	+		GFF2028	0.44	-1.7
2,058,589	-		GFF2028	0.51	+0.9
2,058,591	+		GFF2028	0.52	-0.5
2,058,605	+		GFF2028	0.54	-1.0
2,058,613	-		GFF2028	0.56	-0.0
2,058,646	+		GFF2028	0.62	+1.7
2,058,650	+		GFF2028	0.63	-0.6
2,058,654	-		GFF2028	0.64	-0.4
2,058,687	+		GFF2028	0.70	-0.5
2,058,719	+		GFF2028	0.76	-0.7
2,058,725	+		GFF2028	0.77	-0.2
2,058,730	+		GFF2028	0.78	+0.5
2,058,740	+		GFF2028	0.80	+0.1
2,058,740	+		GFF2028	0.80	-1.9
2,058,751	+		GFF2028	0.82	-2.4
2,058,788	-		GFF2028	0.89	+1.1
2,058,788	-		GFF2028	0.89	+0.4
2,058,821	+				+0.2
2,058,821	+				-0.4
2,058,821	+				+0.0
2,058,867	+				+0.5
2,058,867	+				+0.3
2,058,867	+				-0.1
2,058,914	-				+0.2
2,058,930	+				-0.6
2,058,933	-				-1.4
2,058,943	-				+0.6
2,058,960	+				+1.1
2,058,965	+				-0.2
2,058,965	+				-1.5
2,058,968	-				+2.0
2,058,968	-				-0.0
2,058,968	-				-1.9
2,058,968	-				-1.7
2,058,970	+				-1.2
2,058,970	+				+0.1
2,058,973	-				-0.5
2,058,973	-				-0.3
2,058,992	-				+0.8
2,059,049	+		GFF2029	0.11	+0.1
2,059,049	+		GFF2029	0.11	-0.3
2,059,059	+		GFF2029	0.12	-0.3
2,059,067	-		GFF2029	0.13	-0.8
2,059,067	-		GFF2029	0.13	+0.5
2,059,096	+		GFF2029	0.16	-1.1
2,059,096	+		GFF2029	0.16	-0.1
2,059,096	+		GFF2029	0.16	+1.1
2,059,121	+		GFF2029	0.18	-1.4
2,059,156	-		GFF2029	0.22	-1.2
2,059,161	+		GFF2029	0.22	+1.0
2,059,163	+		GFF2029	0.23	+0.0
2,059,169	+		GFF2029	0.23	-0.3
2,059,169	-		GFF2029	0.23	+1.3
2,059,177	-		GFF2029	0.24	+0.8
2,059,188	+		GFF2029	0.25	-1.0
2,059,200	-		GFF2029	0.26	-0.5
2,059,214	-		GFF2029	0.28	+0.6
2,059,214	-		GFF2029	0.28	+0.7
2,059,245	+		GFF2029	0.31	-0.3
2,059,250	+		GFF2029	0.31	+1.0
2,059,258	-		GFF2029	0.32	+1.2
2,059,258	-		GFF2029	0.32	-0.7
2,059,281	+		GFF2029	0.34	+0.1
2,059,286	-		GFF2029	0.35	+0.6
2,059,299	-		GFF2029	0.36	+1.1
2,059,300	+		GFF2029	0.36	-1.5
2,059,300	+		GFF2029	0.36	-0.6
2,059,300	+		GFF2029	0.36	-1.8
2,059,305	+		GFF2029	0.36	+0.3
2,059,308	-		GFF2029	0.37	-1.6
2,059,313	-		GFF2029	0.37	+0.7
2,059,324	+		GFF2029	0.38	+0.4
2,059,334	+		GFF2029	0.39	+0.2
2,059,345	+		GFF2029	0.40	-0.2
2,059,347	+		GFF2029	0.41	-0.6
2,059,347	+		GFF2029	0.41	+0.3
2,059,347	-		GFF2029	0.41	+0.1
2,059,348	-		GFF2029	0.41	+0.8
2,059,355	-		GFF2029	0.41	-2.3
2,059,355	-		GFF2029	0.41	-1.9
2,059,367	-		GFF2029	0.43	-0.8
2,059,380	+		GFF2029	0.44	+0.4
2,059,380	+		GFF2029	0.44	+0.2
2,059,380	+		GFF2029	0.44	-0.5
2,059,388	-		GFF2029	0.45	-1.6
2,059,394	-		GFF2029	0.45	-1.4
2,059,405	+		GFF2029	0.46	+1.4
2,059,405	+		GFF2029	0.46	+0.2
2,059,407	-		GFF2029	0.46	+0.3
2,059,413	-		GFF2029	0.47	-0.2
2,059,423	-		GFF2029	0.48	-0.8
2,059,426	+		GFF2029	0.48	-0.1
2,059,426	+		GFF2029	0.48	-0.2
2,059,434	-		GFF2029	0.49	+0.7
2,059,436	-		GFF2029	0.49	-0.5
2,059,450	-		GFF2029	0.51	+1.1
2,059,462	+		GFF2029	0.52	+0.1
2,059,463	+		GFF2029	0.52	-1.1
2,059,470	-		GFF2029	0.53	-0.3
2,059,486	+		GFF2029	0.54	+0.3
2,059,489	-		GFF2029	0.54	+0.0
2,059,494	-		GFF2029	0.55	+0.1
2,059,560	+		GFF2029	0.61	+0.8
2,059,568	-		GFF2029	0.62	-0.6
2,059,644	+		GFF2029	0.70	-0.4
2,059,654	+		GFF2029	0.71	+1.1
2,059,654	+		GFF2029	0.71	+0.5
2,059,654	+		GFF2029	0.71	+1.2
2,059,655	+		GFF2029	0.71	+1.3
2,059,662	-		GFF2029	0.71	-2.2
2,059,662	-		GFF2029	0.71	-0.2
2,059,681	+		GFF2029	0.73	+1.0
2,059,681	+		GFF2029	0.73	-0.9
2,059,681	+		GFF2029	0.73	-0.4
2,059,689	-		GFF2029	0.74	+0.0
2,059,689	-		GFF2029	0.74	-1.2
2,059,717	+		GFF2029	0.77	+0.2
2,059,732	+		GFF2029	0.78	-1.7
2,059,794	+		GFF2029	0.84	+1.3
2,059,802	+		GFF2029	0.85	+0.1
2,059,820	+		GFF2029	0.87	-0.3
2,059,820	+		GFF2029	0.87	+0.2
2,059,829	-		GFF2029	0.88	+0.5
2,059,829	-		GFF2029	0.88	-0.3
2,059,846	+		GFF2029	0.89	-1.3
2,059,846	+		GFF2029	0.89	+0.3
2,059,846	+		GFF2029	0.89	-0.9
2,059,846	+		GFF2029	0.89	+2.2
2,059,846	+		GFF2029	0.89	+1.1
2,059,846	+		GFF2029	0.89	-0.9
2,059,846	+		GFF2029	0.89	-0.9
2,059,854	-				-2.0
2,059,854	-				-1.0
2,059,863	+				-1.6
2,059,871	-				-1.0
2,059,872	+				-0.0
2,059,883	+				+0.2
2,059,885	-				-1.3
2,059,891	-				-0.5
2,059,891	-				-0.2
2,059,915	+				+1.1
2,059,915	+				+0.3
2,059,915	+				-1.4
2,059,920	+				+1.3
2,059,923	-				-0.3
2,059,923	-				-1.2
2,059,923	-				+0.6
2,059,923	-				+0.9
2,059,923	-				-0.5
2,059,923	-				-1.5
2,059,923	-				+0.0
2,059,923	-				-0.1
2,059,923	-				-0.1
2,059,923	-				-1.4
2,059,925	+				-0.0
2,059,933	-				-0.3
2,059,940	+				-2.0
2,059,959	+				-0.1
2,059,973	+				+0.2
2,059,978	+				+0.2
2,059,978	+				-0.1
2,060,024	-				+1.8
2,060,042	+				-0.9
2,060,046	+				+0.1
2,060,054	-				+0.1
2,060,060	+				+0.3
2,060,060	+				-1.2
2,060,061	+				-1.9
2,060,061	-				+0.1
2,060,065	+				+0.9
2,060,068	-				-1.2
2,060,073	-				-0.2
2,060,079	+				+0.8
2,060,079	-				+1.0
2,060,094	-				-0.6
2,060,199	+		GFF2030	0.25	-0.8
2,060,225	-		GFF2030	0.30	-1.3
2,060,250	-		GFF2030	0.35	+0.7
2,060,250	-		GFF2030	0.35	-0.4
2,060,250	-		GFF2030	0.35	-1.7
2,060,252	+		GFF2030	0.35	+0.1
2,060,260	-		GFF2030	0.37	-2.5
2,060,262	+		GFF2030	0.37	-0.5
2,060,262	+		GFF2030	0.37	+1.5
2,060,262	+		GFF2030	0.37	+0.7
2,060,262	+		GFF2030	0.37	+0.6
2,060,262	+		GFF2030	0.37	-0.8
2,060,262	+		GFF2030	0.37	-1.6
2,060,262	+		GFF2030	0.37	-0.8
2,060,262	+		GFF2030	0.37	-1.4
2,060,262	+		GFF2030	0.37	+0.2
2,060,262	+		GFF2030	0.37	-0.3
2,060,262	+		GFF2030	0.37	+0.6
2,060,262	+		GFF2030	0.37	-2.6
2,060,262	+		GFF2030	0.37	-1.2
2,060,262	+		GFF2030	0.37	+1.7
2,060,262	+		GFF2030	0.37	+0.7
2,060,262	+		GFF2030	0.37	-1.2
2,060,262	+		GFF2030	0.37	+0.9
2,060,262	+		GFF2030	0.37	+1.0
2,060,262	+		GFF2030	0.37	-0.3
2,060,262	+		GFF2030	0.37	+0.6
2,060,262	+		GFF2030	0.37	+0.1
2,060,265	-		GFF2030	0.38	-0.0
2,060,267	+		GFF2030	0.38	-0.8
2,060,267	+		GFF2030	0.38	-2.4
2,060,270	-		GFF2030	0.39	-0.6
2,060,270	-		GFF2030	0.39	+0.8
2,060,270	-		GFF2030	0.39	+0.4
2,060,270	-		GFF2030	0.39	-0.3
2,060,270	-		GFF2030	0.39	+0.3
2,060,270	-		GFF2030	0.39	-1.3
2,060,270	-		GFF2030	0.39	+0.4
2,060,270	-		GFF2030	0.39	-0.6
2,060,270	-		GFF2030	0.39	-1.4
2,060,270	-		GFF2030	0.39	+1.2
2,060,275	-		GFF2030	0.40	-0.6
2,060,275	-		GFF2030	0.40	-1.1
2,060,300	+		GFF2030	0.45	+0.2
2,060,308	-		GFF2030	0.46	-0.6
2,060,308	-		GFF2030	0.46	-1.9
2,060,317	+		GFF2030	0.48	-1.4
2,060,371	+		GFF2030	0.59	-1.0
2,060,371	+		GFF2030	0.59	-2.0
2,060,376	+		GFF2030	0.60	-0.2
2,060,379	-		GFF2030	0.60	+0.2
2,060,381	+		GFF2030	0.61	+0.6
2,060,389	-		GFF2030	0.62	+0.7
2,060,401	-		GFF2030	0.65	+0.0
2,060,405	+		GFF2030	0.65	-0.2
2,060,411	-		GFF2030	0.67	-1.5
2,060,413	+		GFF2030	0.67	-1.1
2,060,417	-		GFF2030	0.68	-1.7
2,060,421	-		GFF2030	0.69	-0.4
2,060,455	-		GFF2030	0.75	+0.4
2,060,467	-		GFF2030	0.78	+0.4
2,060,472	-		GFF2030	0.79	-2.0
2,060,472	-		GFF2030	0.79	+0.2
2,060,483	+		GFF2030	0.81	+0.0
2,060,498	+		GFF2030	0.84	+1.3
2,060,550	-				-0.1
2,060,561	+				-0.1
2,060,577	-				+0.5
2,060,590	-				+0.3
2,060,596	+				-2.7
2,060,598	+				-0.0
2,060,601	-				-0.5
2,060,604	+				-0.4
2,060,605	+				-0.1
2,060,605	+				-1.8
2,060,613	-				+0.4
2,060,613	-				+0.9
2,060,613	-				-0.7
2,060,613	-				-0.3
2,060,637	+				-0.1
2,060,637	+				-0.5
2,060,667	-				-0.0
2,060,667	-				+0.6
2,060,681	+				+0.5
2,060,681	+				-2.8
2,060,689	-				-0.3
2,060,689	-				-1.5
2,060,689	-				-0.0
2,060,689	-				-3.0
2,060,696	-				+0.6
2,060,699	+				+0.8
2,060,699	+				+0.4
2,060,699	+				-1.5
2,060,702	-				-0.2
2,060,707	-				-1.7
2,060,709	+		GFF2031	0.10	-0.3
2,060,709	+		GFF2031	0.10	-1.2
2,060,712	-		GFF2031	0.10	+1.6
2,060,715	+		GFF2031	0.11	-0.2
2,060,718	-		GFF2031	0.11	-0.7
2,060,747	-		GFF2031	0.14	+0.5
2,060,751	+		GFF2031	0.14	+0.9
2,060,764	-		GFF2031	0.15	+0.3
2,060,766	+		GFF2031	0.15	+0.2
2,060,766	+		GFF2031	0.15	+0.5
2,060,766	+		GFF2031	0.15	+0.5
2,060,766	+		GFF2031	0.15	-0.0
2,060,774	-		GFF2031	0.16	-0.2
2,060,774	-		GFF2031	0.16	-0.7
2,060,774	-		GFF2031	0.16	+0.4
2,060,774	-		GFF2031	0.16	-0.3
2,060,805	-		GFF2031	0.19	-1.8
2,060,838	-		GFF2031	0.22	-0.1
2,060,839	+		GFF2031	0.22	+0.4
2,060,839	+		GFF2031	0.22	-1.1
2,060,843	+		GFF2031	0.23	+0.1
2,060,869	+		GFF2031	0.25	-0.7
2,060,869	+		GFF2031	0.25	-2.2
2,060,869	+		GFF2031	0.25	-1.4
2,060,869	+		GFF2031	0.25	-0.1
2,060,869	+		GFF2031	0.25	+0.3
2,060,869	+		GFF2031	0.25	-1.0
2,060,869	+		GFF2031	0.25	+0.8
2,060,869	+		GFF2031	0.25	+0.3
2,060,869	+		GFF2031	0.25	+0.6
2,060,869	+		GFF2031	0.25	-1.2
2,060,869	+		GFF2031	0.25	+0.2
2,060,869	+		GFF2031	0.25	+0.9
2,060,869	+		GFF2031	0.25	+1.4
2,060,869	+		GFF2031	0.25	+0.6
2,060,869	+		GFF2031	0.25	+0.1
2,060,869	+		GFF2031	0.25	-0.2
2,060,869	+		GFF2031	0.25	-0.4
2,060,869	+		GFF2031	0.25	-1.6
2,060,869	+		GFF2031	0.25	-0.5
2,060,877	-		GFF2031	0.26	+0.5
2,060,877	-		GFF2031	0.26	-1.2
2,060,877	-		GFF2031	0.26	-0.3
2,060,877	-		GFF2031	0.26	+0.0
2,060,877	-		GFF2031	0.26	-0.8
2,060,877	-		GFF2031	0.26	-0.5
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