Strain Fitness in Sphingobium sp. HT1-2 around GFF2001

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
2,020,877	-		GFF2000	0.66	-1.5
2,021,405	-				+0.3
2,021,409	-				-0.9
2,021,464	+				+0.3
2,021,472	-				-0.8
2,021,473	-				-0.4
2,021,504	+				-0.9
2,021,504	+				-0.8
2,021,512	-				-0.2
2,021,546	+				+0.1
2,021,551	+				-0.4
2,021,551	+				-1.8
2,021,551	+				-2.0
2,021,551	+				+0.8
2,021,551	+				+0.4
2,021,556	+				-0.7
2,021,556	+				-0.1
2,021,556	+				-0.6
2,021,556	+				-0.3
2,021,556	+				+0.1
2,021,556	+				-1.8
2,021,559	-				-1.3
2,021,559	-				-1.7
2,021,564	-				+0.2
2,021,564	-				+0.7
2,021,564	-				+0.7
2,021,564	-				+0.4
2,021,564	-				+0.6
2,021,564	-				-0.1
2,021,566	+				+0.2
2,021,574	-				-0.6
2,021,595	+				-0.4
2,021,617	+				-0.2
2,021,617	+				-0.1
2,021,625	-				-1.2
2,021,667	-				+0.9
2,021,667	-				-1.4
2,021,687	-				-0.5
2,021,692	-				-0.3
2,021,693	-				+0.4
2,021,697	-		GFF2001	0.10	+1.2
2,021,766	+		GFF2001	0.14	+0.7
2,021,766	+		GFF2001	0.14	-0.1
2,021,766	+		GFF2001	0.14	+0.1
2,021,766	-		GFF2001	0.14	+0.5
2,021,774	-		GFF2001	0.15	+0.1
2,021,778	+		GFF2001	0.15	-2.4
2,021,778	+		GFF2001	0.15	+0.0
2,021,778	+		GFF2001	0.15	-0.8
2,021,778	+		GFF2001	0.15	-0.4
2,021,783	+		GFF2001	0.15	-2.1
2,021,784	-		GFF2001	0.15	+0.6
2,021,786	-		GFF2001	0.15	+0.2
2,021,786	-		GFF2001	0.15	-2.3
2,021,788	+		GFF2001	0.16	-0.4
2,021,788	+		GFF2001	0.16	-1.2
2,021,788	+		GFF2001	0.16	-2.5
2,021,788	+		GFF2001	0.16	-1.7
2,021,788	+		GFF2001	0.16	-2.2
2,021,791	-		GFF2001	0.16	-2.0
2,021,791	-		GFF2001	0.16	-0.0
2,021,796	-		GFF2001	0.16	-0.9
2,021,796	-		GFF2001	0.16	-1.0
2,021,796	-		GFF2001	0.16	-0.2
2,021,796	-		GFF2001	0.16	-1.1
2,021,801	-		GFF2001	0.16	+0.1
2,021,810	-		GFF2001	0.17	+0.5
2,021,824	+		GFF2001	0.18	-0.1
2,021,832	-		GFF2001	0.18	-1.9
2,021,839	-		GFF2001	0.19	-0.7
2,021,864	-		GFF2001	0.20	+0.9
2,021,872	-		GFF2001	0.21	+0.3
2,021,888	+		GFF2001	0.22	+0.2
2,021,912	+		GFF2001	0.23	+0.6
2,021,914	+		GFF2001	0.23	-0.0
2,021,942	+		GFF2001	0.25	+0.2
2,021,949	+		GFF2001	0.25	-0.3
2,021,950	-		GFF2001	0.25	-0.1
2,021,950	-		GFF2001	0.25	+0.1
2,021,950	-		GFF2001	0.25	+1.2
2,021,959	+		GFF2001	0.26	-1.5
2,021,967	+		GFF2001	0.26	-0.3
2,021,967	+		GFF2001	0.26	-1.5
2,021,967	+		GFF2001	0.26	+1.2
2,021,967	+		GFF2001	0.26	-0.9
2,021,967	+		GFF2001	0.26	+1.4
2,021,967	+		GFF2001	0.26	-1.2
2,021,967	+		GFF2001	0.26	-2.6
2,021,975	-		GFF2001	0.27	+0.0
2,021,975	-		GFF2001	0.27	-0.6
2,021,975	-		GFF2001	0.27	+0.8
2,021,975	-		GFF2001	0.27	+0.1
2,021,975	-		GFF2001	0.27	-1.0
2,021,975	-		GFF2001	0.27	-0.4
2,021,975	-		GFF2001	0.27	-1.8
2,021,975	-		GFF2001	0.27	+0.3
2,021,975	-		GFF2001	0.27	+0.1
2,021,975	-		GFF2001	0.27	+0.6
2,021,980	-		GFF2001	0.27	+1.3
2,021,982	+		GFF2001	0.27	-1.0
2,021,995	+		GFF2001	0.28	-0.4
2,022,010	-		GFF2001	0.29	-1.5
2,022,089	-		GFF2001	0.34	+0.7
2,022,091	+		GFF2001	0.34	-1.2
2,022,099	-		GFF2001	0.34	+0.4
2,022,099	-		GFF2001	0.34	-1.4
2,022,105	-		GFF2001	0.35	+1.2
2,022,126	+		GFF2001	0.36	-0.2
2,022,131	+		GFF2001	0.36	+0.1
2,022,131	+		GFF2001	0.36	-0.8
2,022,131	+		GFF2001	0.36	-1.6
2,022,134	-		GFF2001	0.37	-3.1
2,022,139	-		GFF2001	0.37	-1.4
2,022,139	-		GFF2001	0.37	+0.0
2,022,141	+		GFF2001	0.37	-0.1
2,022,166	-		GFF2001	0.39	+0.3
2,022,188	+		GFF2001	0.40	+0.3
2,022,214	+		GFF2001	0.41	-0.9
2,022,220	+		GFF2001	0.42	-0.2
2,022,254	-		GFF2001	0.44	-1.1
2,022,293	-		GFF2001	0.46	-0.2
2,022,297	-		GFF2001	0.47	-1.9
2,022,304	+		GFF2001	0.47	-0.2
2,022,311	+		GFF2001	0.47	+0.1
2,022,319	-		GFF2001	0.48	-2.3
2,022,345	-		GFF2001	0.49	-2.0
2,022,369	+		GFF2001	0.51	+0.3
2,022,377	-		GFF2001	0.51	-0.0
2,022,377	-		GFF2001	0.51	+0.8
2,022,400	+		GFF2001	0.53	-1.9
2,022,400	+		GFF2001	0.53	-0.6
2,022,400	+		GFF2001	0.53	+0.2
2,022,400	+		GFF2001	0.53	-0.4
2,022,400	+		GFF2001	0.53	-0.4
2,022,400	+		GFF2001	0.53	+0.1
2,022,400	+		GFF2001	0.53	-0.4
2,022,400	+		GFF2001	0.53	+1.2
2,022,400	+		GFF2001	0.53	+0.6
2,022,400	+		GFF2001	0.53	+0.8
2,022,400	+		GFF2001	0.53	+0.4
2,022,400	+		GFF2001	0.53	-0.1
2,022,400	+		GFF2001	0.53	+0.6
2,022,408	-		GFF2001	0.53	-0.5
2,022,408	-		GFF2001	0.53	-1.3
2,022,408	-		GFF2001	0.53	+1.1
2,022,408	-		GFF2001	0.53	+0.5
2,022,408	-		GFF2001	0.53	+1.1
2,022,408	-		GFF2001	0.53	-0.7
2,022,408	-		GFF2001	0.53	-2.0
2,022,408	-		GFF2001	0.53	-1.2
2,022,408	-		GFF2001	0.53	-0.5
2,022,425	+		GFF2001	0.54	-0.7
2,022,426	+		GFF2001	0.54	-2.2
2,022,426	+		GFF2001	0.54	-1.2
2,022,426	+		GFF2001	0.54	-0.9
2,022,426	+		GFF2001	0.54	+0.4
2,022,426	+		GFF2001	0.54	-0.8
2,022,434	-		GFF2001	0.55	+0.7
2,022,434	-		GFF2001	0.55	+1.2
2,022,434	-		GFF2001	0.55	-0.6
2,022,434	-		GFF2001	0.55	-1.3
2,022,434	-		GFF2001	0.55	+0.4
2,022,434	-		GFF2001	0.55	+0.8
2,022,434	-		GFF2001	0.55	-0.5
2,022,434	-		GFF2001	0.55	-0.8
2,022,436	+		GFF2001	0.55	+1.3
2,022,449	-		GFF2001	0.56	-1.5
2,022,462	+		GFF2001	0.57	+0.3
2,022,467	+		GFF2001	0.57	-1.0
2,022,467	+		GFF2001	0.57	+1.3
2,022,470	-		GFF2001	0.57	+0.1
2,022,475	+		GFF2001	0.57	-1.4
2,022,475	+		GFF2001	0.57	-0.6
2,022,475	+		GFF2001	0.57	+0.9
2,022,475	-		GFF2001	0.57	+0.0
2,022,483	-		GFF2001	0.58	-0.2
2,022,483	-		GFF2001	0.58	-0.9
2,022,483	-		GFF2001	0.58	-1.2
2,022,483	-		GFF2001	0.58	-1.1
2,022,483	-		GFF2001	0.58	+1.1
2,022,483	-		GFF2001	0.58	+0.7
2,022,483	-		GFF2001	0.58	+0.2
2,022,483	-		GFF2001	0.58	-1.4
2,022,483	-		GFF2001	0.58	-2.2
2,022,483	-		GFF2001	0.58	-0.1
2,022,492	-		GFF2001	0.58	-1.1
2,022,528	-		GFF2001	0.61	-0.3
2,022,532	-		GFF2001	0.61	+1.0
2,022,534	+		GFF2001	0.61	+2.0
2,022,534	+		GFF2001	0.61	-1.2
2,022,534	+		GFF2001	0.61	-1.2
2,022,534	+		GFF2001	0.61	-0.4
2,022,534	+		GFF2001	0.61	-0.5
2,022,534	+		GFF2001	0.61	+0.1
2,022,534	+		GFF2001	0.61	+0.3
2,022,534	+		GFF2001	0.61	+0.2
2,022,534	+		GFF2001	0.61	-1.0
2,022,534	+		GFF2001	0.61	-0.1
2,022,534	+		GFF2001	0.61	-0.6
2,022,534	+		GFF2001	0.61	+0.4
2,022,534	+		GFF2001	0.61	-1.4
2,022,534	+		GFF2001	0.61	-0.7
2,022,534	+		GFF2001	0.61	-0.2
2,022,534	+		GFF2001	0.61	-0.9
2,022,534	+		GFF2001	0.61	-1.8
2,022,534	+		GFF2001	0.61	-1.7
2,022,534	+		GFF2001	0.61	-0.6
2,022,534	+		GFF2001	0.61	+1.1
2,022,537	-		GFF2001	0.61	+0.8
2,022,539	+		GFF2001	0.61	-0.3
2,022,542	-		GFF2001	0.61	+1.5
2,022,542	-		GFF2001	0.61	-1.4
2,022,542	-		GFF2001	0.61	+0.0
2,022,542	-		GFF2001	0.61	-0.9
2,022,542	-		GFF2001	0.61	-0.6
2,022,542	-		GFF2001	0.61	-1.2
2,022,542	-		GFF2001	0.61	-1.7
2,022,542	-		GFF2001	0.61	-0.2
2,022,542	-		GFF2001	0.61	-0.4
2,022,542	-		GFF2001	0.61	-0.1
2,022,542	-		GFF2001	0.61	-0.3
2,022,542	-		GFF2001	0.61	+1.0
2,022,542	-		GFF2001	0.61	+0.3
2,022,542	-		GFF2001	0.61	-1.4
2,022,542	-		GFF2001	0.61	-0.0
2,022,542	-		GFF2001	0.61	-1.6
2,022,542	-		GFF2001	0.61	-0.3
2,022,542	-		GFF2001	0.61	-0.1
2,022,555	-		GFF2001	0.62	-1.6
2,022,557	+		GFF2001	0.62	-1.6
2,022,566	-		GFF2001	0.63	-1.2
2,022,627	+		GFF2001	0.67	-2.7
2,022,635	-		GFF2001	0.67	-0.1
2,022,644	+		GFF2001	0.68	-1.5
2,022,654	+		GFF2001	0.68	+0.7
2,022,660	+		GFF2001	0.69	-0.4
2,022,660	+		GFF2001	0.69	+0.0
2,022,660	+		GFF2001	0.69	-0.0
2,022,660	+		GFF2001	0.69	-0.9
2,022,662	-		GFF2001	0.69	-1.2
2,022,662	-		GFF2001	0.69	+0.7
2,022,662	-		GFF2001	0.69	-0.6
2,022,668	-		GFF2001	0.69	-1.5
2,022,674	+		GFF2001	0.69	+0.5
2,022,697	-		GFF2001	0.71	-1.5
2,022,697	-		GFF2001	0.71	-0.2
2,022,704	-		GFF2001	0.71	-2.2
2,022,742	-		GFF2001	0.74	-1.7
2,022,771	+		GFF2001	0.75	-0.1
2,022,771	+		GFF2001	0.75	-0.7
2,022,779	-		GFF2001	0.76	-1.1
2,022,804	+		GFF2001	0.77	-1.6
2,022,811	-		GFF2001	0.78	+0.1
2,022,812	-		GFF2001	0.78	-0.5
2,022,816	+		GFF2001	0.78	+1.4
2,022,816	+		GFF2001	0.78	-1.4
2,022,816	+		GFF2001	0.78	-1.4
2,022,816	+		GFF2001	0.78	+0.3
2,022,816	+		GFF2001	0.78	-0.2
2,022,816	+		GFF2001	0.78	+0.0
2,022,824	-		GFF2001	0.79	-2.2
2,022,847	-		GFF2001	0.80	-0.3
2,022,864	-		GFF2001	0.81	+0.7
2,022,889	-		GFF2001	0.82	+0.2
2,022,889	-		GFF2001	0.82	+0.5
2,022,897	+		GFF2001	0.83	-0.1
2,022,954	+		GFF2001	0.86	-0.7
2,022,954	+		GFF2001	0.86	+0.2
2,022,997	+		GFF2001	0.89	-1.2
2,023,012	-		GFF2001	0.90	+0.7
2,023,020	+				-0.3
2,023,056	-				-1.7
2,023,059	+				-0.6
2,023,072	-				-1.2
2,023,083	-				+0.6
2,023,088	-				-0.4
2,023,098	+				-0.7
2,023,103	+				-0.7
2,023,106	-				+0.9
2,023,131	+				-0.5
2,023,131	+				+0.9
2,023,139	-				+0.2
2,023,139	-				-1.5
2,023,139	-				+0.1
2,023,172	+				+0.5
2,023,198	-				+0.8
2,023,199	-				-0.1
2,023,201	+				-0.5
2,023,201	+				-0.1
2,023,207	-				+0.9
2,023,235	+				-2.3
2,023,235	+				-1.0
2,023,285	+				+0.2
2,023,292	+				-1.0
2,023,312	-				+0.0
2,023,333	-				+0.2
2,023,351	-				-0.3
2,023,371	-				-0.9
2,023,386	-				-2.1
2,023,410	-				+0.4
2,023,434	-				-0.3