Strain Fitness in Sphingobium sp. HT1-2 around GFF2021

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,044,399	+		GFF2019	0.66	-0.3
2,044,409	-		GFF2019	0.67	+0.0
2,044,445	-		GFF2019	0.72	-0.2
2,044,455	-		GFF2019	0.73	-1.2
2,044,466	-		GFF2019	0.74	-2.4
2,044,476	-		GFF2019	0.76	-0.8
2,044,476	-		GFF2019	0.76	+0.2
2,044,476	-		GFF2019	0.76	+0.4
2,044,478	-		GFF2019	0.76	+1.5
2,044,481	-		GFF2019	0.76	-0.7
2,044,481	-		GFF2019	0.76	-0.2
2,044,481	-		GFF2019	0.76	-0.9
2,044,481	-		GFF2019	0.76	-0.2
2,044,481	-		GFF2019	0.76	+0.3
2,044,486	-		GFF2019	0.77	+0.7
2,044,533	+		GFF2019	0.83	-2.6
2,044,533	+		GFF2019	0.83	+0.5
2,044,533	+		GFF2019	0.83	-1.7
2,044,617	+				+0.5
2,044,627	+				-0.1
2,044,677	+				+0.3
2,044,696	-				+0.0
2,044,714	+				-1.7
2,044,714	+				-1.2
2,044,714	+				-0.1
2,044,722	-				-0.4
2,044,722	-				-0.1
2,044,722	-				+0.7
2,044,723	-				+1.4
2,044,726	+				+0.3
2,044,734	-		GFF2020	0.11	-0.4
2,044,760	+		GFF2020	0.14	+0.5
2,044,765	+		GFF2020	0.15	+1.6
2,044,765	+		GFF2020	0.15	+0.4
2,044,766	+		GFF2020	0.15	-1.4
2,044,774	-		GFF2020	0.16	-0.6
2,044,774	-		GFF2020	0.16	-0.5
2,044,774	-		GFF2020	0.16	-1.4
2,044,774	-		GFF2020	0.16	-0.7
2,044,774	-		GFF2020	0.16	-0.1
2,044,781	+		GFF2020	0.17	-1.2
2,044,789	-		GFF2020	0.18	+0.9
2,044,791	+		GFF2020	0.19	+1.1
2,044,816	+		GFF2020	0.22	+0.7
2,044,816	+		GFF2020	0.22	+0.1
2,044,816	+		GFF2020	0.22	-0.5
2,044,816	+		GFF2020	0.22	+0.6
2,044,819	-		GFF2020	0.22	+0.9
2,044,842	+		GFF2020	0.26	-1.3
2,044,842	+		GFF2020	0.26	+0.2
2,044,845	-		GFF2020	0.26	+0.6
2,044,847	+		GFF2020	0.26	+0.3
2,044,847	-		GFF2020	0.26	+1.5
2,044,847	-		GFF2020	0.26	-0.6
2,044,850	-		GFF2020	0.27	-0.1
2,044,850	-		GFF2020	0.27	-1.0
2,044,854	+		GFF2020	0.27	+0.9
2,044,854	+		GFF2020	0.27	+0.2
2,044,854	+		GFF2020	0.27	-1.5
2,044,854	+		GFF2020	0.27	+0.6
2,044,859	+		GFF2020	0.28	-0.4
2,044,862	-		GFF2020	0.28	+0.2
2,044,862	-		GFF2020	0.28	-2.0
2,044,869	+		GFF2020	0.29	+0.4
2,044,877	-		GFF2020	0.30	+0.2
2,044,885	+		GFF2020	0.32	-1.2
2,044,885	+		GFF2020	0.32	+0.6
2,044,895	+		GFF2020	0.33	-0.1
2,044,895	+		GFF2020	0.33	-1.8
2,044,895	+		GFF2020	0.33	+0.6
2,044,902	-		GFF2020	0.34	+1.1
2,044,909	-		GFF2020	0.35	+0.5
2,044,943	+		GFF2020	0.40	-1.5
2,044,970	+		GFF2020	0.43	-2.0
2,044,978	-		GFF2020	0.44	-1.9
2,044,983	+		GFF2020	0.45	-0.3
2,044,999	+		GFF2020	0.47	-0.8
2,045,000	-		GFF2020	0.47	-1.9
2,045,001	+		GFF2020	0.48	-0.8
2,045,004	-		GFF2020	0.48	+0.1
2,045,009	+		GFF2020	0.49	-1.8
2,045,009	-		GFF2020	0.49	+0.3
2,045,012	+		GFF2020	0.49	+0.1
2,045,046	+		GFF2020	0.54	-0.4
2,045,046	+		GFF2020	0.54	+0.5
2,045,054	-		GFF2020	0.55	+0.4
2,045,054	-		GFF2020	0.55	+0.5
2,045,054	-		GFF2020	0.55	-0.6
2,045,054	-		GFF2020	0.55	-0.5
2,045,068	+		GFF2020	0.57	-1.5
2,045,068	+		GFF2020	0.57	+0.3
2,045,076	-		GFF2020	0.58	-1.4
2,045,076	-		GFF2020	0.58	+0.6
2,045,077	-		GFF2020	0.58	-1.9
2,045,097	-		GFF2020	0.61	-0.7
2,045,107	-		GFF2020	0.62	-0.1
2,045,110	-		GFF2020	0.63	+0.7
2,045,112	-		GFF2020	0.63	+0.6
2,045,120	-		GFF2020	0.64	+0.2
2,045,121	+		GFF2020	0.64	-0.2
2,045,129	-		GFF2020	0.65	+0.4
2,045,131	-		GFF2020	0.66	-0.1
2,045,147	-		GFF2020	0.68	-0.5
2,045,156	+		GFF2020	0.69	+0.0
2,045,156	+		GFF2020	0.69	-2.0
2,045,164	-		GFF2020	0.70	+0.3
2,045,175	+		GFF2020	0.72	+0.1
2,045,175	+		GFF2020	0.72	+1.0
2,045,181	+		GFF2020	0.72	-0.3
2,045,182	+		GFF2020	0.73	-1.7
2,045,183	-		GFF2020	0.73	+0.1
2,045,187	+		GFF2020	0.73	+0.2
2,045,191	+		GFF2020	0.74	+0.7
2,045,199	-		GFF2020	0.75	-0.6
2,045,199	-		GFF2020	0.75	-1.0
2,045,199	-		GFF2020	0.75	+1.0
2,045,199	-		GFF2020	0.75	-0.8
2,045,214	-		GFF2020	0.77	+1.7
2,045,214	-		GFF2020	0.77	+0.5
2,045,214	-		GFF2020	0.77	+0.3
2,045,227	-		GFF2020	0.79	-0.3
2,045,253	-		GFF2020	0.82	+0.1
2,045,280	+		GFF2020	0.86	-2.0
2,045,303	+		GFF2020	0.89	-0.1
2,045,308	+				-0.5
2,045,336	-				+1.1
2,045,345	+				-1.2
2,045,345	+				-0.2
2,045,345	+				-0.5
2,045,345	+				+1.5
2,045,353	-				+1.2
2,045,353	-				+1.3
2,045,353	-				+0.0
2,045,362	+				+1.3
2,045,363	-				-0.2
2,045,376	+				-1.4
2,045,389	-				+0.0
2,045,425	-				-1.3
2,045,431	-				+0.5
2,045,449	-				-0.6
2,045,533	-		GFF2021	0.17	+1.2
2,045,540	+		GFF2021	0.18	-2.6
2,045,545	+		GFF2021	0.19	-0.0
2,045,546	+		GFF2021	0.19	-0.1
2,045,546	+		GFF2021	0.19	+0.5
2,045,554	-		GFF2021	0.20	+0.1
2,045,554	-		GFF2021	0.20	-1.2
2,045,560	-		GFF2021	0.21	-1.2
2,045,569	-		GFF2021	0.22	+1.0
2,045,569	-		GFF2021	0.22	-0.8
2,045,575	+		GFF2021	0.22	+0.6
2,045,587	-		GFF2021	0.24	+0.3
2,045,597	+		GFF2021	0.25	-0.9
2,045,614	-		GFF2021	0.27	+0.6
2,045,616	+		GFF2021	0.27	-0.8
2,045,616	+		GFF2021	0.27	-0.4
2,045,621	+		GFF2021	0.28	+1.3
2,045,623	+		GFF2021	0.28	-2.3
2,045,624	-		GFF2021	0.28	-1.1
2,045,631	-		GFF2021	0.29	-0.8
2,045,633	+		GFF2021	0.29	-1.4
2,045,641	-		GFF2021	0.30	-1.4
2,045,664	+		GFF2021	0.33	-1.5
2,045,665	+		GFF2021	0.33	-0.5
2,045,665	+		GFF2021	0.33	-1.2
2,045,669	+		GFF2021	0.33	+0.5
2,045,672	-		GFF2021	0.34	-0.0
2,045,672	-		GFF2021	0.34	+0.6
2,045,673	-		GFF2021	0.34	-0.1
2,045,673	-		GFF2021	0.34	-2.2
2,045,673	-		GFF2021	0.34	-0.5
2,045,682	-		GFF2021	0.35	-0.0
2,045,687	-		GFF2021	0.35	+0.7
2,045,700	+		GFF2021	0.37	-0.5
2,045,700	+		GFF2021	0.37	+0.2
2,045,706	+		GFF2021	0.38	+1.3
2,045,713	+		GFF2021	0.38	+1.5
2,045,713	+		GFF2021	0.38	+0.2
2,045,714	+		GFF2021	0.38	-1.6
2,045,721	-		GFF2021	0.39	+0.4
2,045,721	-		GFF2021	0.39	-0.7
2,045,722	-		GFF2021	0.39	+0.6
2,045,722	-		GFF2021	0.39	-0.4
2,045,733	+		GFF2021	0.41	+0.4
2,045,745	-		GFF2021	0.42	-0.6
2,045,751	-		GFF2021	0.43	+0.2
2,045,751	-		GFF2021	0.43	-0.6
2,045,753	+		GFF2021	0.43	+0.9
2,045,753	+		GFF2021	0.43	+0.3
2,045,760	-		GFF2021	0.44	-0.4
2,045,782	+		GFF2021	0.46	-1.8
2,045,782	+		GFF2021	0.46	+0.2
2,045,784	-		GFF2021	0.47	-0.5
2,045,785	-		GFF2021	0.47	+0.4
2,045,796	+		GFF2021	0.48	+0.3
2,045,804	-		GFF2021	0.49	-0.8
2,045,804	-		GFF2021	0.49	-2.7
2,045,820	+		GFF2021	0.51	+1.0
2,045,820	+		GFF2021	0.51	+1.7
2,045,823	-		GFF2021	0.51	-1.2
2,045,825	+		GFF2021	0.51	+0.8
2,045,828	-		GFF2021	0.52	+1.0
2,045,828	-		GFF2021	0.52	+0.1
2,045,828	-		GFF2021	0.52	+0.7
2,045,833	-		GFF2021	0.52	-0.5
2,045,833	-		GFF2021	0.52	+1.2
2,045,840	-		GFF2021	0.53	+0.3
2,045,842	-		GFF2021	0.53	+0.9
2,045,848	-		GFF2021	0.54	-0.0
2,045,860	-		GFF2021	0.55	-0.0
2,045,862	+		GFF2021	0.56	-1.5
2,045,862	+		GFF2021	0.56	-0.8
2,045,862	+		GFF2021	0.56	-0.6
2,045,865	-		GFF2021	0.56	-0.7
2,045,865	-		GFF2021	0.56	-0.2
2,045,867	+		GFF2021	0.56	+0.6
2,045,867	+		GFF2021	0.56	-1.7
2,045,867	+		GFF2021	0.56	+0.5
2,045,867	+		GFF2021	0.56	-0.2
2,045,867	+		GFF2021	0.56	-0.3
2,045,867	+		GFF2021	0.56	-0.2
2,045,867	+		GFF2021	0.56	-0.6
2,045,867	+		GFF2021	0.56	-0.1
2,045,867	+		GFF2021	0.56	+0.1
2,045,867	+		GFF2021	0.56	-0.7
2,045,867	+		GFF2021	0.56	+0.4
2,045,867	+		GFF2021	0.56	-1.0
2,045,867	+		GFF2021	0.56	+0.6
2,045,867	+		GFF2021	0.56	-1.2
2,045,867	+		GFF2021	0.56	+1.1
2,045,867	+		GFF2021	0.56	-0.8
2,045,867	+		GFF2021	0.56	-0.8
2,045,867	+		GFF2021	0.56	+0.4
2,045,867	+		GFF2021	0.56	+0.1
2,045,870	-		GFF2021	0.57	+1.1
2,045,870	-		GFF2021	0.57	-1.8
2,045,875	-		GFF2021	0.57	-0.1
2,045,875	-		GFF2021	0.57	-0.3
2,045,875	-		GFF2021	0.57	-1.8
2,045,875	-		GFF2021	0.57	+0.6
2,045,875	-		GFF2021	0.57	+1.1
2,045,875	-		GFF2021	0.57	+0.5
2,045,875	-		GFF2021	0.57	-1.9
2,045,875	-		GFF2021	0.57	-1.2
2,045,875	-		GFF2021	0.57	-1.2
2,045,875	-		GFF2021	0.57	-0.6
2,045,875	-		GFF2021	0.57	+1.1
2,045,875	-		GFF2021	0.57	-1.8
2,045,875	-		GFF2021	0.57	+0.6
2,045,875	-		GFF2021	0.57	-0.3
2,045,875	-		GFF2021	0.57	+0.2
2,045,875	-		GFF2021	0.57	-1.1
2,045,875	-		GFF2021	0.57	-1.7
2,045,875	-		GFF2021	0.57	-0.1
2,045,881	+		GFF2021	0.58	+0.0
2,045,884	-		GFF2021	0.58	+0.2
2,045,889	-		GFF2021	0.59	-1.4
2,045,889	-		GFF2021	0.59	+0.6
2,045,891	+		GFF2021	0.59	+0.3
2,045,906	+		GFF2021	0.61	+1.2
2,045,914	-		GFF2021	0.62	+1.0
2,045,914	-		GFF2021	0.62	+0.1
2,045,914	-		GFF2021	0.62	-1.1
2,045,914	-		GFF2021	0.62	+0.9
2,045,916	+		GFF2021	0.62	-0.7
2,045,916	+		GFF2021	0.62	-0.7
2,045,936	-		GFF2021	0.64	-0.6
2,045,958	+		GFF2021	0.67	+0.3
2,045,958	+		GFF2021	0.67	+0.0
2,045,963	+		GFF2021	0.67	-0.9
2,045,964	+		GFF2021	0.67	-0.7
2,045,971	-		GFF2021	0.68	-0.2
2,045,973	+		GFF2021	0.69	-0.8
2,045,995	-		GFF2021	0.71	-0.7
2,046,002	+		GFF2021	0.72	-0.9
2,046,002	+		GFF2021	0.72	-2.5
2,046,009	-		GFF2021	0.73	-1.0
2,046,010	-		GFF2021	0.73	-0.3
2,046,021	+		GFF2021	0.74	-2.1
2,046,026	+		GFF2021	0.75	+0.4
2,046,034	-		GFF2021	0.76	-1.6
2,046,043	+		GFF2021	0.77	-2.1
2,046,051	-		GFF2021	0.78	-0.4
2,046,052	+		GFF2021	0.78	-2.5
2,046,058	-		GFF2021	0.78	+0.2
2,046,058	-		GFF2021	0.78	+0.3
2,046,063	+		GFF2021	0.79	+0.0
2,046,063	+		GFF2021	0.79	+0.3
2,046,063	+		GFF2021	0.79	+0.8
2,046,063	+		GFF2021	0.79	-0.4
2,046,063	+		GFF2021	0.79	+0.3
2,046,063	+		GFF2021	0.79	+0.6
2,046,071	-		GFF2021	0.80	-0.9
2,046,071	-		GFF2021	0.80	-0.5
2,046,086	+		GFF2021	0.82	+0.3
2,046,112	+		GFF2021	0.85	-0.7
2,046,121	-		GFF2021	0.86	-0.6
2,046,127	-		GFF2021	0.86	-0.6
2,046,135	-		GFF2021	0.87	-0.9
2,046,148	+		GFF2021	0.89	-0.2
2,046,199	-				-1.2
2,046,207	+				+0.5
2,046,211	+				-0.3
2,046,211	+				-0.7
2,046,214	-				+0.3
2,046,214	-				+0.6
2,046,219	-				-1.0
2,046,219	-				-0.6
2,046,219	-				-0.8
2,046,219	-				-1.7
2,046,219	-				+0.5
2,046,220	-				-0.9
2,046,243	+				+0.6
2,046,243	+				-0.5
2,046,243	+				+0.1
2,046,255	+				-0.0
2,046,255	+				+1.0
2,046,255	+				-1.7
2,046,263	-				+0.8
2,046,264	+				-0.7
2,046,274	+				+0.4
2,046,292	-				+0.8
2,046,329	+				-0.2
2,046,360	+				+0.0
2,046,362	+				+0.5
2,046,365	-				+0.1
2,046,370	-				-0.2
2,046,370	-				-1.0
2,046,385	+				-0.8
2,046,386	+				-0.1
2,046,390	+				-0.5
2,046,406	+				+1.3
2,046,408	-				+0.2
2,046,414	-				-0.3
2,046,414	-				-0.5
2,046,414	-				+0.5
2,046,424	-				-0.3
2,046,441	+				+1.1
2,046,441	+				-0.6
2,046,456	+				+1.6
2,046,458	-				+0.3
2,046,464	-				-0.3
2,046,464	-				-1.6
2,046,500	+				+0.7
2,046,500	+				+0.0
2,046,500	+				-0.6
2,046,500	+				-0.5
2,046,500	+				-1.2
2,046,508	-				-1.1
2,046,518	-				+0.3
2,046,539	+		GFF2022	0.15	-1.6
2,046,539	+		GFF2022	0.15	+0.3
2,046,539	+		GFF2022	0.15	+0.0
2,046,539	+		GFF2022	0.15	+0.2
2,046,544	+		GFF2022	0.18	-1.7
2,046,544	+		GFF2022	0.18	+0.6
2,046,547	-		GFF2022	0.19	+0.9
2,046,547	-		GFF2022	0.19	-0.7
2,046,547	-		GFF2022	0.19	-0.7
2,046,547	-		GFF2022	0.19	+1.2
2,046,547	-		GFF2022	0.19	+0.5
2,046,547	-		GFF2022	0.19	-1.2
2,046,547	-		GFF2022	0.19	+0.3
2,046,549	+		GFF2022	0.20	-2.4
2,046,549	+		GFF2022	0.20	+0.2
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